mRNA_P-littoralis_Contig775.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig775.29.1
Unique NamemRNA_P-littoralis_Contig775.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 3.560e-133
Identity = 192/256 (75.00%), Postives = 215/256 (83.98%), Query Frame = 2
Query:  122 MASAGEGGVDDLLPELALAVALAALREVQQDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            M++A EG V DL PE+ALA ALAAL ++QQDD LSDAE                  K D  TCAWAQ+LED+DL+D TS+ A+KFREDFRVPYPFFLRLVE+VK+KDWFAT QRDA+GR+CHPVEHKVLACLTIL RGN FGSIY LSWMS+  VQK FH+FC+HFATEMYD+HI+LPS+ NGELD+VMG+YEKLGFPGAMGSTDVTHI WSRCPYNQ RSYTGKEGKPTVGYQVTV+H GRVLAVTEGFTGSTND
Sbjct:    1 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTND 256          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 5.710e-108
Identity = 170/254 (66.93%), Postives = 196/254 (77.17%), Query Frame = 2
Query:  137 EGGVDD--LLPELALAVALAALREVQQDDFLSDAE-AEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            E GV D  LLP  ALAVAL AL EVQ++D   + E   PD  +P   R +RQRK   +E CAWA++LEDKDLE++ S T+++FR DFRVP  FFLRLV +VK K+WFATA  DA GRQ HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  FH FCKHFA EMYD+HIYLPS+ NGELD VM +Y++LGF GAMGS DVTHI W++CPYN  RSYTGKEG PT+GYQVTV+H GR  AVTEGFTGSTND
Sbjct:    3 ENGVGDDALLPATALAVALVALDEVQRNDLSQEEEDTAPDLTRPRLSRTQRQRKY--VERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTND 254          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 7.510e-107
Identity = 163/242 (67.36%), Postives = 188/242 (77.69%), Query Frame = 2
Query:  122 MASAGEGGVDDLLPELALAVALAALREVQQDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGR 847
            MA  G G  D LLP  ALAVAL AL EVQ++D LS  E +   + P  +  R QR++KD++TCAWAQ+LEDKDLED+ S T+++FR DFRVPY FFLRLV +VK K+WF TA  D  GR  HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  FHKFCKHFA EMYD+HIYLPS+ NGELD VM +Y++LGF GAMGS DVTHI WS+CPYN ARSYTGKEG PTVGYQVTV+H GR
Sbjct:    1 MAETGVGD-DALLPATALAVALVALDEVQRND-LSQEEEDTAPDLPRPRLSRTQRQRKDVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGR 240          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 3.370e-103
Identity = 163/256 (63.67%), Postives = 185/256 (72.27%), Query Frame = 2
Query:  122 MASAGEGGVDDLLPELALAVALAALREVQQDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            MA  G G  D LLP  ALA AL AL E                           RK+K++E CAWAQ+LEDKDLED+ S+++++FR DFRVP  FFLRLV +VK KDWF T+  DA  RQ HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  FHKFCKHFA EMYD+HIYLPS+ NGELD VM +Y++LGF GAMGS DVTHI WS+CPYN ARSYTGKEG PTVGYQVTV+H GR +AVTEGFT STND
Sbjct:    1 MAETGVG--DALLPATALAGALVALDE---------------------------RKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTND 227          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 4.740e-93
Identity = 149/249 (59.84%), Postives = 174/249 (69.88%), Query Frame = 2
