mRNA_P-littoralis_Contig789.25.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 503 bits (1294), Expect = 6.740e-163 Identity = 254/338 (75.15%), Postives = 288/338 (85.21%), Query Frame = 1
Query: 16 VDVMGDLPAAELEEFQFLKVAGLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVIPLPELTGSAASLAKMQGVQVPHVPVSS 1023
+DV D +AE+EE FLKVAGLVVKLD FHAMQR+SKLILKSHGAC AYLARLRDAFF +NAEDLAAVEAAL QAGMS++EV+ KK KDW YFLKRCRR++P PAEL++RFDLVN +YGGL+ KKTK+PLFRAEALEA+KRLRVHI+ DCCSD+P++AL+FEAGKD+E L L C R LEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFY QPMLEAI+R+TSKLYG AKY WLPTSAY DTGER GFVRSIF SN GGG + EILGG +N G++P E +PLPELTGSAA LAKMQGVQVPH+PV+S
Sbjct: 680 LDVTADTSSAEVEELLFLKVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTS 1017
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE) HSP 1 Score: 461 bits (1187), Expect = 5.850e-154 Identity = 239/341 (70.09%), Postives = 278/341 (81.52%), Query Frame = 1
Query: 13 IVDVMGDLPAAELEEFQFLKVAGLVVKLDAFH--AMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVIPLPELTGSAASLAKMQGVQVPHVPVSS 1023
++DV D+ +AE+EE FLK+ L + A A +SKLILKSHGAC AYLARLRD FF +NAEDLAAVEAAL QAGMS++EV+ KK KDW FLKRCRR++P PAEL+KRFD+VN +YGGL+ KKTK+PLFRAEALEA+KRLRVHI+ DCCSDAP++AL+FEAGKD+E L L C R LEG+HLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFY QP+LEAI+R+TSKLYG AKY WLPTSAY DTGER GFVRSIF S GGGG + EILGG +N ++P S E +PLPELTGSAA LAKMQGVQVPH+PV+S
Sbjct: 279 LLDVTADMSSAEVEELLFLKLKALDQRNYALLRLAAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSEVGGGGTDSVLEILGGAENSSMDPASVEEAVPLPELTGSAARLAKMQGVQVPHMPVTS 619
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE) HSP 1 Score: 351 bits (901), Expect = 1.400e-112 Identity = 176/239 (73.64%), Postives = 202/239 (84.52%), Query Frame = 1
Query: 313 RMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVIPLPELTGSAASLAKMQGVQVPHVPVSS 1023
R++P PAEL++RFDLVN +YGGL+ KKTK+PLFRAEALEA+KRLRVHI+ DCCSD+P++AL+FEAGKD+E L L C R LEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFY QPMLEAI+R+TSKLYG AKY WLPTSAY DTGER GFVRSIF SN GGG + EILGG +N G++P E +PLPELTGSAA LAKMQGVQVPH+PV+S
Sbjct: 206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTS 444
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.220e-57 Identity = 127/320 (39.69%), Postives = 187/320 (58.44%), Query Frame = 1
Query: 76 AGLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDL---AAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*-ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAK-YPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVIPLPELTGSAASLAKMQGVQVPHVPV 1017
+ L V+LD FHA+QR+SKL KSHGA ++ARLRDA F +N +D+ +AVE AL GM+ + V K K+W +F++ CRR++P L++RF+LV + + +V K+ + L R A +AV+ LR HI C SD L++ +GK+S C R EGYH ++R LL +C SP LAH +LLE NYRWN+R ++ NRGL VG F+ Q +E I+R T+ Y ++ +P+W+ ADTGE+ G S++ GG + +++ D GL +P+P+LT SA A+M +P PV
Sbjct: 174 SALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSAGITTRRCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLV---DEQGLAQ----NAVPMPKLTHSAKKYAQMMHAGMPVTPV 486
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG) HSP 1 Score: 212 bits (540), Expect = 1.830e-57 Identity = 114/236 (48.31%), Postives = 152/236 (64.41%), Query Frame = 1
Query: 82 LVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*-ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDW 783
L V+LD FHAM R++K +LKSHGA ++ARLRDAFF I+ +DL V AAL AG+S DE++ KK DWA+FLK C R++P EL+KR+D V + ++ KT +PLFR+ + V+ LR HI C SD PD L+F G+ S+ + C+R + EGYH HMR LL + SP L HLLLLE N+RWN+R ++ NRGL GGFY Q +L+ I R +S L + Y W
Sbjct: 433 LKVRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQGLPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSGLSVHVPYLAW 668
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE) HSP 1 Score: 200 bits (509), Expect = 5.370e-53 Identity = 124/327 (37.92%), Postives = 187/327 (57.19%), Query Frame = 1
Query: 76 AGLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDL---AAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAK-YPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVIPLPELTGSAASLAKMQGVQVPHVPVSSQLKLRS 1041
