mRNA_P-littoralis_Contig783.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig783.11.1
Unique NamemRNA_P-littoralis_Contig783.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 3.140e-134
Identity = 197/267 (73.78%), Postives = 218/267 (81.65%), Query Frame = 1
Query:    1 LEYGKDAVRRWFVELGAAKVARRIKPSLSDAQKRRRIDFICDQVDETTGEYLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARPDPAHNFDGKIGIRRICVIKTAQRASER-------------------RKRG----EEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELV 732
            LE+GKD VRRWF +LGAAK A RIKPSLSDAQKR R+DFI D+VDE  GEYLDQGN+VH+DESWFYLMREKE VRVF GE+V G PRV H+SHLPKIMVIVANARPDPAH+FDGKIGI RICVI+TAQR+S++                   R R     EEYEFDCTIDAEWYKDWYIDVLLP I +KMPW RSKRVVVQQDGASPHTG+GNPEILNSAG+  GWLVELVTQPAQSPD N+NDLG FASLK RVW +NA +++ELV
Sbjct:   98 LEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A8J2WWN0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWN0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.710e-41
Identity = 100/279 (35.84%), Postives = 151/279 (54.12%), Query Frame = 1
Query:   13 KDAVRRWFVELGAAKVARRIKPSLSDAQKRRRIDFICDQVDETTGEYLDQGNMVHVDESWFYLMREKENVRVFP---GEEVLGAPR-VQHKSHLPKIMVIVANARPDPAHNFDGKIGIRRICVIKTAQRASERR---KRGEEYEFDCTIDAEWYKDWYI--DVLLPEINKKMPW*RS--------KRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSL 798
            ++++RRW   LGA K  + IKP L    K +R+ +  D++D   G   D  + VHVDE WF+ M +    RVFP   G   L  PR + HKS  PK+M +VA ARP P +NFDGKIGI    +++ A+R+ +     K   +     T+DA+ Y+      + ++  I +KM W +         + + +Q DGA PHT + N E+    G    +L+ +  QPAQSPD N++D+ FF SL+S    ++   + EL + + + YEEY  E LE  W+ L
Sbjct:  172 EESMRRWCKALGAKKHRQYIKPLLRLRHKVQRLKWALDEIDGN-GMLSDHKDTVHVDEKWFFQMDDGAVCRVFPDAHGNYTLPPPRRLYHKSRTPKLMFLVAVARPRPEYNFDGKIGIWHFAIVRKAKRSHKATGTVKGVTDIMETYTVDAKVYRKVITGKEGVMEAIREKMWWYKKGSGKPEAGQEIWLQHDGARPHTAKANEEVFEQKGQEEDFLITVCEQPAQSPDTNMDDIAFFNSLQSDTSCVSTSNLFELRDAVNKCYEEYPAERLEACWRVL 449          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.880e-37
Identity = 83/258 (32.17%), Postives = 144/258 (55.81%), Query Frame = 1
Query:   67 RIKPSLSDAQKRRRIDFICDQVDETTGE-----YLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARPD-PAHN---FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQ 813
            R+KP L+D  K  R+ F+  Q    TG      + D  + VH+DE WFY+ ++     ++  +E +   + + K H+ K+M + A ARP   A N   +DG+IG+      + A R+S+ RKRG++     T+  + Y+ + ID ++P +  K P  +  ++ +QQD A PH    +P ++ +AG   GW + L +QPAQSPD NV DLG+F +++S    M    +++LV  + + +EE +   L++ + +L KV++
Sbjct:    7 RLKPMLTDKHKSDRMAFV--QRHLRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLW-SDEAVPTRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVV-AAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQKVME 260          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.410e-36
Identity = 90/261 (34.48%), Postives = 146/261 (55.94%), Query Frame = 1
Query:   70 IKPSLSDAQKRRRI----DFICDQVDETTG------EYLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARPDPAHN----FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVL 810
            + PSL+DA K +R+     F+  ++ +TT       ++    + +H+DE WF+L ++K    +  GEE L +   +HKSH+PK+M + A  RP   H     FDGK+GI    +  TA+R+S  + +G       T+  + Y D  ++ +LP I  K P  R K + +QQDGA PH  +G PE++ SA    G  ++LVTQPA SPD N+ DLGFFA++++  +      ++E ++ + E + E   + L+ VW SL + +
