mRNA_P-littoralis_Contig78.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.7.1
Unique NamemRNA_P-littoralis_Contig78.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.540e-71
Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHSL 786
            V+P  SQCAC IHTQQ LYL+AL FLMG+IH +CDC C+WCDD GCK+W+ MC  L  FS+ LAC KV+LL GD+ GGFEF GRKPAC A  C+ECGFGKP GIPT+C A A + ER V WIRF DQ M DG VH KQ+LPQ+GKL +LW+EF AHS+
Sbjct:  378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSV 535          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.140e-68
Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHSLL 789
            V+P  SQCAC IHTQQ LYL+AL FLMG+IH +CDC C+WCDD GCK+W+ MC  L  FS+ LAC KV+LL GD+ GGFEF GRKPAC A  C+ECGFGKP GIPT+C A A + ER V WIRF DQ M DG VH KQ+LPQ+GKL +LW+EF AHS +
Sbjct:  378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSYM 536          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.560e-64
Identity = 98/157 (62.42%), Postives = 109/157 (69.43%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            VEPKVSQCAC IHTQQ LY  A   LM AIH NC+CTC+WCD +GC KW  MC  LH+FSE LAC K   LA    G FE  GRKPACVA  C E GFG P GIP +C A  S A+R VGW+RF DQ M DG VH KQ+LPQ+GKL +LW+E   HS
Sbjct:  125 VEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGSGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLPQAGKLGDLWDEVVEHS 281          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 4.390e-64
Identity = 104/158 (65.82%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            VEPKVSQCAC IHTQQ LYL A   LM AIH NCDCTC WCD  +GC KW  MC  LH+FSE LAC KVD L  D  G FE  GRKPACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M DG VH KQ+LPQ GKL +LW+EF  HS
Sbjct:  390 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 547          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.390e-63
Identity = 105/179 (58.66%), Postives = 120/179 (67.04%), Query Frame = 1
Query:  262 GCFALPTPNRVS----RFIVPVEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            G FA P  + +S    R  V VEPKVSQCAC IHTQQ LYL A   LM A+H NCDCTC WCD  +GC KW  MC  LH+FSE L C KVD L  D  G FE  G KPACVA  C+EC FG P+ IP +C A  S A+R VGW+RF DQ M DG VH KQ++PQ+GKL +LW+EF  HS
Sbjct:   81 GLFADPLSSFLSVSTVRLCVTVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALDCEKVDCLEEDRGGRFEHWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLGDLWKEFVEHS 259          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 2.330e-63
Identity = 104/158 (65.82%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            VEPKVSQCAC IHTQQ LYL A   LM AIH NCDCTC WCD  +GC KW  MC  LH+FSE LAC KVD L  D  G FE  GRKPACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M DG VH KQ+LPQ GKL +LW+EF  HS
Sbjct: 1014 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 1171          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 4.500e-62
Identity = 99/158 (62.66%), Postives = 110/158 (69.62%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            VEPKVS+CAC  HTQQ + L A   LM A H NCDCTC WCD  +GC KW  MC  LH+FSE LAC KVD L  D  G FE  GRKPACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M DG VH KQ+LPQ GKL +LW+EF  HS
Sbjct:   48 VEPKVSKCACQTHTQQGIDLKAFEMLMPATHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 205          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.880e-59
Identity = 98/158 (62.03%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            VEPK+S CAC IHTQQ LYL  +  LM A+H NCDCTC  CD  +GC KW  MC  LH+FSE LAC KVD L  D  G FE  GRKPACVA  C+ECGFG P GIP +C A  S A+R VGW+RF DQ M DG VH KQ++PQ+GKL +LW+EF  HS
Sbjct:  125 VEPKISPCACQIHTQQGLYLK-VEMLMPAMHSNCDCTCKRCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGKFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHS 281          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 8.080e-54
Identity = 82/133 (61.65%), Postives = 94/133 (70.68%), Query Frame = 1
Query:  388 LMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
            LM A+H NCDCTC WCD  +GC KW  MC  LH+FSE LAC KVD L  D  G FE  GRKPACVA  C+ECGFG P GIP  C A  S A+R VGW+RF +Q M DG VH KQ++PQ+GKL +LW+EF  HS
Sbjct:    2 LMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVMEDGKVHKKQQVPQAGKLDDLWKEFVEHS 134          
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.220e-28
