mRNA_P-littoralis_Contig777.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig777.1.1
Unique NamemRNA_P-littoralis_Contig777.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.860e-59
Identity = 87/125 (69.60%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+CDAQYRI AW MNCPGSQNDRTAF  SGF KLL GLP+G+++VGDAAY  S+ V+VP+PG  +S SQDA NYY+SQCR+AIEQT+GILVR WGILWRP+EVR+     +V ++VRLHNFCRD+
Sbjct:  212 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDR 336          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 5.120e-59
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+CDAQYRI AWTM+CPGSQNDRTAF  + F KLL GLP+G+++VGDAAY  S+ V+VP+PG  +S SQDA NYY+SQCR+AIEQT+GILVR WGILWRP+EVR+     +V ++VRLHNFCRD+
Sbjct:   60 AVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDR 184          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.690e-53
Identity = 81/123 (65.85%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCR 369
            A+C+A+Y+I AWTMNCPGS NDRTAFK SGF ++L+ LPKG YIVGD AYP SD VLVPYPG  ++ SQD+ N+Y SQ RI IEQ FG +V+TWGILWRPL+V+LG V+ ++ ++VRLHNF R
Sbjct:  153 AVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNFLR 275          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 5.680e-51
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    4 ICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCR 369
            +C+A+Y I AWTMNCPGS NDRTAFK S F  +L+ LP G YIVGDAAYP SD VLVPYPG  ++ SQDA N+Y SQ RI+IEQ FGI+V+TWGILWRPL++RL  V+ ++ S+VRLHNF R
Sbjct:  220 VCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLR 341          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.730e-47
Identity = 78/125 (62.40%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+CDAQYRI AW MNCPGSQNDRTAF  SGF KLL GLP+G+++VGDAAY  S+ V+VP+PG  +S SQDA NYY+SQCR+AIEQT+GILV   G+    +E        +V ++VRLHNFCRD+
Sbjct:  141 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVGMAKVVVE-------HVVNAVVRLHNFCRDR 258          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.700e-46
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    4 ICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCR 369
            IC+A Y I  WTMNCPGSQNDRTAFK SGF  LL  +P   +IVGDAAYP S+ VLVP PG  ++ SQDA N+Y SQ RI+IEQ FGILV+TW ILW+PL +RL  V  ++ ++VRLHNF R
Sbjct:  224 ICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLR 345          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.060e-35
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG ++   +D+ N++LSQ R+ IEQ+FGILV TWGILWRPL V+LG  A L+ +L  LHNF +D+
Sbjct:  253 AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNFLQDE 377          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.090e-35
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG  +   +D+ N++LSQ R+ IEQ+FGILV TWGILWRPL V+    A L+ +L  LHNF +D+
Sbjct:   96 AMCTADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNFLQDE 220          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5K6X9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 8.150e-35
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+C   YR  A     PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG ++   +D+ N++LSQ R+ IEQ+FGILV TWGILW PL ++LG    L+ +L+ LHNF +D+
Sbjct:   62 AMCTVNYRFCAMPAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWTPLRMQLGGRGDLITALLHLHNFLQDE 186          
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Match: A0A6H5L3C4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C4_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.510e-34
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAYPGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRPLEVRLGSVAPLVESLVRLHNFCRDQ 375
            A+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG  +   +D+ N++LSQ R+ IEQ+FGILV TWGILWRPL V+ G  A L+ +L  LHNF +D+