Query:  143 GVDDLLPELALAVALAALREVQQDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            G+D LLP  ALAVAL A+ E+                                       LLEDKDLED+TS+TA++ R DFRVPY  FLRLV +VK K+WF+TA  DA G   HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  FHKFC+HFA EMYD+ I+LP++ +G+LD VM +Y++LGF GA+GS DVTHIAWSRCPYNQARSYTGKEG PT+ YQVTVDH GR +AVTEGFTGSTND
Sbjct:    5 GMDALLPATALAVALVAVHEL---------------------------------------LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTND 214          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 5.410e-85
Identity = 164/295 (55.59%), Postives = 191/295 (64.75%), Query Frame = 2
Query:   23 WLPSLLLLPLLLIAGGQRVTSSSLPARSGALYSMASAGEGGVDDLLPELAL-AVALAALREVQ-----QDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            WLPSL LL     AG    T  + P  S +L S+  A  G  D LLP  AL AV LAAL +VQ     Q D L + +  PD  +P  K  R QRK+KD+E CAWAQ+LEDKDL+D+ S+T+++FR DFRVPY FFLRL  +VK KDWF T+  DA GRQ HPVEHKVLA LTIL RGNCF SIY +SWMS+    KT                       N ELD VM +Y++LGF G+MGS DVTHI WS+CPYN ARSYTGKEG P +GYQV V H GR +AVTEGFT STND
Sbjct:    4 WLPSLALL-----AGAGSATRLTPPYIS-SLGSLPMAETGVGDALLPATALLAVTLAALDKVQRNDLSQKDLLEEEDRAPDLPRP--KLNRGQRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSA----KT-----------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTND 263          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 2.610e-83
Identity = 156/289 (53.98%), Postives = 183/289 (63.32%), Query Frame = 2
Query:   23 WLPSLLLLPLLLIAGGQRVTSSSLPARSGALYSMASAGEGGVDDLLPELALAVALAALREVQQDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            WLPSL LL     AGG   T  + P  S +L S+  A  G  D LLP  ALAV L AL EVQ++D   + E +   + P  K  R QRK+KD+E CAWA++LEDKDLED+ S+T+++FR DFRVPY FFLRL  +VK KDWF T+  DA GRQ H VEHKVLA LTIL RGNCF SIY +SWMS   VQ  FHKF KHFA EMYD+HIYLPS+ NGELD VM + ++LGF GAM S  VT                             V+H GR + VTEGFTGSTND
Sbjct:    4 WLPSLELL-----AGGGSATRLTPPYIS-SLDSLPMAETGVGDALLPATALAVVLVALDEVQRNDLSQEEEEDRAPDLPRPKLSRGQRKRKDVEKCAWAKMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFAREMYDEHIYLPSEQNGELDHVMEQCDRLGFLGAMSSMGVT-----------------------------VNHAGRAIVVTEGFTGSTND 257          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 5.560e-79
Identity = 139/263 (52.85%), Postives = 181/263 (68.82%), Query Frame = 2
Query:  140 GGVDDLLPELALAVALAALREVQQ---------DDFLSDAEAEP-DEEQPLEKRPRRQRKKKDIETCAWAQ-LLEDKDLEDTTSVTAE--KFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            GG+D        AVA A+L+++Q+         +DF  D E +  D+E   E + RR   +KD     W Q L+E ++  +T   T E  +FR +FRVPYPFF+ LVE+V+ +DWF T + D  GRQ  PVE KVLACL IL+RGN F  IY +S++S   V  TFH+FCK+FA E+YD+++YLP+    +L KVM +Y+++GFPGA+GSTDVTHI W  CPYNQAR YTGKEGKPTV +QVTVDH+GRVLAVT GFTG+TND
