mRNA_P-littoralis_Contig1197.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE) HSP 1 Score: 138 bits (347), Expect = 4.210e-35 Identity = 70/136 (51.47%), Postives = 91/136 (66.91%), Query Frame = 1
Query: 1 DCRRKCLPTGRMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIA----LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRL 396
DCRR T ++ WEY+G+ +G DWLSED +L+ SFTPLQLDGF+ALWHLYHP ++AN P ++ LSR AL+L+PI ++K+ G+ L GQVFDF YWRV Y+D NWEE+ R EL+RL
Sbjct: 746 DCRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP-----QQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.120e-34 Identity = 68/135 (50.37%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 1 DCRRKCLPTG-RMSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLLR 402
DCRR +G R WEYKG++ GV DWL E+ + +SFTPLQLD F+ALWHLY P + + A + LSR AL ++PIG QK+ G+ L GQV+D+ YWRVRYTD NWEE++R EL+RL R
Sbjct: 1750 DCRRVQPASGMRTVWEYKGKSGNGVVSDWLPEETM--RRSFTPLQLDCFVALWHLYFPQLA-NASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.960e-20 Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQK---DFGSGLTLN-GQVFDFKDRYWRVRYTDNNWEEVTRTELK 390
+WEY+G+ Q G WL+ED + SF+PLQLD F ALW YH ++ P +R+AALQ +P+ T V K D + L+ G+V DF D YWRV ++D +WEE TR EL+
Sbjct: 1565 AWEYRGKYQDGTTSSWLTEDTV--KDSFSPLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.570e-19 Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKR 393
+WEYKG+ Q G DWL+ED + SF+PLQL F AL YH ++ P +R+AAL+ +P+ T V ++ G+ + G+V DF D YWRV+++D++WEE+TR EL++
Sbjct: 2110 AWEYKGKYQEGTPSDWLTEDTV--KDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQ 2231
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.710e-16 Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query: 37 SWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAIAL-SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKR 393
+WEY+ Q G W +E+++ SF+PLQLD F AL+ L++ A R + SR+ ALQL+P+GT V ++F G FD D YWRV Y D +WEE+T++E+ +
Sbjct: 1813 TWEYQDHYQDGALSPWPTEEEV--GDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDK 1934
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 3.330e-12 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 223 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLL 399
L R ++Q+ G QKDFG G L GQVF +DRYWRVRY++ NWEE+TR EL+R L
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 5.580e-8 Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 181 PSEEANHDPRAAIALSRKAALQLYPIGTHVQKDF----GSGLT-LNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLLR 402
P + P+ + R++ALQLYPIGT + ++ G +T + G V +F YWR+RY D WE++TRT++K ++
Sbjct: 59 PRQRDRPTPKEDAGMRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1197.23.1 >prot_P-littoralis_Contig1197.23.1 ID=prot_P-littoralis_Contig1197.23.1|Name=mRNA_P-littoralis_Contig1197.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp MSWEYKGRTQAGVEVDWLSEDQILKAKSFTPLQLDGFIALWHLYHPNITPback to top mRNA from alignment at P-littoralis_Contig1197:51258..51681- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1197.23.1 ID=mRNA_P-littoralis_Contig1197.23.1|Name=mRNA_P-littoralis_Contig1197.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=424bp|location=Sequence derived from alignment at P-littoralis_Contig1197:51258..51681- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1197:51258..51681- >mRNA_P-littoralis_Contig1197.23.1 ID=mRNA_P-littoralis_Contig1197.23.1|Name=mRNA_P-littoralis_Contig1197.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1197:51258..51681- (Pylaiella littoralis U1_48)back to top |