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Homology
BLAST of mRNA_P-littoralis_Contig774.40.2 vs. uniprot
Match: D7FRQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ3_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.800e-52 Identity = 95/118 (80.51%), Postives = 101/118 (85.59%), Query Frame = 2
Query: 14 MSRLLNPIAAASVAMRTPARRRVVQKVLDKASRPVYEREFMMLMNSLPMSVQDSNNAAKAESLRTAQKALDAAMQKAAAHKGQDYVTFRMKQLSEVAATKKRRRRNGIGRGRFNLARV 367
MSR LNPI AAS AMRTPARRRVVQKVLD AS V EREFMMLMN+LP V+D+ AK E+LRTAQK+L A QKAAAH+GQDYVTFRMKQLS VAATKKRRRRNGIGRGRFNLARV
Sbjct: 1 MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPEDVEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATKKRRRRNGIGRGRFNLARV 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 373 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-00_003420.1 |
| Cds size | 360 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791597.221124-CDS-P-littoralis_Contig774:123322..123451 | 1680791597.221124-CDS-P-littoralis_Contig774:123322..123451 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig774 123323..123451 - |
| 1680791597.235187-CDS-P-littoralis_Contig774:124041..124203 | 1680791597.235187-CDS-P-littoralis_Contig774:124041..124203 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig774 124042..124203 - |
| 1680791597.2473192-CDS-P-littoralis_Contig774:131560..131629 | 1680791597.2473192-CDS-P-littoralis_Contig774:131560..131629 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig774 131561..131629 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791597.26163-UTR-P-littoralis_Contig774:131629..131642 | 1680791597.26163-UTR-P-littoralis_Contig774:131629..131642 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig774 131630..131642 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig774.40.2 >prot_P-littoralis_Contig774.40.2 ID=prot_P-littoralis_Contig774.40.2|Name=mRNA_P-littoralis_Contig774.40.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MSRLLNPIAAASVAMRTPARRRVVQKVLDKASRPVYEREFMMLMNSLPMS VQDSNNAAKAESLRTAQKALDAAMQKAAAHKGQDYVTFRMKQLSEVAATK KRRRRNGIGRGRFNLARVL* back to topmRNA from alignment at P-littoralis_Contig774:123323..131642- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig774.40.2 ID=mRNA_P-littoralis_Contig774.40.2|Name=mRNA_P-littoralis_Contig774.40.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8320bp|location=Sequence derived from alignment at P-littoralis_Contig774:123323..131642- (Pylaiella littoralis U1_48) AATATCGGAACAGATGTCTCGATTGCTCAATCCTATCGCGGCGGCGTCGG