Sbjct:   41 GGIDVPAAFATTAVATASLQQLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT--GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATND 301          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 5.900e-78
Identity = 142/257 (55.25%), Postives = 174/257 (67.70%), Query Frame = 2
Query:  170 ALAVALAALREVQQDDFLS-----------DAEAEPDEEQPLEKRPRRQRKKKDIETCAWA-QLLEDKDLE-----DTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 889
            A +VALAA  + QQ   ++           D ++E +EE   E + RR   +KD     WA QL E KDLE     D TS  A +FRE FR+PYPFF+ LV +VK++DWF T ++DA GR+  PV+ KVLACL ILARGNCF  IY +S++S      TFH+F ++FA EMY +HI+LP+    +  KVM +Y++LGF GA GSTDVTHI W  CPYNQARSYTGKEG PTV YQVTVDHT RVLAVT GFTGSTND
Sbjct:   31 AFSVALAAFNQQQQRTLVAWDLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTND 285          
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.580e-75
Identity = 130/226 (57.52%), Postives = 158/226 (69.91%), Query Frame = 2
Query:  155 LLPELALAVALAALREVQQDDFLSD--AEAEPDEEQPLEKRPRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQV 826
            LLP  ALAVAL A+ EVQ++D       E +P  + P E+  R QR++KD+ETCAWAQLLEDKDLED+TS+TA++FR DFRVPY FFLRLV +VK K+WF  A  DA GR  HPVEHKVLA LTIL R NCF SI+ +SWMS+  VQ  FHKFC+HFA +MYD+HI+L ++ +G+LD V+      G                 CPYNQARSYTGKEG PT+ YQV
Sbjct:   55 LLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFLAAATDAVGRASHPVEHKVLAWLTILGRNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVRSGWVYG-----------------CPYNQARSYTGKEGFPTIAYQV 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig775.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE3.560e-13375.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI5.710e-10866.93Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5L642_9PHAE7.510e-10767.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE3.370e-10363.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE4.740e-9359.84DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KFR8_9PHAE5.410e-8555.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL1_9PHAE2.610e-8353.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.560e-7952.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE5.900e-7855.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE1.580e-7557.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig775contigP-littoralis_Contig775:88192..91249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size890
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1e-40
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size876
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.5368814-CDS-P-littoralis_Contig775:88191..885781680791598.5368814-CDS-P-littoralis_Contig775:88191..88578Pylaiella littoralis U1_48CDSP-littoralis_Contig775 88192..88578 -