Sbjct:  111 LSPSLTDACKYKRLLHCLSFL--RLSKTTRSCPAAFKFHAMLDWIHLDEKWFFLDKDKRTFYLVKGEE-LPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPS-RWKTLYIQQDGARPHCTDGCPELVASAAS-FGLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRM 366          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.650e-34
Identity = 84/263 (31.94%), Postives = 138/263 (52.47%), Query Frame = 1
Query:   67 RIKPSLSDAQKRRRIDFICDQVDETTGEYL---DQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARPDPAHN----FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQPNTP*GG 834
            R+KP ++D  K  R++F+   V  +T   +   D  + VH+DE WFYL        ++  E+V    +   K H+ K+M + A ARP   +     +DGKIG+     +  AQR S+ R+RG       T+  + Y+++ ++ ++P I K  P  RS  + +QQD A PH  E +   +  AG   GW ++LV QPA SPDFNV DLGFF S+++         +++LV  +   +++ D   L++ + +L +V+      GG
Sbjct:  132 RLKPMVTDKHKADRVEFVQAFVRPSTNGQMRWDDMLDRVHIDEKWFYLTLVNRRYYLWHDEDV-PVRKCSSKRHIIKVMFLTAVARPRYDYTQRRMWDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWPGRRSHPIYIQQDNARPHV-EVDDAAVTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRAFDDLDWSVLDKTFMTLQRVMGEALKMGG 392          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.740e-34
Identity = 83/256 (32.42%), Postives = 139/256 (54.30%), Query Frame = 1
Query:   67 RIKPSLSDAQKRRRIDFICDQV-DETTG--EYLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARP--DPAHN--FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQ 813
            R++P L+   +  R +F    + D   G  ++ D  + VH+DE WFY+ +      ++  +E     + Q K H+ K+M + A ARP  D AH   +DGK+G+      + A+R S+ R RG       T+    Y+ + +D ++P I  + P  R   + VQQD A PH    +PE+L +AG   GW ++L+ QPAQSPDFNV DLGFF +++S      A  +++L++ + + +E      L++ + +L KV++
Sbjct:  132 RLRPMLTPQHRVARYNFAKSFIRDGYQGRRQWHDMLDCVHIDEKWFYITQVNRRFYLW-HDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVME 385          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.720e-34
Identity = 88/254 (34.65%), Postives = 134/254 (52.76%), Query Frame = 1
Query:   73 KPSLSDAQKRRRIDFICDQVDETTGEYLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKS--HLPKIMVIVANARPDPAHN----FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSK-RVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQ 813
            KP L+   K +R+++I + +D+  G + D    +H+DE WFYL R K+   + PGE     P+   KS  H+ K+M + A ARP    N    FDGKIGI    V + A+R+S  R +G        +D E YK   ++ +LP I +K P   S   + +Q+D A PH      E+  +A    GW + + TQP  SPD NV DLGFF S++S  +   +  ++ L+  + E ++E   ETL  V+ SL   ++
Sbjct:  234 KPLLTAKNKLKRVEWILEHIDDN-GRFDDWFKWIHIDEKWFYLKRTKQTTYLLPGE---AEPKSTSKSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPHKATIREEV-KAAAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQSLQYKKRSKDIDHLIANVEEAFDECKRETLNNVFLSLQACME 482          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A0N7L738_PLAHL (Predicted methyltransferase n=4 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L738_PLAHL)

HSP 1 Score: 140 bits (354), Expect = 1.010e-33
Identity = 96/257 (37.35%), Postives = 140/257 (54.47%), Query Frame = 1
Query:   67 RIKPSLSDAQKRRRIDFICDQVDETTGEYLDQGNM---VHVDESWFYLMREKENVRVFPGE-EVLGAPRVQHKSHLPKIMVIVANARPD-PAHN---FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQ 813
            R KP L+D Q+  R+ F    V    G  +   +M   VH+DE WFYL  +K       GE E      V++K+++ K+M + A ARP   A N   +DGKIG+    V + A+R+S+ R  G       T+D + Y+     +++P I  K  W   KRVV+QQD A PH    +PE+ ++   G GW ++L  QPA SPDFN NDLGFFASL+S    M A  +E+LV  + + + +     L++V+ +L  VLQ
