mRNA_P-littoralis_Contig78.7.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE) HSP 1 Score: 238 bits (606), Expect = 1.540e-71 Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHSL 786
V+P SQCAC IHTQQ LYL+AL FLMG+IH +CDC C+WCDD GCK+W+ MC L FS+ LAC KV+LL GD+ GGFEF GRKPAC A C+ECGFGKP GIPT+C A A + ER V WIRF DQ M DG VH KQ+LPQ+GKL +LW+EF AHS+
Sbjct: 378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSV 535
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE) HSP 1 Score: 238 bits (606), Expect = 1.140e-68 Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHSLL 789
V+P SQCAC IHTQQ LYL+AL FLMG+IH +CDC C+WCDD GCK+W+ MC L FS+ LAC KV+LL GD+ GGFEF GRKPAC A C+ECGFGKP GIPT+C A A + ER V WIRF DQ M DG VH KQ+LPQ+GKL +LW+EF AHS +
Sbjct: 378 VDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSYM 536
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE) HSP 1 Score: 213 bits (541), Expect = 1.560e-64 Identity = 98/157 (62.42%), Postives = 109/157 (69.43%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDDNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
VEPKVSQCAC IHTQQ LY A LM AIH NC+CTC+WCD +GC KW MC LH+FSE LAC K LA G FE GRKPACVA C E GFG P GIP +C A S A+R VGW+RF DQ M DG VH KQ+LPQ+GKL +LW+E HS
Sbjct: 125 VEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGSGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLPQAGKLGDLWDEVVEHS 281
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 224 bits (572), Expect = 4.390e-64 Identity = 104/158 (65.82%), Postives = 113/158 (71.52%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
VEPKVSQCAC IHTQQ LYL A LM AIH NCDCTC WCD +GC KW MC LH+FSE LAC KVD L D G FE GRKPACVA C+ECGFG P GIP +C A S A+R VGW+RF DQ M DG VH KQ+LPQ GKL +LW+EF HS
Sbjct: 390 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 547
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.390e-63 Identity = 105/179 (58.66%), Postives = 120/179 (67.04%), Query Frame = 1
Query: 262 GCFALPTPNRVS----RFIVPVEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
G FA P + +S R V VEPKVSQCAC IHTQQ LYL A LM A+H NCDCTC WCD +GC KW MC LH+FSE L C KVD L D G FE G KPACVA C+EC FG P+ IP +C A S A+R VGW+RF DQ M DG VH KQ++PQ+GKL +LW+EF HS
Sbjct: 81 GLFADPLSSFLSVSTVRLCVTVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALDCEKVDCLEEDRGGRFEHWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLGDLWKEFVEHS 259
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 224 bits (572), Expect = 2.330e-63 Identity = 104/158 (65.82%), Postives = 113/158 (71.52%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
VEPKVSQCAC IHTQQ LYL A LM AIH NCDCTC WCD +GC KW MC LH+FSE LAC KVD L D G FE GRKPACVA C+ECGFG P GIP +C A S A+R VGW+RF DQ M DG VH KQ+LPQ GKL +LW+EF HS
Sbjct: 1014 VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 1171
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE) HSP 1 Score: 214 bits (546), Expect = 4.500e-62 Identity = 99/158 (62.66%), Postives = 110/158 (69.62%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
VEPKVS+CAC HTQQ + L A LM A H NCDCTC WCD +GC KW MC LH+FSE LAC KVD L D G FE GRKPACVA C+ECGFG P GIP +C A S A+R VGW+RF DQ M DG VH KQ+LPQ GKL +LW+EF HS
Sbjct: 48 VEPKVSKCACQTHTQQGIDLKAFEMLMPATHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 205
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.880e-59 Identity = 98/158 (62.03%), Postives = 112/158 (70.89%), Query Frame = 1
Query: 313 VEPKVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
VEPK+S CAC IHTQQ LYL + LM A+H NCDCTC CD +GC KW MC LH+FSE LAC KVD L D G FE GRKPACVA C+ECGFG P GIP +C A S A+R VGW+RF DQ M DG VH KQ++PQ+GKL +LW+EF HS
Sbjct: 125 VEPKISPCACQIHTQQGLYLK-VEMLMPAMHSNCDCTCKRCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGKFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHS 281
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE) HSP 1 Score: 180 bits (457), Expect = 8.080e-54 Identity = 82/133 (61.65%), Postives = 94/133 (70.68%), Query Frame = 1
Query: 388 LMGAIHVNCDCTCSWCDD-NGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHS 783
LM A+H NCDCTC WCD +GC KW MC LH+FSE LAC KVD L D G FE GRKPACVA C+ECGFG P GIP C A S A+R VGW+RF +Q M DG VH KQ++PQ+GKL +LW+EF HS
Sbjct: 2 LMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVMEDGKVHKKQQVPQAGKLDDLWKEFVEHS 134
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.220e-28 Identity = 70/157 (44.59%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 322 KVSQCACMIHTQQKLYLDALRFLMGAIHVNCDCTCSWCD-DNGCKKWAGMCTSLHAFSEELACPKVDLLAGDASGGFEF*GRKPACVAGTCAECGFGKPNGIPTDCQAFASHAERTVGWIRFMDQKMWDGTVHSKQELPQSGKLRELWEEFRAHSLL 789
K QCAC IHTQQ LYL ALR + CDC WC +G W GM L FSE L CPKVDL GD F GRKPAC + C CGFGK GIPT C+A +++ V W + D + Q++ + GKL +LW +F+ HS L
Sbjct: 388 KTDQCACKIHTQQDLYLKALREVNVEGRATCDCR--WCSAPDGHAAWKGMWEHLGTFSEALLCPKVDLREGDPEDEVGFMGRKPACSSMDCMHCGFGKEGGIPT-CKALEM-SQQLVKWTHYEDVERPGKKPLQNQQVEKEGKLCDLWADFKKHSKL 540 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig78.7.1 >prot_P-littoralis_Contig78.7.1 ID=prot_P-littoralis_Contig78.7.1|Name=mRNA_P-littoralis_Contig78.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp MVGLLLRELARRVFTRGEDQWEYCFFFLLTVGCFALPTPNRVSRFIVPVEback to top mRNA from alignment at P-littoralis_Contig78:62540..63328- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig78.7.1 ID=mRNA_P-littoralis_Contig78.7.1|Name=mRNA_P-littoralis_Contig78.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=789bp|location=Sequence derived from alignment at P-littoralis_Contig78:62540..63328- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig78:62540..63328- >mRNA_P-littoralis_Contig78.7.1 ID=mRNA_P-littoralis_Contig78.7.1|Name=mRNA_P-littoralis_Contig78.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig78:62540..63328- (Pylaiella littoralis U1_48)back to top |