mRNA_P-littoralis_Contig782.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig782.39.1
Unique NamemRNA_P-littoralis_Contig782.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.390e-21
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 YLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFVEVV 192
            YLI++ R +VLYY+ GW+ASR WTHQRR NLSPDW R+V HNTYQSS+ A A +P++  F EVV
Sbjct:  258 YLISQSRGQVLYYVCGWMASRAWTHQRRRNLSPDWYRIVEHNTYQSSEMAKARDPMIGQFAEVV 321          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5KGF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.090e-19
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    7 IAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDF 180
            I KP  +VLYYIAGW AS+ WTH RRHNLS DWVRVV+HNT +S  EAI  + +LRDF
Sbjct:   71 ITKPCGQVLYYIAGWAASKAWTHHRRHNLSQDWVRVVQHNTRRSRGEAICTDSMLRDF 128          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5JQL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-18
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 YLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLR 174
            Y I K R +VLYYIAGW AS+ WTH+RRHNLS DWVRVV+HNT +SS EAI  + +LR
Sbjct:  158 YQITKSRGQVLYYIAGWAASKAWTHKRRHNLSQDWVRVVQHNTRRSSGEAICTDSMLR 215          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.370e-18
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 YLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFV 183
            Y I++PR +VLYYIAGW AS+  THQ RHNLS DWVRVV+HNT +SS+EAI    +LRDFV
Sbjct:  176 YQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAIFTNVMLRDFV 236          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5JX42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX42_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.330e-16
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 YLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEAIAHEPVLRDFV 183
            Y I++PR +VL+ IAGW  S+  THQ RHNLS DWVRVV+HNT +SS+EA+    +LRDFV
Sbjct:   37 YQISRPRGQVLHDIAGWATSKALTHQARHNLSQDWVRVVQHNTRRSSREAMFTNVMLRDFV 97          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 YLIAKPRARVLYYIAGWLASRVWTHQRRHNLS 96
            Y I +PR +VLYY+AGW AS+ WTHQR HNLS
Sbjct:   27 YQITQPRGQVLYYVAGWAASKAWTHQRSHNLS 58          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.780e-7
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    7 IAKPRARVLYYIAGWLASRVWTHQRRHNLSP-DWVRVVRHNTYQSSQEAIAHEPVLRDFV 183
            + KPRA+VLYYI+GWL S+VWTH RR  +   +WV  V  N   S+  A+  +  L   V
Sbjct:  196 VTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLV 255          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.080e-6
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   16 PRARVLYYIAGWLASRVWTHQRRHNLSP-DWVRVVRHNTYQSSQEAIAHEPVLRDFVEVV 192
            PR R+LYYIAGW+ S++ TH RRHN+   +W+ +V  + Y S + A  +E  LR   E V
Sbjct:  155 PRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEV 214          
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 3.270e-5
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:    7 IAKPRARVLYYIAGWLASRVWTHQRRHNLSP-DWVRVVRHNTYQSSQEAIAHEPVLRDFV 183
            + KPRA+VLYYI+GWL S+ W H RR  +   +WV  V  N   S   A+  +  L   V
Sbjct:  138 VTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLV 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig782.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.390e-2164.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF3_9PHAE1.090e-1967.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQL1_9PHAE1.100e-1867.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE2.370e-1867.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX42_9PHAE9.330e-1660.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY9_9PHAE2.560e-768.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI5.780e-745.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M3_9PHAE1.080e-645.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G5R0_ECTSI3.270e-541.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig782contigP-littoralis_Contig782:115659..115851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.5113075-CDS-P-littoralis_Contig782:115658..1158501680791609.5113075-CDS-P-littoralis_Contig782:115658..115850Pylaiella littoralis U1_48CDSP-littoralis_Contig782 115659..115850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig782.39.1prot_P-littoralis_Contig782.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig782 115659..115850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig782.39.1

>prot_P-littoralis_Contig782.39.1 ID=prot_P-littoralis_Contig782.39.1|Name=mRNA_P-littoralis_Contig782.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
YLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSSQEA
IAHEPVLRDFVEVV
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mRNA from alignment at P-littoralis_Contig782:115659..115851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig782.39.1 ID=mRNA_P-littoralis_Contig782.39.1|Name=mRNA_P-littoralis_Contig782.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=193bp|location=Sequence derived from alignment at P-littoralis_Contig782:115659..115851+ (Pylaiella littoralis U1_48)
TATCTGATTGCAAAACCGCGCGCGAGAGTCCTGTACTACATTGCCGGGTG GTTGGCGAGCAGGGTTTGGACCCATCAGAGAAGACACAACCTTTCCCCAG ATTGGGTGCGTGTCGTCCGCCACAACACTTACCAGTCCAGTCAGGAGGCG ATAGCTCATGAACCTGTGCTTAGAGATTTCGTAGAGGTAGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig782:115659..115851+

>mRNA_P-littoralis_Contig782.39.1 ID=mRNA_P-littoralis_Contig782.39.1|Name=mRNA_P-littoralis_Contig782.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig782:115659..115851+ (Pylaiella littoralis U1_48)
TATCTGATTGCAAAACCGCGCGCGAGAGTCCTGTACTACATTGCCGGGTG
GTTGGCGAGCAGGGTTTGGACCCATCAGAGAAGACACAACCTTTCCCCAG
ATTGGGTGCGTGTCGTCCGCCACAACACTTACCAGTCCAGTCAGGAGGCG
ATAGCTCATGAACCTGTGCTTAGAGATTTCGTAGAGGTAGTG
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