TAGCGATGCGGACACCTGCTCGACGTAGAGTGGTGAGTGACGCTCCGATC
CTAGGTTCTCTCTTCTTTTCTGGTTTTCACAATCATACTACTTGTGGTAC
ACTCCACCCGCAACATCAATGCGAGGGCCTTGCCCTTGTTGTCATCTCGT
GGTTGTAGAATCAAGGAGAGCTGCAACTCTCCCACTACCGTATACGATGT
CTTTGCATAGGAACAGATACACAGCTTGCCTTGCTATTGTGTTTGCTGCT
ATTTTTTTCTGTATTGTTTTAACCCTATTGCATGAGCCTTCACCCGGGTT
TGGTTGAGCCTCAAAGTTGAGTTTTTTTTTATCCGGTCTACCACTCGAAG
TAACACGATCTGGGTTTTCTTCTCACAATGCGTGTGAAAGTGGAAAGCGA
TTAATTCGTGAGTAAACAAAAATTCGATCCTACCATCGACGAGGGAAAGG
GATTGATGTCCCCTTTCTCGCGATAAAAAGCTCAACCAAACAAGGCAAGC
ACCGCAGAGGGACGTGGAGAAAAAAAAAAAAATCGTGTGTTGACTTCCCC
CTGTGTGACCCCAGTTGGAGCGTCGACCTACCCAAAAGGTAGAGTGGCGT
CCAATTAAAGGGACGACAACACACACACACACATACCTCCGGTCGCCCCG
GTGGACTAGTGGTCCCACGTTAACCACTAGATGCAGAGGAACGGGGGTTC
GATTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAAGCGGCCATGCTGTT
AGTAAAAGCAGATTCGGGTTCGCCGACGAGGGCAGGGACCGCGGACCCTT
GCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTCGGGGTA
ACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAG
CCTGTAGTATGCAGACTAGTGTGCCAGAGAATATGGGACGACAACACAAC
ACACTCGATGCCGAAGAGGCACATCAGCACCTCTCTGCTTCACGTCGCAA
AAAAAGTAAGACACATCGACGGCAGGGGCACCAACAGAAACAGACGTCCC
GACATCATAGGACATTCTTCACATTACAGCACATAACACACAGAGAAACC
CGGTACAAGCATCGTCGTGGTGTTCAGCAGTGGTATACAGCAGCAGCATT
TTTGTGTGTGTGATAAAAGAAAAAAAGAAAAAAAGAGACTGCAACAACGT
CACAGAAGGCAGCCCATGGCACATATGTAGATGGGCTACATACAGCAGCA
GCAGCAGCAGCAGCAATCCCGTGGCAGTGAGAGAATACACGAACACCCAA
CGCAACACAGCTGATACAGATTGGTATGCCGACGTAGATTGGTATGCCGG
CGAGTACTTTCAACCCGGCCGGTGCATGCATGTGAGATAGATGTATCATA
GGAACAGCAGACAGCAGACAGCAGCAGCAGCAGCAGCGGCCGGTGCGCTA
GAGAGACCGAAGGCCTACGCCTCGAGGGGTTTAGAGATGTGCATATGTCA
AAACAACTTCAAGTAGGCAACATTGAGCATTTGAGTTGGACAGAAGAGTA
TATACCGAAAAACGACAGCAGCCGAAAACACGGCAGCACCACGGAATACA
CGTTCTCAGCTAGGTCTGCGACAGGAACACGGCCGGGCGACCCTCCTACT
TGCCAAACCAATCGATCCAGCCTATCGCGGGCCTTTGTCGCGGCCCCTGC
GTGTATTTCGATCGTGTGTTGGGGGGTTTGCTGCTGCACGTCGAAAGCTG
ATACGCACTCTGGAGCGGTGAGATTGTGGTGTGTCCTGGTCGGCACTGTC
TGTTTTTTGCGAAAGAACCTTTCTGCCAGACAAAAAAAAAAAAGCAGGCG
AAGAGCCCAGTAAAAGAAGGGCTAAAACACGTTATGTAAGGATACTATGA
TGTGTCACATATCAAAAACGGTTCGTTTTTGACATTGGACCCAGATCGGG
CATCTTATGTGATCAGAAACGGGCGTTTTTTGATAAAAACGTTTTCAATC
AACATTCATTTTTGATCCAGCACCAGCTCAGAAATGACGCTCATTTTTGA
TCTGCTCCGCGTATCAAAAGTGATTATTGAAAACATTTGTCCGACGCAAG