1680791598.5505178-CDS-P-littoralis_Contig775:90747..912361680791598.5505178-CDS-P-littoralis_Contig775:90747..91236Pylaiella littoralis U1_48CDSP-littoralis_Contig775 90748..91236 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.5647345-UTR-P-littoralis_Contig775:91236..912491680791598.5647345-UTR-P-littoralis_Contig775:91236..91249Pylaiella littoralis U1_48UTRP-littoralis_Contig775 91237..91249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig775.29.1prot_P-littoralis_Contig775.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig775 88192..91236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig775.29.1

>prot_P-littoralis_Contig775.29.1 ID=prot_P-littoralis_Contig775.29.1|Name=mRNA_P-littoralis_Contig775.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=292bp
MLVWLPSLLLLPLLLIAGGQRVTSSSLPARSGALYSMASAGEGGVDDLLP
ELALAVALAALREVQQDDFLSDAEAEPDEEQPLEKRPRRQRKKKDIETCA
WAQLLEDKDLEDTTSVTAEKFREDFRVPYPFFLRLVEVVKRKDWFATAQR
DAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTFHKFCK
HFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRC
PYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND
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mRNA from alignment at P-littoralis_Contig775:88192..91249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig775.29.1 ID=mRNA_P-littoralis_Contig775.29.1|Name=mRNA_P-littoralis_Contig775.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3058bp|location=Sequence derived from alignment at P-littoralis_Contig775:88192..91249- (Pylaiella littoralis U1_48)
ACAACACAGGACCATGCTGGTTTGGCTACCATCGCTACTGCTGCTGCCGC TGCTGCTTATCGCCGGCGGTCAGCGTGTTACTTCGTCGTCGTTGCCCGCC CGCAGCGGGGCCCTTTATTCCATGGCGTCAGCAGGAGAGGGCGGGGTGGA TGACCTTCTACCAGAACTTGCTCTTGCGGTGGCCCTGGCTGCTCTCCGTG AGGTCCAGCAAGATGACTTCCTGTCAGATGCTGAGGCCGAGCCCGATGAG GAGCAGCCGCTCGAGAAGCGCCCGCGAAGGCAGAGGAAGAAGAAAGACAT CGAGACGTGTGCTTGGGCGCAGCTCCTCGAGGATAAAGACCTGGAGGACA CGACGTCCGTAACGGCGGAAAAGTTTCGAGAGGACTTTCGCGTCCCCTAC CCGTTTTTCCTGCGGCTTGTCGAAGTGGTGAAGAGGAAGGACTGGTTCGC CACTGCACAGCGCGACGCATTTGGGCGGCAATGCCACCCAGTGGAGCACA AGGTGGGCTCAGGAAGTTGATCACTCGTCAACACTTGTTGCTAGTTGTGG GATCTGTACGGTTTTATAGCCGCATAAACTCTCGGTGCGTTTGAATTTGC GGAGAGGAAGGATTCAAAAATCGTATGACACCAACAACAGATGGCACGAA TAAATGGGACGAACGCACACACACATAGACACACACACACACACACATGC TACCGAGATGGTACCCCAACGTTACCGTCTGATATCTCCTTTCGTTTGGG TGACCATGGCTTTGTTCCCTTGCTTTTTATCTTCCTCCTATCGTAGCACG GTATGTGCGTGGATTGTGACCACGGGCTAGACTACGGTGGTGGTAAGCTA ATGTGAGAATCGACAACATCTCAACATGCTGAAATAAATCGTACCTACAA AACAGACAGCAGTAGCATTCCCTGGAGGCTGCAGCGGTACTGCTGTAGCT CTTTTACCTGCACAACAGCGGAAGTTCGGATGCCTGTACAGCAGCAGTAG CTCTCCCCATCGTGGTATGGCATAAACTCTACAACCTGTTCTATAAAGCA GGTAACTCTGGTCGCTGCGTGCACCAACACCCATCACCACCGCCGTACAG CATTTAGGTGCTGATGGGCGCAGCTCTTCTTCGCAAGGGTGCATGCATGT GCATGCATATATGTATACAGCAGTAAACGTTATACACAGAGTGTGAACAA ACATCTGGGTTGGAAGAGGGAAGCTGGCCATGCGGCGGCAAATACACCAG ACAGCAGACACGCTTACTGCTTCCTGCTTGTGGTGTCTTGTGATATCATA CCATACCATGTCATATCATATCATATCATGAATCATATCATTTCATATCA TATCATACAGTATCATATCATATCATATCGTATCTTATCAGACCAGATCA AATCGGGTCCGATCGGATCAGATTACAGTACAGTAGATCGGATTAGATCA GATCAGATCAAAACATCGCGTAGCATATTATATCATATCATCACATGTCA