mRNA_P-littoralis_Contig774.40.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig774.40.2
Unique NamemRNA_P-littoralis_Contig774.40.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig774.40.2 vs. uniprot
Match: D7FRQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ3_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.800e-52
Identity = 95/118 (80.51%), Postives = 101/118 (85.59%), Query Frame = 2
Query:   14 MSRLLNPIAAASVAMRTPARRRVVQKVLDKASRPVYEREFMMLMNSLPMSVQDSNNAAKAESLRTAQKALDAAMQKAAAHKGQDYVTFRMKQLSEVAATKKRRRRNGIGRGRFNLARV 367
            MSR LNPI AAS AMRTPARRRVVQKVLD AS  V EREFMMLMN+LP  V+D+   AK E+LRTAQK+L  A QKAAAH+GQDYVTFRMKQLS VAATKKRRRRNGIGRGRFNLARV
Sbjct:    1 MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPEDVEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATKKRRRRNGIGRGRFNLARV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig774.40.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRQ3_ECTSI1.800e-5280.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig774contigP-littoralis_Contig774:123323..131642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size373
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003420.1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.221124-CDS-P-littoralis_Contig774:123322..1234511680791597.221124-CDS-P-littoralis_Contig774:123322..123451Pylaiella littoralis U1_48CDSP-littoralis_Contig774 123323..123451 -
1680791597.235187-CDS-P-littoralis_Contig774:124041..1242031680791597.235187-CDS-P-littoralis_Contig774:124041..124203Pylaiella littoralis U1_48CDSP-littoralis_Contig774 124042..124203 -
1680791597.2473192-CDS-P-littoralis_Contig774:131560..1316291680791597.2473192-CDS-P-littoralis_Contig774:131560..131629Pylaiella littoralis U1_48CDSP-littoralis_Contig774 131561..131629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791597.26163-UTR-P-littoralis_Contig774:131629..1316421680791597.26163-UTR-P-littoralis_Contig774:131629..131642Pylaiella littoralis U1_48UTRP-littoralis_Contig774 131630..131642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig774.40.2prot_P-littoralis_Contig774.40.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig774 123323..131629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig774.40.2

>prot_P-littoralis_Contig774.40.2 ID=prot_P-littoralis_Contig774.40.2|Name=mRNA_P-littoralis_Contig774.40.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MSRLLNPIAAASVAMRTPARRRVVQKVLDKASRPVYEREFMMLMNSLPMS
VQDSNNAAKAESLRTAQKALDAAMQKAAAHKGQDYVTFRMKQLSEVAATK
KRRRRNGIGRGRFNLARVL*
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mRNA from alignment at P-littoralis_Contig774:123323..131642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig774.40.2 ID=mRNA_P-littoralis_Contig774.40.2|Name=mRNA_P-littoralis_Contig774.40.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8320bp|location=Sequence derived from alignment at P-littoralis_Contig774:123323..131642- (Pylaiella littoralis U1_48)