Identity = 70/157 (44.59%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  322 KVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCD-DNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHSLL 789
            K  QCAC IHTQQ LYL ALR +       CDC   WC   +G   W GM   L  FSE L CPKVDL  GD      F GRKPAC +  C  CGFGK  GIPT C+A    +++ V W  + D +         Q++ + GKL +LW +F+ HS L
Sbjct:  388 KTDQCACKIHTQQDLYLKALREVNVEGRATCDCR--WCSAPDGHAAWKGMWEHLGTFSEALLCPKVDLREGDPEDEVGFMGRKPACSSMDCMHCGFGKEGGIPT-CKALEM-SQQLVKWTHYEDVERPGKKPLQNQQVEKEGKLCDLWADFKKHSKL 540          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF90_9PHAE1.540e-7166.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE1.140e-6866.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI39_9PHAE1.560e-6462.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE4.390e-6465.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY26_9PHAE1.390e-6358.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE2.330e-6365.82MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KXG9_9PHAE4.500e-6262.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE1.880e-5962.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4W3_9PHAE8.080e-5461.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDQ3_9PHAE1.220e-2844.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:62540..63328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size789
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.2683241-UTR-P-littoralis_Contig78:62539..627701680791603.2683241-UTR-P-littoralis_Contig78:62539..62770Pylaiella littoralis U1_48UTRP-littoralis_Contig78 62540..62770 -
1680791603.291201-UTR-P-littoralis_Contig78:63160..633281680791603.291201-UTR-P-littoralis_Contig78:63160..63328Pylaiella littoralis U1_48UTRP-littoralis_Contig78 63161..63328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791603.279842-CDS-P-littoralis_Contig78:62770..631601680791603.279842-CDS-P-littoralis_Contig78:62770..63160Pylaiella littoralis U1_48CDSP-littoralis_Contig78 62771..63160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.7.1prot_P-littoralis_Contig78.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 62771..63160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.7.1

>prot_P-littoralis_Contig78.7.1 ID=prot_P-littoralis_Contig78.7.1|Name=mRNA_P-littoralis_Contig78.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MVGLLLRELARRVFTRGEDQWEYCFFFLLTVGCFALPTPNRVSRFIVPVE
PKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGM
CTSLHAFSEELACPKVDLLAGDASGGFEF*
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mRNA from alignment at P-littoralis_Contig78:62540..63328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.7.1 ID=mRNA_P-littoralis_Contig78.7.1|Name=mRNA_P-littoralis_Contig78.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig78:62540..63328- (Pylaiella littoralis U1_48)
TCAAAAAGGAGCTGCTGGAGGAAGACCCCTCCTTCCAAGACCCTGGCCGG ACAACATTTCTGTCCACCCGGTGTGGATGTTTAGGTGGGTTGATGCGAGT TTGGAGTTCAGTCGTTGCCATGTACCACTCGGCAGGAGTTTACGTGAATT TTTGCGAGTCTACAGTTTATGGTGGGGCTCTTATTGCGTGAGCTAGCTAG AAGGGTTTTTACTCGCGGGGAAGATCAATGGGAATACTGTTTTTTTTTTC TTCTGACCGTCGGTTGTTTCGCTCTTCCCACCCCAAACCGTGTTTCCCGT TTTATCGTTCCGGTGGAGCCGAAGGTGTCGCAGTGTGCCTGCATGATCCA CACCCAGCAGAAGTTGTATCTCGACGCCCTCAGATTTTTGATGGGCGCAA TTCACGTCAACTGTGACTGCACGTGCAGCTGGTGCGATGACAACGGTTGT AAGAAGTGGGCGGGGATGTGCACGAGTCTCCACGCGTTTTCGGAAGAGCT CGCCTGCCCGAAGGTAGACTTGCTGGCGGGAGATGCGTCCGGTGGGTTTG AGTTTTGAGGGAGAAAGCCAGCGTGCGTGGCGGGTACATGCGCTGAGTGC GGGTTTGGAAAGCCGAACGGCATCCCTACCGACTGCCAGGCTTTCGCGAG CCATGCCGAGAGAACGGTGGGGTGGATTCGCTTCATGGACCAAAAAATGT GGGATGGGACCGTGCACTCGAAGCAGGAACTGCCGCAGAGCGGAAAGCTA CGCGAGCTGTGGGAAGAATTCAGGGCGCACTCTCTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:62540..63328-

>mRNA_P-littoralis_Contig78.7.1 ID=mRNA_P-littoralis_Contig78.7.1|Name=mRNA_P-littoralis_Contig78.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig78:62540..63328- (Pylaiella littoralis U1_48)
ATGGTGGGGCTCTTATTGCGTGAGCTAGCTAGAAGGGTTTTTACTCGCGG
GGAAGATCAATGGGAATACTGTTTTTTTTTTCTTCTGACCGTCGGTTGTT
TCGCTCTTCCCACCCCAAACCGTGTTTCCCGTTTTATCGTTCCGGTGGAG
CCGAAGGTGTCGCAGTGTGCCTGCATGATCCACACCCAGCAGAAGTTGTA
TCTCGACGCCCTCAGATTTTTGATGGGCGCAATTCACGTCAACTGTGACT
GCACGTGCAGCTGGTGCGATGACAACGGTTGTAAGAAGTGGGCGGGGATG
TGCACGAGTCTCCACGCGTTTTCGGAAGAGCTCGCCTGCCCGAAGGTAGA
CTTGCTGGCGGGAGATGCGTCCGGTGGGTTTGAGTTTTGA
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