+ L V+LD FHA+QR+SKL KSHGA ++ARLRDA F +N +D+ +AVE AL GM+ + V K K+W +F++ CRR++P L++RF+LV + + +V K+ + L R A +AV+ LR HI C SD L++ K + + EGYH ++R LL +C SP LAH +LLE NYRWN+R ++ NRGL VG F+ Q +E I+R T+ Y ++ +P+W+ ADTGE+ G S++ GG + +++ D GL +P+P+LT SA A+M +P PV + + R+
Sbjct: 174 SALKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYT--KSAGITTRRCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLV---DEQGLAQ----NAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRN 491
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 196 bits (497), Expect = 1.890e-50 Identity = 125/330 (37.88%), Postives = 179/330 (54.24%), Query Frame = 1
Query: 88 VKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDL-------------AAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKL-YGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVI----PLPELTGSAASLAKMQGVQVPHVPV 1017
V+LD FH + R+S++ KSHGA ++ARLRDA F +N +D+ +VE L GM +EV ++W++FL+ RR++P L+KRFD V + +GG V + + L R +A++AV++LR HI DC SD A++F GK+ L D +EGYH ++R LL ++C SP LA +LLE NYRWNLR I NRGL A+GG Y Q ++E+I+R T+ + +P+W DTGER G RS++ G E+ G DN G + P+ +LT SA AKM G +P V
Sbjct: 488 VRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDG-------EVWGIADNDAFCTDDGDSDVNGRTPMSDLTLSAKMYAKMMGESMPETRV 810
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.970e-47 Identity = 99/222 (44.59%), Postives = 143/222 (64.41%), Query Frame = 1
Query: 88 VKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*A-LEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVT 747
V+LD FHA+ RLS+ I K HGA +ARLRDA F +N +D+ +E L + GMS +V K +DW+YFL++CRR++PPP+EL+KRFD V + +G V +K+ L R ++++AV LR HIV C SD A+++ GK ++ C R +EGYH ++R LL ++C SP LA +LLE N+RWNL+ + NRGL +G Y Q ++E I+R T
Sbjct: 545 VRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI) HSP 1 Score: 166 bits (420), Expect = 8.200e-41 Identity = 97/255 (38.04%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 79 GLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*ALEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLY-GNAKYPDWLPTSAYADTGERCGFVRSI 840
L V+LD FHA+QR+S+L KSHGA ++ARLRDA F +N +D+ VE AL GM+ + V K K+W YFL+ CRR++P L++RF+ V + +V K+ + L R +A++AV +LR HI DC SD L++ G+++ C R Y E NYRWN+R ++ NRGL VG F+ Q +E I+R TS Y N +P+W+ ADTGE+ G +S+
Sbjct: 497 ALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNAAGITTRRCVRG---TNYT---------------------EFNYRWNIRMAVKNRGLPREVGEFFDQFEIEIIQRETSSWYPDNPLFPEWISALDAADTGEKSGLSQSL 727
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE) HSP 1 Score: 122 bits (307), Expect = 5.590e-27 Identity = 79/220 (35.91%), Postives = 118/220 (53.64%), Query Frame = 1
Query: 367 IYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*-ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLY-GNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGEVIPLPELTGSAASLAKMQGVQVPHVPV 1017
++G +V K+ + L R++A++ V L HI C SD L++ G+++ C R EGYH ++R LL ++C SP LAH +LLE N+RWN+R ++ NRGL VG F+ Q E I+R T+ Y N +P+W+ ADTGER G +S++ GG AP + + E S IP+P+LT SA A+ + +P PV
Sbjct: 1 MFGNVVDAKSGEKLLRSDAMKDVNLLLKHIETGCLSDPEGVPLYYPTGQNAAGITTHRCVRGTNCTEGYHRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERSGLSQSMWGP--ASGGDAPGDLVD--------EQASPQHAIPMPKLTHSAKKYAETMNIGMPCTPV 210 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig789.25.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig789.25.3 >prot_P-littoralis_Contig789.25.3 ID=prot_P-littoralis_Contig789.25.3|Name=mRNA_P-littoralis_Contig789.25.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp MGDLPAAELEEFQFLKVAGLVVKLDAFHAMQRLSKLILKSHGACGAYLARback to top mRNA from alignment at P-littoralis_Contig789:91609..93781- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig789.25.3 ID=mRNA_P-littoralis_Contig789.25.3|Name=mRNA_P-littoralis_Contig789.25.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2173bp|location=Sequence derived from alignment at P-littoralis_Contig789:91609..93781- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig789:91609..93781- >mRNA_P-littoralis_Contig789.25.3 ID=mRNA_P-littoralis_Contig789.25.3|Name=mRNA_P-littoralis_Contig789.25.3|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig789:91609..93781- (Pylaiella littoralis U1_48)back to top |