AATATCGGAACAGATGTCTCGATTGCTCAATCCTATCGCGGCGGCGTCGG TAGCGATGCGGACACCTGCTCGACGTAGAGTGGTGAGTGACGCTCCGATC CTAGGTTCTCTCTTCTTTTCTGGTTTTCACAATCATACTACTTGTGGTAC ACTCCACCCGCAACATCAATGCGAGGGCCTTGCCCTTGTTGTCATCTCGT GGTTGTAGAATCAAGGAGAGCTGCAACTCTCCCACTACCGTATACGATGT CTTTGCATAGGAACAGATACACAGCTTGCCTTGCTATTGTGTTTGCTGCT ATTTTTTTCTGTATTGTTTTAACCCTATTGCATGAGCCTTCACCCGGGTT TGGTTGAGCCTCAAAGTTGAGTTTTTTTTTATCCGGTCTACCACTCGAAG TAACACGATCTGGGTTTTCTTCTCACAATGCGTGTGAAAGTGGAAAGCGA TTAATTCGTGAGTAAACAAAAATTCGATCCTACCATCGACGAGGGAAAGG GATTGATGTCCCCTTTCTCGCGATAAAAAGCTCAACCAAACAAGGCAAGC ACCGCAGAGGGACGTGGAGAAAAAAAAAAAAATCGTGTGTTGACTTCCCC CTGTGTGACCCCAGTTGGAGCGTCGACCTACCCAAAAGGTAGAGTGGCGT CCAATTAAAGGGACGACAACACACACACACACATACCTCCGGTCGCCCCG GTGGACTAGTGGTCCCACGTTAACCACTAGATGCAGAGGAACGGGGGTTC GATTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAAGCGGCCATGCTGTT AGTAAAAGCAGATTCGGGTTCGCCGACGAGGGCAGGGACCGCGGACCCTT GCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTCGGGGTA ACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAG CCTGTAGTATGCAGACTAGTGTGCCAGAGAATATGGGACGACAACACAAC ACACTCGATGCCGAAGAGGCACATCAGCACCTCTCTGCTTCACGTCGCAA AAAAAGTAAGACACATCGACGGCAGGGGCACCAACAGAAACAGACGTCCC GACATCATAGGACATTCTTCACATTACAGCACATAACACACAGAGAAACC CGGTACAAGCATCGTCGTGGTGTTCAGCAGTGGTATACAGCAGCAGCATT TTTGTGTGTGTGATAAAAGAAAAAAAGAAAAAAAGAGACTGCAACAACGT CACAGAAGGCAGCCCATGGCACATATGTAGATGGGCTACATACAGCAGCA GCAGCAGCAGCAGCAATCCCGTGGCAGTGAGAGAATACACGAACACCCAA CGCAACACAGCTGATACAGATTGGTATGCCGACGTAGATTGGTATGCCGG CGAGTACTTTCAACCCGGCCGGTGCATGCATGTGAGATAGATGTATCATA GGAACAGCAGACAGCAGACAGCAGCAGCAGCAGCAGCGGCCGGTGCGCTA GAGAGACCGAAGGCCTACGCCTCGAGGGGTTTAGAGATGTGCATATGTCA AAACAACTTCAAGTAGGCAACATTGAGCATTTGAGTTGGACAGAAGAGTA TATACCGAAAAACGACAGCAGCCGAAAACACGGCAGCACCACGGAATACA CGTTCTCAGCTAGGTCTGCGACAGGAACACGGCCGGGCGACCCTCCTACT TGCCAAACCAATCGATCCAGCCTATCGCGGGCCTTTGTCGCGGCCCCTGC GTGTATTTCGATCGTGTGTTGGGGGGTTTGCTGCTGCACGTCGAAAGCTG ATACGCACTCTGGAGCGGTGAGATTGTGGTGTGTCCTGGTCGGCACTGTC TGTTTTTTGCGAAAGAACCTTTCTGCCAGACAAAAAAAAAAAAGCAGGCG AAGAGCCCAGTAAAAGAAGGGCTAAAACACGTTATGTAAGGATACTATGA TGTGTCACATATCAAAAACGGTTCGTTTTTGACATTGGACCCAGATCGGG CATCTTATGTGATCAGAAACGGGCGTTTTTTGATAAAAACGTTTTCAATC AACATTCATTTTTGATCCAGCACCAGCTCAGAAATGACGCTCATTTTTGA TCTGCTCCGCGTATCAAAAGTGATTATTGAAAACATTTGTCCGACGCAAG CTACAACACAAGCGCCCCACAGCAGCAGCACAAAACACAGGACCATGCTG GTTTGGCTGCTATCACTACTGCTGCTGCTGCTGCTGCAGATCGCGGGCGG TCAGTGTGTTACTTCCACGTCGTCGCCCGCCAGCAGCGTGGCCCTTCATC CGATGGCGGCAGTAGCACGAGAGCGATTGATTGCGTTTCACCTTCAAGCA CGCGTACACTGCTGTGCAGATAGATGCTCTGCATATGCACCATCAGCATG ACTTGTTCTTGCCATCGCCTCTCAAAACAAGCTTGACAGGTATGGGTGTA CTCCGAGTAGTCCAGCGGGAGGGACAACACCTTGTCTAGATTGATGTATG GTTTGCGGGCGGTGCTGCTCTGTTCTGGGTGTGACCCAGCGCGTCGTGCT CCATGCCGAGAGGGTGCTGCACTCGCTCCAAAATTTTGAAATGTACACCC