Sbjct:  450 RAKPMLTDKQRIDRVKFAASFVQRGPGVCIRFDSMMEYVHLDEKWFYL--KKXXXXXXXGEHEEEPYITVKNKNYMIKVMFLAAVARPRWSAKNHCIWDGKIGVWPFAVYEPAERSSKNRAAGTLELKTYTVDRDIYRQALCRMVIPRI--KAVWPSGKRVVLQQDNAKPHVTVDDPEVHSACSAG-GWDMKLTAQPANSPDFNANDLGFFASLQSLQHKMKAKTIEDLVNNVDDAFAKLHYTALDKVFLTLQSVLQ 701          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: W2R9B9_PHYPN (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R9B9_PHYPN)

HSP 1 Score: 139 bits (351), Expect = 1.870e-33
Identity = 92/278 (33.09%), Postives = 144/278 (51.80%), Query Frame = 1
Query:    1 LEYGKDAVRRWFVELGAAKVARRIKPSLSDAQKRRRIDFICDQVDE---TTGEYLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARP---DPAHN-FDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKRVVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQ 813
            L   K ++  +F+     +   R+KP LSD  +  R+ F    V      T  +    N VH+DE WFYL +E +   +   EE      V++K+++ K+M +VA ARP      H  +DGKIG+    V + A+R+S+ R  G        +D + Y+     +++P +  K  W   KRV +Q D A PH    +PE++ +   G GW + +   PA SPDFNVNDLGFF S++S      A  +E+LV  + E Y + +  T+++V+ +L  VLQ
Sbjct:   98 LGIAKSSLHDYFLAGAFRRHTTRLKPLLSDQHRADRLKFAYGFVHRGPRNTRVFDSFMNYVHLDEKWFYLKKENQGFYLGTHEEPPHLT-VKNKNYIVKVMFLVAVARPRWDSKRHRIWDGKIGLWPFVVYEPAERSSKNRPAGTLELKTYNVDKDVYRQALCRMVIPSV--KAVWPSGKRVFLQHDNAKPHVAADDPEVVAACSDG-GWDMSIKPPPANSPDFNVNDLGFFTSIQSLQHKKKARTIEDLVNNVEEAYSQLEYSTIDKVFVTLQSVLQ 371          
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Match: A0A6G0WUD8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.160e-33
Identity = 84/250 (33.60%), Postives = 142/250 (56.80%), Query Frame = 1
Query:   73 KPSLSDAQKRRRIDFICDQVDETTGEYLDQGNMVHVDESWFYLMREKENVRVFPGEEVLGAPR-VQHKSHLPKIMVIVANARPDPAHNFDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYIDVLLPEINKKMPW*RSKR--VVVQQDGASPHTGEGNPEILNSAGMGHGWLVELVTQPAQSPDFNVNDLGFFASLKSRVWAMNACAVEELVETIFEQYEEYDGETLERVWQSLFKVLQ 813
            +P+LSD Q+  R+ F  + VD     Y    ++VH+DE WF++ + +    ++  E ++  PR VQ+KSH+ K+M +VA ARP    ++DGK+G          QR S+ R+ GE      ++    Y+++  D++LP I  K  W  ++   + VQQD A  H+   + EIL +A    GW +E+  QPA+SPD NV DLGFF S+++    +    +EEL++ +   + + +  TLE+ +++L +V+Q
Sbjct:  132 RPALSDQQRACRLAFCKNFVDMNYASY----DVVHLDEKWFFMAKIRRKFLLWHDEAMV--PRHVQNKSHITKVMFLVAVARP--RGDWDGKVGCWPFVTKVQGQRTSKNRRAGELVLTPVSVTGAIYREYLCDLVLPAIKNKWVWPSNEHGTIFVQQDNAPAHSRLDDAEIL-AACNSDGWNIEMRFQPAKSPDLNVLDLGFFNSIQALQQRLECGTIEELIDAVKISFHDLERLTLEKTFRTLHRVVQ 372          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig783.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.140e-13473.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2WWN0_9STRA3.710e-4135.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6A4Z9D8_9STRA9.880e-3732.17Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0X8U9_9STRA2.410e-3634.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KDC6_9STRA1.650e-3431.94Aste57867_3131 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A5AA16_9STRA2.740e-3432.42Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A448ZNT1_9STRA3.720e-3434.65Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A0N7L738_PLAHL1.010e-3337.35Predicted methyltransferase n=4 Tax=Plasmopara hal... [more]
W2R9B9_PHYPN1.870e-3333.09DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6G0WUD8_9STRA2.160e-3333.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig783contigP-littoralis_Contig783:50129..51065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.A0A090MBK9