Sbjct:  290 AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPPGEDSFNFHLSQVRVMIEQSFGILVATWGILWRPLHVQYGGRADLITALFHLHNFLQDE 414          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig777.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B6_9PHAE4.860e-5969.60DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE5.120e-5968.00DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE2.690e-5365.85DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE5.680e-5166.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE2.730e-4762.40DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE3.700e-4663.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNZ9_9PHAE1.060e-3550.40DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KQF5_9PHAE1.090e-3548.80DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K6X9_9PHAE8.150e-3547.20DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L3C4_9PHAE2.510e-3449.60DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig777contigP-littoralis_Contig777:7860..8483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size375
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.77e-26
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size375
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.6237445-CDS-P-littoralis_Contig777:7859..79641680791599.6237445-CDS-P-littoralis_Contig777:7859..7964Pylaiella littoralis U1_48CDSP-littoralis_Contig777 7860..7964 -
1680791599.647278-CDS-P-littoralis_Contig777:8213..84831680791599.647278-CDS-P-littoralis_Contig777:8213..8483Pylaiella littoralis U1_48CDSP-littoralis_Contig777 8214..8483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig777.1.1prot_P-littoralis_Contig777.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig777 7860..8483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig777.1.1

>prot_P-littoralis_Contig777.1.1 ID=prot_P-littoralis_Contig777.1.1|Name=mRNA_P-littoralis_Contig777.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEGLPKGYYIVGDAAY
PGSDVVLVPYPGIKVSESQDALNYYLSQCRIAIEQTFGILVRTWGILWRP
LEVRLGSVAPLVESLVRLHNFCRDQ
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mRNA from alignment at P-littoralis_Contig777:7860..8483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig777.1.1 ID=mRNA_P-littoralis_Contig777.1.1|Name=mRNA_P-littoralis_Contig777.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig777:7860..8483- (Pylaiella littoralis U1_48)
GCGATCTGCGATGCGCAGTACAGGATCAGGGCATGGACTATGAACTGCCC GGGAAGCCAGAACGACCGCACGGCTTTCAAGGTTTCCGGTTTCCCAAAGC TCCTCGAGGGGTTGCCGAAAGGCTACTACATCGTGGGGGACGCGGCGTAT CCGGGTTCCGACGTGGTTCTTGTTCCGTACCCGGGGATAAAGGTGTCGGA GAGCCAAGATGCGCTGAACTACTACCTGTCTCAGTGCAGGATCGCCATCG AACAGACCTTCGGCATACTGGTATGTTATACTTCTTAGCTTTAGTGCCCG CAGATGACCAACATTTAAGTCGCCGGATAATATTTCATGCTCACGTATGA AGCACGCAGCATTTACGCGGCATTGATGCGTAAGTCCACGCGGGAGGTTT ATTCATTTCATAAACGGGTTGTGCGTGAATTAGCTCTGAACCGTGTAAAG CACGCGCTCACGAACAGATGGCGATTCCATGCTTTCTTCGCTGTTGTTGT CTGTCTCCATGCTGACAAGGTGAGGACGTGGGGTATCCTGTGGAGGCCGC TGGAGGTCCGGCTGGGCAGTGTTGCTCCGCTCGTCGAGAGTCTTGTCCGG CTGCACAACTTCTGCCGAGATCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig777:7860..8483-

>mRNA_P-littoralis_Contig777.1.1 ID=mRNA_P-littoralis_Contig777.1.1|Name=mRNA_P-littoralis_Contig777.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig777:7860..8483- (Pylaiella littoralis U1_48)
GCGATCTGCGATGCGCAGTACAGGATCAGGGCATGGACTATGAACTGCCC
GGGAAGCCAGAACGACCGCACGGCTTTCAAGGTTTCCGGTTTCCCAAAGC
TCCTCGAGGGGTTGCCGAAAGGCTACTACATCGTGGGGGACGCGGCGTAT
CCGGGTTCCGACGTGGTTCTTGTTCCGTACCCGGGGATAAAGGTGTCGGA
GAGCCAAGATGCGCTGAACTACTACCTGTCTCAGTGCAGGATCGCCATCG
AACAGACCTTCGGCATACTGGTGAGGACGTGGGGTATCCTGTGGAGGCCG
CTGGAGGTCCGGCTGGGCAGTGTTGCTCCGCTCGTCGAGAGTCTTGTCCG
GCTGCACAACTTCTGCCGAGATCAA
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