CATGACATTATAGTACATAAACGTTTGTTGGCAGGCGCAGGTAACGTGAT AAGAGCCGGTTACCCGGTGTGTTCGATCTCACAGCAGGGATCGGCAGGCA CCACTGGTCGCACGGGATACTGCTGCACAGCACATGTCTTTTGTTCTCGG CTTCTGGTACTGGGCTCTTCGCAGAAGGCTAGGAGTCTGCCTTCTTTTTG TTCTGTCGGGCAGAAAGCGTTTCGCACAAAGCAGACAGTCCCGACCACAA CACACCACAATCTCGCCGCTCCAGAGTGCGCATCAGCTTACGGAGTGCAG CAGCACATCCCCACAGCACGATCGAAATACACACAGGGGCCGCGACAAAG GCCCGCGATAGACTGGAGCGATTGGTTTGATAAGCAGAAGGGCAGAAGGG TTGTCCGGCCGTTATCCTGTCGCCAACCGAGCTGGGAACGTGTCTTCCGT GGTGCTGCTGTGTCATCAGCTGCGGTTTCTTTTCCAGTATACTAAAACAG CCGTCCACATTTTTTCCCACTTGAATGTTGTTCAGCATACGCACATCTCG AAGCCCCTCGAGGCGCACGCCTTCATCCTCTCCACTGGTTCGCGGCTCTG TCTGCTGTCTGCTGTTCCCATACGCATGTACCGGCGGGGCTGAAAGTACT CGCCGGCAAACCCCTGTCTGTGTACAGCTGTGGTGCGTTGGGATGTTGAT CGTGTATTCTCTGACTGGTACGTGATTGCTTCTCCTCCTGCTGCTGCTGC TGGATGTCGCCCATCCACCAGCATCGTCTGTCTTCTGTGTTGCTGTTGCA TATTTCTTGTTCTTGCATCACACACACAAATATATGCTGCTGCTGTATAC TGCTGTACACCACGACGATGCTTGAACCGGGTACCTCTATACGTTATGCA ACGTGGATAATTTCTATGATGTCGGGATTTGTGTTGGTGCCCCTTGTTGT GTCTTGTTTAAGTTGGGACGTGAATAAGAAAGGCGCTGAGGTACCTCTTC CACGTCGGGAAGACCGGACTCGAAACTAAAACAGTCAGATGCTCAATTCG ATGATCAACCCCACCAGGGTTAACGCGACACCCCACACGATAGCCTGACG TCTTACAACCATGTACTCCCTCCACGGACCCCCTTTTTTTTTACCTTTTG CAACTTGTGCTAATATTGCAGGTCCTGGCCTGCCTTACCATACTGGCCAG GGGAAACTGTTTCGGAAGCATCTACATGCTTTCATGGATGAGCAGCACCG TAGTGCAGAAGACTTTCCACAAATTTTGCAAGCACTTCGCGACGGAGATG TACGACGACCACATCTACCTCCCGTCGGACGGAAACGGCGAGCTTGATAA AGTCATGGGAGAGTACGAGAAGCTGGGGTTTCCGGGCGCGATGGGTTCCA CTGATGTTACCCACATCGCGTGGAGTAGATGCCCCTACAACCAAGCCCGT TCGTACACCGGCAAGGAAGGCAAGCCCACGGTCGGGTACCAGGTGACGGT CGACCACACTGGGCGCGTGTTGGCTGTTACAGAGGGATTCACCGGGTCCA CCAACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig775:88192..91249-

>mRNA_P-littoralis_Contig775.29.1 ID=mRNA_P-littoralis_Contig775.29.1|Name=mRNA_P-littoralis_Contig775.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig775:88192..91249- (Pylaiella littoralis U1_48)
ATGCTGGTTTGGCTACCATCGCTACTGCTGCTGCCGCTGCTGCTTATCGC
CGGCGGTCAGCGTGTTACTTCGTCGTCGTTGCCCGCCCGCAGCGGGGCCC
TTTATTCCATGGCGTCAGCAGGAGAGGGCGGGGTGGATGACCTTCTACCA
GAACTTGCTCTTGCGGTGGCCCTGGCTGCTCTCCGTGAGGTCCAGCAAGA
TGACTTCCTGTCAGATGCTGAGGCCGAGCCCGATGAGGAGCAGCCGCTCG
AGAAGCGCCCGCGAAGGCAGAGGAAGAAGAAAGACATCGAGACGTGTGCT
TGGGCGCAGCTCCTCGAGGATAAAGACCTGGAGGACACGACGTCCGTAAC
GGCGGAAAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCGTTTTTCCTGC
GGCTTGTCGAAGTGGTGAAGAGGAAGGACTGGTTCGCCACTGCACAGCGC
GACGCATTTGGGCGGCAATGCCACCCAGTGGAGCACAAGGTCCTGGCCTG
CCTTACCATACTGGCCAGGGGAAACTGTTTCGGAAGCATCTACATGCTTT
CATGGATGAGCAGCACCGTAGTGCAGAAGACTTTCCACAAATTTTGCAAG
CACTTCGCGACGGAGATGTACGACGACCACATCTACCTCCCGTCGGACGG
AAACGGCGAGCTTGATAAAGTCATGGGAGAGTACGAGAAGCTGGGGTTTC
CGGGCGCGATGGGTTCCACTGATGTTACCCACATCGCGTGGAGTAGATGC
CCCTACAACCAAGCCCGTTCGTACACCGGCAAGGAAGGCAAGCCCACGGT
CGGGTACCAGGTGACGGTCGACCACACTGGGCGCGTGTTGGCTGTTACAG
AGGGATTCACCGGGTCCACCAACGAC
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