CTACAACACAAGCGCCCCACAGCAGCAGCACAAAACACAGGACCATGCTG
GTTTGGCTGCTATCACTACTGCTGCTGCTGCTGCTGCAGATCGCGGGCGG
TCAGTGTGTTACTTCCACGTCGTCGCCCGCCAGCAGCGTGGCCCTTCATC
CGATGGCGGCAGTAGCACGAGAGCGATTGATTGCGTTTCACCTTCAAGCA
CGCGTACACTGCTGTGCAGATAGATGCTCTGCATATGCACCATCAGCATG
ACTTGTTCTTGCCATCGCCTCTCAAAACAAGCTTGACAGGTATGGGTGTA
CTCCGAGTAGTCCAGCGGGAGGGACAACACCTTGTCTAGATTGATGTATG
GTTTGCGGGCGGTGCTGCTCTGTTCTGGGTGTGACCCAGCGCGTCGTGCT
CCATGCCGAGAGGGTGCTGCACTCGCTCCAAAATTTTGAAATGTACACCC
AAACGGCTCTTGGGATTCTACATACGAAAAATACGTTTTTGAGTTTGACA
AATTGTTTTGTATTTACGTACCATTATTACGCGTAAGATCCGATGTTGAT
ACCACCCTGTTGGGATTGTCAGTATCAAAAACGAATCAGTATTGATTTAT
TTTTTTTTGACACATGAAAAGTAGCCGAAAGCTGAGACAACTCTCACAGC
AGCAGTTTCGAAAAGGAAATGAGAGTATTTGTCGTCAACCCATCTAGTCG
GGACGACGGCAGGCACACCTTTCGGTACAAGTTGGCTGCGTCAGCCACGG
TCAGTAGGTTGATCACACAGGAGGAAATTCCACACGGGACGATTTTTGTT
GTTGGCGTGAGTGTTGACTTCATCAACGCAACAATACGGCTGTTATACGA
GTACTTGCGCGTACTTCGGACACGGGTTTCGGCGGTTCATCATACCTGAT
ACCTTGACGTTTTCGGTCACACAGGCAGTGTACATTTGTACCGGTACCCA
AAGAGGTAACCAGGTCCAAGGATGACACGAGGGGAAACCCTATAGTACCT
ACTCAATGAAGTTGCCCTGCCCAAGTACAAAAATGAAACGACCCCGCAAG
ATCATAACTACAACGCTACAAAAATACCTCTATGCGAGTACAGGTAGAAA
TTAAACACAAGTATTGTTCAAAGCCAAAACCAAAATCAAACCAAAATCAA
AAGCATCGACAGGTGCCAAATGCCGAGACCAAGCATCGACAGGTTGCAAC
TCACACCGACCCAGCGAAACGGCGGAGGCGAAACAATAAAGATGAAAGGA
AGACATGATTCGCATCGCAAGACGTTAAGAAACGCAGTTCTGCAATCAGG
ACGCACCCGTAATGGAACGGTGGGAATGGCAAGGAGAAGAATGAGAGCAA
TTGAAAGAGCAGGCAGTTAATCCGGTGCATGCCGGACTACATACTAGTTC
CATCTGTTTCCTCTTGCGTTTCTCTGCCGCCGCCGCCGTCACGTCATTCT
GAATATGTCTACGCTTGCACACCCAGATTCCTCTGCCCCCTTCTCCCTCG
TGGCCATCTCATCGGTTAGCGCTTGATTCTGCCCTGCCTTGTTTTCCCTC
TATTAGTTTTCTGCCTTCCTCGCACTCATCATTGTGTCAGGTGCTCATTA
ACCTCGCAGCCGCCTTCACTACCCCTGTATACCACGACACACCATGCTTC
TCCTTCTCGGCATTTGTCCACAAGAAAGGGTGGTGCCGGTTCCAAACGTT
CGTCGGCTGCCATTCGTCGAACCGTCCTTGTCCGTGGCCTCAAAATCTTT
GGAATCGCCCTCCAACGGTTTTAGTCAGTGTTGTATGGGACGACATCGGC
CCGGGTGGTCGCCCGCTTTGAGTTCTACCGAACATTGGCCCCTTCGCGAG
ACTCCTGTCGTGTTGTGTAGCGAGAGCTCCCGCGATCGCTAGTCGCCTCT
GGCTGGAGAATCGCTTCCTAACATGGATTGGCTCCCGGTCTTCTGGAGCG
CTTTAGCATGTGAGAGCGGTCGGTAAATGCTTTTAACGCGGTGGTATCCG
ATAAGCCGCAGCAGTCGGTGATGTGTTGCCCGCAGTAACGCGAAGCGGCC
TTGGCGTGGTGCCCAGGCCATGACATGCATAGATCAGATCCTCCATCGCC
TCCGCGTTCAGCAGTCGGACCTTTAGTCTCCGCGGGGCTGACTGCCGGTC
GAAAATTTCTCAGGAGCACTTGTTGAGGCATCCCCACACGCGGCTCAGCT
CCAGCGTTTGATCTCGTGCGTGAGCTCTCCACCCTCGCTAACAAGGCCGC
CGAAATATTGGAACTCGTTGGCCTGTGCGTGCTTGTGACCCGCTGCTTAC