PFAMsHTH_Tnp_Tc3_2
Model size937
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.57e-15
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791610.054689-UTR-P-littoralis_Contig783:50128..505551680791610.054689-UTR-P-littoralis_Contig783:50128..50555Pylaiella littoralis U1_48UTRP-littoralis_Contig783 50129..50555 -
1680791610.0810463-UTR-P-littoralis_Contig783:50897..510651680791610.0810463-UTR-P-littoralis_Contig783:50897..51065Pylaiella littoralis U1_48UTRP-littoralis_Contig783 50898..51065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791610.0708237-CDS-P-littoralis_Contig783:50555..508971680791610.0708237-CDS-P-littoralis_Contig783:50555..50897Pylaiella littoralis U1_48CDSP-littoralis_Contig783 50556..50897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig783.11.1prot_P-littoralis_Contig783.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig783 50556..50897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig783.11.1

>prot_P-littoralis_Contig783.11.1 ID=prot_P-littoralis_Contig783.11.1|Name=mRNA_P-littoralis_Contig783.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MVHVDESWFYLMREKENVRVFPGEEVLGAPRVQHKSHLPKIMVIVANARP
DPAHNFDGKIGIRRICVIKTAQRASERRKRGEEYEFDCTIDAEWYKDWYI
DVLLPEINKKMPW*
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mRNA from alignment at P-littoralis_Contig783:50129..51065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig783.11.1 ID=mRNA_P-littoralis_Contig783.11.1|Name=mRNA_P-littoralis_Contig783.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=937bp|location=Sequence derived from alignment at P-littoralis_Contig783:50129..51065- (Pylaiella littoralis U1_48)
CTGGAGTACGGCAAGGACGCCGTGAGGCGGTGGTTCGTCGAGTTAGGGGC GGCAAAGGTGGCTCGACGCATCAAGCCGTCCCTTTCCGACGCCCAGAAGA GACGCCGAATCGACTTCATCTGCGACCAGGTGGACGAGACGACCGGGGAG TACCTCGACCAGGGAAACATGGTCCACGTGGACGAGAGTTGGTTTTATCT CATGAGGGAGAAAGAGAATGTTCGAGTGTTCCCAGGCGAGGAAGTTCTTG GGGCCCCCCGCGTTCAACACAAGAGCCACCTTCCCAAGATCATGGTCATT GTGGCAAACGCTCGCCCGGACCCTGCTCACAACTTCGACGGCAAGATCGG CATCAGGCGGATTTGTGTCATCAAAACCGCCCAGCGAGCGTCCGAGAGGA GGAAGAGGGGCGAAGAGTACGAATTCGACTGCACCATCGACGCGGAGTGG TACAAGGACTGGTACATCGACGTGCTTCTGCCTGAGATCAATAAGAAGAT GCCTTGGTAACGTTCAAAGCGCGTGGTAGTGCAGCAGGATGGCGCGAGCC CCCACACGGGTGAAGGGAATCCAGAGATTCTCAACTCGGCGGGGATGGGG CATGGGTGGTTGGTAGAGCTTGTGACTCAGCCTGCCCAGTCGCCTGATTT TAACGTCAACGACTTGGGCTTCTTTGCATCTCTCAAGTCAAGGGTGTGGG CGATGAACGCGTGTGCGGTAGAGGAGTTGGTGGAGACCATCTTCGAGCAG TACGAGGAGTACGATGGGGAGACGTTAGAACGGGTGTGGCAAAGCCTTTT CAAGGTTTTACAACCAAACACTCCGTAAGGTGGGCGACAACGACTTTGCA GTAGAACACACCGGGGTGGCAAAGCGACAGAGGGAGGGGACGTTGGAGAG GGTGGTAAAATACGACAAGGAGGCTTTAGAGAAGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig783:50129..51065-

>mRNA_P-littoralis_Contig783.11.1 ID=mRNA_P-littoralis_Contig783.11.1|Name=mRNA_P-littoralis_Contig783.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig783:50129..51065- (Pylaiella littoralis U1_48)
ATGGTCCACGTGGACGAGAGTTGGTTTTATCTCATGAGGGAGAAAGAGAA
TGTTCGAGTGTTCCCAGGCGAGGAAGTTCTTGGGGCCCCCCGCGTTCAAC
ACAAGAGCCACCTTCCCAAGATCATGGTCATTGTGGCAAACGCTCGCCCG
GACCCTGCTCACAACTTCGACGGCAAGATCGGCATCAGGCGGATTTGTGT
CATCAAAACCGCCCAGCGAGCGTCCGAGAGGAGGAAGAGGGGCGAAGAGT
ACGAATTCGACTGCACCATCGACGCGGAGTGGTACAAGGACTGGTACATC
GACGTGCTTCTGCCTGAGATCAATAAGAAGATGCCTTGGTAA
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