mRNA_P-littoralis_Contig1197.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1197.23.1
Unique NamemRNA_P-littoralis_Contig1197.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.210e-35
Identity = 70/136 (51.47%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 DCRRKCLPTGRMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIA----LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRL 396
            DCRR    T ++ WEY+G+  +G   DWLSED +L+  SFTPLQLDGF+ALWHLYHP     ++AN  P  ++     LSR  AL+L+PI   ++K+   G+ L GQVFDF   YWRV Y+D NWEE+ R EL+RL
Sbjct:  746 DCRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP-----QQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873          
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.120e-34
Identity = 68/135 (50.37%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 DCRRKCLPTG-RMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLLR 402
            DCRR    +G R  WEYKG++  GV  DWL E+ +   +SFTPLQLD F+ALWHLY P +  +  A    +    LSR  AL ++PIG   QK+   G+ L GQV+D+   YWRVRYTD NWEE++R EL+RL R
Sbjct: 1750 DCRRVQPASGMRTVWEYKGKSGNGVVSDWLPEETM--RRSFTPLQLDCFVALWHLYFPQLA-NASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881          
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.960e-20
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQK---DFGSGLTLN-GQVFDFKDRYWRVRYTDNNWEEVTRTELK 390
            +WEY+G+ Q G    WL+ED +    SF+PLQLD F ALW  YH  ++ P              +R+AALQ +P+ T V K   D    + L+ G+V DF D YWRV ++D +WEE TR EL+
Sbjct: 1565 AWEYRGKYQDGTTSSWLTEDTV--KDSFSPLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685          
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.570e-19
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKR 393
            +WEYKG+ Q G   DWL+ED +    SF+PLQL  F AL   YH  ++ P              +R+AAL+ +P+ T V ++     G+ +   G+V DF D YWRV+++D++WEE+TR EL++
Sbjct: 2110 AWEYKGKYQEGTPSDWLTEDTV--KDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQ 2231          
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.710e-16
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIAL-SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKR 393
            +WEY+   Q G    W +E+++    SF+PLQLD F AL+ L++        A    R    + SR+ ALQL+P+GT V ++F    G         FD  D YWRV Y D +WEE+T++E+ +
Sbjct: 1813 TWEYQDHYQDGALSPWPTEEEV--GDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDK 1934          
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.330e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  223 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLL 399
            L R  ++Q+   G   QKDFG G  L GQVF  +DRYWRVRY++ NWEE+TR EL+R L
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126          
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.580e-8
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  181 PSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLT-LNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLLR 402
            P +     P+    + R++ALQLYPIGT + ++     G  +T + G V +F   YWR+RY D  WE++TRT++K  ++
Sbjct:   59 PRQRDRPTPKEDAGMRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JMP6_9PHAE4.210e-3551.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE2.120e-3450.37RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KNP4_9PHAE3.960e-2042.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE2.570e-1939.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAJ3_9PHAE1.710e-1637.10RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBF4_9PHAE3.330e-1255.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCZ7_9STRA5.580e-836.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:51258..51681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps5262
PFAMsPHD_2,RGS
Model size424
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00022
EggNOG OGs2ENP4@1|root,2SS24@2759|Eukaryota,2XDYK@2836|Bacillariophyta
DescriptionPHD zinc finger
Cds size375
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.8088336-UTR-P-littoralis_Contig1197:51257..512731680789503.8088336-UTR-P-littoralis_Contig1197:51257..51273Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 51258..51273 -
1680789503.8326416-UTR-P-littoralis_Contig1197:51648..516811680789503.8326416-UTR-P-littoralis_Contig1197:51648..51681Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 51649..51681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.8199074-CDS-P-littoralis_Contig1197:51273..516481680789503.8199074-CDS-P-littoralis_Contig1197:51273..51648Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 51274..51648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.23.1prot_P-littoralis_Contig1197.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1197 51274..51648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1197.23.1

>prot_P-littoralis_Contig1197.23.1 ID=prot_P-littoralis_Contig1197.23.1|Name=mRNA_P-littoralis_Contig1197.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITP
SEEANHDPRAAIALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRY
WRVRYTDNNWEEVTRTELKRLLRA*
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mRNA from alignment at P-littoralis_Contig1197:51258..51681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1197.23.1 ID=mRNA_P-littoralis_Contig1197.23.1|Name=mRNA_P-littoralis_Contig1197.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=424bp|location=Sequence derived from alignment at P-littoralis_Contig1197:51258..51681- (Pylaiella littoralis U1_48)
GACTGCCGCAGAAAATGTCTACCGACAGGCCGAATGAGTTGGGAATACAA AGGTCGCACTCAAGCAGGAGTAGAGGTGGACTGGTTATCGGAAGATCAGA TTTTGAAGGCTAAATCGTTCACACCGCTCCAGTTAGATGGTTTCATAGCT CTTTGGCATCTGTACCACCCCAATATCACCCCCTCGGAAGAGGCGAACCA TGATCCCCGCGCCGCTATCGCCCTCTCTCGCAAAGCCGCCTTACAATTGT ATCCGATAGGTACCCACGTGCAGAAGGATTTCGGTTCTGGTCTAACCCTG AACGGACAGGTGTTCGACTTTAAAGATCGATACTGGAGGGTGCGCTACAC GGACAACAACTGGGAGGAAGTCACCCGCACCGAACTCAAGCGTTTACTGC GGGCTTGATAGACTTAGGGTTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1197:51258..51681-

>mRNA_P-littoralis_Contig1197.23.1 ID=mRNA_P-littoralis_Contig1197.23.1|Name=mRNA_P-littoralis_Contig1197.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1197:51258..51681- (Pylaiella littoralis U1_48)
ATGAGTTGGGAATACAAAGGTCGCACTCAAGCAGGAGTAGAGGTGGACTG
GTTATCGGAAGATCAGATTTTGAAGGCTAAATCGTTCACACCGCTCCAGT
TAGATGGTTTCATAGCTCTTTGGCATCTGTACCACCCCAATATCACCCCC
TCGGAAGAGGCGAACCATGATCCCCGCGCCGCTATCGCCCTCTCTCGCAA
AGCCGCCTTACAATTGTATCCGATAGGTACCCACGTGCAGAAGGATTTCG
GTTCTGGTCTAACCCTGAACGGACAGGTGTTCGACTTTAAAGATCGATAC
TGGAGGGTGCGCTACACGGACAACAACTGGGAGGAAGTCACCCGCACCGA
ACTCAAGCGTTTACTGCGGGCTTGA
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