ATGACCAGTTTGGTGGGAGATGATGGTGAAGGCACCCCGGGTTTTTGTGG
TTTCTGTAGCACTCGCATCGGCAGCGTCTCCGTCTCTTCTTCAGACACCG
TCCAGCCAGAGGCCGCAACACGTCCACGAAGTTCTTCAGGCGATTCCGAG
CCTGCGTCGTCAGCGCACGGGGGGGTCTCCGTCCTTCTGTCCACCTCCTC
CTCTTCTTCGCACTGGTCGCGTAGGGTATTTCCGTCCTTCCTGAACCGCT
CCAGAACAACTTCCAGTGTTGCTGGGAGATGTTGAAAAGTCGTGGTGACA
GTATACATCCTTCTTGCAGTCCATGTGTGACTTCAACCCAGTCCGAGAAC
GTCCCGTCATTCATGCGGACCCGGGCTAGCATGCCGTCGTGGAATTGGCG
GATAACTATGATCACCCCGTCCGGTACGTCAGCTTGGGCCAGTACCCCCC
GCAGCAGTTTTCGGTCGACCGAGTCGAAGGCCTTCTACATGTCGACAAAA
CACGCACATTAGTTTTCTCTCTGGCCGTCCCATTTGCTGCAGCCGGCGCA
CTACGAATGGCATGTCGACACGGCGGATCGCTGGGGCCTGAAACCGCGCT
GCTCTGCTCCTCCGGTTGTACCCCTTGGGCATCGCAGAAGTCGCTTGAGA
CGGTTGGGCACGATCTTCAAGCGTCACCTTCCCGGCAGGCACTGAGACGA
GAGAAGGTCCTCCGGAGTTTTTTACAGTCGGATCTGTCGGCCCTTCTTGT
GGAGCACTTCAGATGATTGCACATTACCGCTGCTGCGGAACCCCGCCCCG
CGTTCCACACCCGGGCGAGTTATGTCGTGGAAAGGTTCGAGAACGATGTG
TTTAGCATCTCCAGCAAGGACGTCAATAGTCGGTAGCTCTACATGCAAGG
AGGATGTCGCCCGGTGCCTTCCAATTTTGCCTCCCCCATATTGCCAGTTT
CATCTCTTTCAAGCGGTAGCACTCAGCCGAGTGGCACCTGATCTCCTGTT
GATTCTGCCGCCGGCGTTCGCCTCACCTCTTGAATTATGTCGTGCTTGAG
TTTTGAGCGATTGTGTGTTGAGCAGGCTACCACCCTTACGTTGCAGGATA
TCACCCTGGCTCCTCAGCAAAACGTCAAACGTCAAAAAGAAAAAAACATG
CGGATATCTGAAATTATTCCAAAAGAAGTTGCGCGAGAGAAGTTCTTTCC
TGGGGGCCCGGTATGTTGAAAATACTTAGGTACCCCTCCAGTTCGCAATA
TCACGCACACGCCACCCACACACGCTGCTGTAGAAGAGCCAACACTGAGT
CTTCCTGCTAAAGCAGGGGTCGAACGTACCGGATCAGGCGAAGGACATGC
GAACTCAGTGGTCATGGCAGCAGGGATAGGGCAAGCAGGGGGGTGATCCA
GTGAAAGCAGGCGGCCGCGTAGGTACTGCTGCCGCAACAACGATACCCTT
AAACTGCCCGCCTCGTTATCGTCTTCGTGGTGGTTCTCCGTCGCGACAAA
CATGGCCATCGCCTGCCGCAGCGTAGCCTGATCTATTCACGCTCCTTCTC
GCGAAAAGTGCGCCATAGCACCGAGTGATCTGAACATGTCTGATGTTGCG
CCGTCACCATGGGTTTCCCTGCAGCGCACCTCCTCTCTAGCACTCTCACC
CCTGGCTTCGGTTGGTATTTGTTTGCCAGCCCAGGGTTGACCGCCTGTCG
CAAGCCCCGGGCATACTCTCGCGCTTCCAATGATACCGGGTTGGTTTGAC
TGTGTATCAATTTGAGTGTCGACAGGGCCTCGCTTGGCACGTCGTACTGT
TGGAATATCCTTTGTTTCCGACATGTAGAAAGTCCGGAATGAACTGCTCA
TTTCACTGCAGTCAGGAGGCCTCGGGGGGGGGGGGGGGCAAGTGAGATAT
TTTGGTTGGTTGCTTCTTACAGGGTCTTACCGATAGAAATAGATCTCGCT
TTCAAATCCAGATTCGACTCTGAAGTCTTGGAGATGCACCCCAAGCCGGG
TTTTTGTGACGCAACATGTCTCAACGGAAAACTCCAAAATTAAAACCGAC
GTCGTGAAGGAGCGAGCGGGTTTTTTCGAACAACCCCTCTTTCCGATGCG
GGCGCGGCGACCGCAACCAACAGTAACTTACGCGCAGGCACGGCAGCATA
GTGCTGGTGGCGGCGAGCGGCAGCCTGCCGCGGCCTGCACAGAAGACCAG
CCGGAAACCCTGGAAACACCCGTCTGGGTTCTCCCTTGTTGCACGCGTGG
TACTTCTGGCATCGCGAAAACGGAGAAGTCGGTGACGAAGCACGACATGA
TGATACGATCATTCCGGTGGTTGTGCTGTGTGCGTGTGTCTGCCTGGCCC
AGACATAAGCTCGCTCTTCATGGTGTGGTGTGCGCGTCCTCTTGTGGGAA
GCTGTTCGTGTGTTGTGTGGGGTGTGGGTGGGTGTTGCTTGTGTGTTGGG
CAACCGCGGCTGTCCTTGCCGCGCATGCTCTGGCGGCCTTGGTTAGTGTG
TGGGCGGTGGGCGTTCGTCTTGATGTGTTGCTCCGCTTCTGACAGCAGCT
GACGGCAGCTGTCAGAGATACCTGCCGAAGACCGCGACCAAAAAATATTT
CCCGCCGCACTGAGATGTGAAAATAAAATAAAAAGGAAACAGATCTGACT
CGGGAATCGGGAACATTTTTTGTAAATTGATGGCAGGGTCCGGAAACCAT
CAGGCTGATCAACCGGGCGAGAGATCATTTAACCGAACGACGATTGAGTG
TGGGTAGGATTTACCAGACTTCCAAGTCGAATCTGGATTCGCAAGAGAGA
GTTGACTTTGTCGACAAGACGCTCTCACTCAACAAGTGACTTTCGATGCG
ACAGCAGCAGTAAAGACGTGCATTGATGTTCCTCTATTTCTTGACTTTTT
GCTTTCTTCGCCACAAGACACACTTTTTCAACGACGAAAACTACAGAAAC
ATCCGTCACATCCTTCACACACCTTTTTTTTTATCACAGGTGCAAAAAGT
ACTCGACAAGGCGAGCAGGCCGGTCTACGAACGGGAATTCATGATGCTGA
TGAATTCCCTCCCGATGAGCGTGCAGGACAGCAACAACGCGGCAAAGGCT
GAGTCGCTCCGGACGGCTCAGAAGGCCCTGGACGCGGCCATGCAGAAAGC
GGTGAGCTTGCATCATGTGTGCTAATCCAGGCGGTGTCAAAAAGATAGAG
GGATGCGGGAGAGGGCGGCGGGACTCGTGGCCGGTAATAACCGTTCCGAA
GCCGGTGAAGGCCGTTGCGTAAGCGGTAAAAACAGCCGTTTCGTAGCTGG
CTGAGCCGTTCGTGAGGCGCGCCATCATTGCCCTAACCCTAACCCTGGTG
TACCGATGATGCCAATTACGGCGAAACCGATCCGATTGCATTTTATTTGA
AGTTTCAGGTATTCATGGATCTCAACTAGCTCCGACTTACCTCGCGCGGT
GTGTTGTTGCGCGCGGCCATTTCCTCGAAACTTAACCTTCGAGGACGGGC
GTACACACGATCGATGCTTTGCTTCTTACCGTTAATCTGAATCGTGAAAC
TGTTCGTGCGAGACGAAATTGCTCTGAAAGGACCCGCTTTCACCGCCCGC
CGCTCACAGCGCCGACAGTCACAATGCAGAGCCTAGATACCCCCCCCCGC
ACTTATTCCTCTTTCCTCCGTCTTTCCCAAAACCATCGTCGGGATACCGC
TTCTTCCGTCTCGCGAATATCTCTCTCCTAAAAAAACACAGGCCGCTCAC
AAGGGGCAGGACTACGTGACTTTCAGGATGAAGCAACTCTCGGAGGTTGC
AGCAACGAAAAAGAGGCGTCGCCGAAACGGGATCGGTCGGGGACGATTCA
ACCTGGCCAGAGTACTGTAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig774:123323..131642- >mRNA_P-littoralis_Contig774.40.2 ID=mRNA_P-littoralis_Contig774.40.2|Name=mRNA_P-littoralis_Contig774.40.2|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig774:123323..131642- (Pylaiella littoralis U1_48) ATGTCTCGATTGCTCAATCCTATCGCGGCGGCGTCGGTAGCGATGCGGAC ACCTGCTCGACGTAGAGTGGTGCAAAAAGTACTCGACAAGGCGAGCAGGC CGGTCTACGAACGGGAATTCATGATGCTGATGAATTCCCTCCCGATGAGC GTGCAGGACAGCAACAACGCGGCAAAGGCTGAGTCGCTCCGGACGGCTCA GAAGGCCCTGGACGCGGCCATGCAGAAAGCGGCCGCTCACAAGGGGCAGG ACTACGTGACTTTCAGGATGAAGCAACTCTCGGAGGTTGCAGCAACGAAA AAGAGGCGTCGCCGAAACGGGATCGGTCGGGGACGATTCAACCTGGCCAG AGTACTGTAG back to top
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