AAACGGCTCTTGGGATTCTACATACGAAAAATACGTTTTTGAGTTTGACA AATTGTTTTGTATTTACGTACCATTATTACGCGTAAGATCCGATGTTGAT ACCACCCTGTTGGGATTGTCAGTATCAAAAACGAATCAGTATTGATTTAT TTTTTTTTGACACATGAAAAGTAGCCGAAAGCTGAGACAACTCTCACAGC AGCAGTTTCGAAAAGGAAATGAGAGTATTTGTCGTCAACCCATCTAGTCG GGACGACGGCAGGCACACCTTTCGGTACAAGTTGGCTGCGTCAGCCACGG TCAGTAGGTTGATCACACAGGAGGAAATTCCACACGGGACGATTTTTGTT GTTGGCGTGAGTGTTGACTTCATCAACGCAACAATACGGCTGTTATACGA GTACTTGCGCGTACTTCGGACACGGGTTTCGGCGGTTCATCATACCTGAT ACCTTGACGTTTTCGGTCACACAGGCAGTGTACATTTGTACCGGTACCCA AAGAGGTAACCAGGTCCAAGGATGACACGAGGGGAAACCCTATAGTACCT ACTCAATGAAGTTGCCCTGCCCAAGTACAAAAATGAAACGACCCCGCAAG ATCATAACTACAACGCTACAAAAATACCTCTATGCGAGTACAGGTAGAAA TTAAACACAAGTATTGTTCAAAGCCAAAACCAAAATCAAACCAAAATCAA AAGCATCGACAGGTGCCAAATGCCGAGACCAAGCATCGACAGGTTGCAAC TCACACCGACCCAGCGAAACGGCGGAGGCGAAACAATAAAGATGAAAGGA AGACATGATTCGCATCGCAAGACGTTAAGAAACGCAGTTCTGCAATCAGG ACGCACCCGTAATGGAACGGTGGGAATGGCAAGGAGAAGAATGAGAGCAA TTGAAAGAGCAGGCAGTTAATCCGGTGCATGCCGGACTACATACTAGTTC CATCTGTTTCCTCTTGCGTTTCTCTGCCGCCGCCGCCGTCACGTCATTCT GAATATGTCTACGCTTGCACACCCAGATTCCTCTGCCCCCTTCTCCCTCG TGGCCATCTCATCGGTTAGCGCTTGATTCTGCCCTGCCTTGTTTTCCCTC TATTAGTTTTCTGCCTTCCTCGCACTCATCATTGTGTCAGGTGCTCATTA ACCTCGCAGCCGCCTTCACTACCCCTGTATACCACGACACACCATGCTTC TCCTTCTCGGCATTTGTCCACAAGAAAGGGTGGTGCCGGTTCCAAACGTT CGTCGGCTGCCATTCGTCGAACCGTCCTTGTCCGTGGCCTCAAAATCTTT GGAATCGCCCTCCAACGGTTTTAGTCAGTGTTGTATGGGACGACATCGGC CCGGGTGGTCGCCCGCTTTGAGTTCTACCGAACATTGGCCCCTTCGCGAG ACTCCTGTCGTGTTGTGTAGCGAGAGCTCCCGCGATCGCTAGTCGCCTCT GGCTGGAGAATCGCTTCCTAACATGGATTGGCTCCCGGTCTTCTGGAGCG CTTTAGCATGTGAGAGCGGTCGGTAAATGCTTTTAACGCGGTGGTATCCG ATAAGCCGCAGCAGTCGGTGATGTGTTGCCCGCAGTAACGCGAAGCGGCC TTGGCGTGGTGCCCAGGCCATGACATGCATAGATCAGATCCTCCATCGCC TCCGCGTTCAGCAGTCGGACCTTTAGTCTCCGCGGGGCTGACTGCCGGTC GAAAATTTCTCAGGAGCACTTGTTGAGGCATCCCCACACGCGGCTCAGCT CCAGCGTTTGATCTCGTGCGTGAGCTCTCCACCCTCGCTAACAAGGCCGC CGAAATATTGGAACTCGTTGGCCTGTGCGTGCTTGTGACCCGCTGCTTAC ATGACCAGTTTGGTGGGAGATGATGGTGAAGGCACCCCGGGTTTTTGTGG TTTCTGTAGCACTCGCATCGGCAGCGTCTCCGTCTCTTCTTCAGACACCG TCCAGCCAGAGGCCGCAACACGTCCACGAAGTTCTTCAGGCGATTCCGAG CCTGCGTCGTCAGCGCACGGGGGGGTCTCCGTCCTTCTGTCCACCTCCTC CTCTTCTTCGCACTGGTCGCGTAGGGTATTTCCGTCCTTCCTGAACCGCT CCAGAACAACTTCCAGTGTTGCTGGGAGATGTTGAAAAGTCGTGGTGACA GTATACATCCTTCTTGCAGTCCATGTGTGACTTCAACCCAGTCCGAGAAC GTCCCGTCATTCATGCGGACCCGGGCTAGCATGCCGTCGTGGAATTGGCG GATAACTATGATCACCCCGTCCGGTACGTCAGCTTGGGCCAGTACCCCCC GCAGCAGTTTTCGGTCGACCGAGTCGAAGGCCTTCTACATGTCGACAAAA CACGCACATTAGTTTTCTCTCTGGCCGTCCCATTTGCTGCAGCCGGCGCA CTACGAATGGCATGTCGACACGGCGGATCGCTGGGGCCTGAAACCGCGCT GCTCTGCTCCTCCGGTTGTACCCCTTGGGCATCGCAGAAGTCGCTTGAGA CGGTTGGGCACGATCTTCAAGCGTCACCTTCCCGGCAGGCACTGAGACGA GAGAAGGTCCTCCGGAGTTTTTTACAGTCGGATCTGTCGGCCCTTCTTGT GGAGCACTTCAGATGATTGCACATTACCGCTGCTGCGGAACCCCGCCCCG CGTTCCACACCCGGGCGAGTTATGTCGTGGAAAGGTTCGAGAACGATGTG TTTAGCATCTCCAGCAAGGACGTCAATAGTCGGTAGCTCTACATGCAAGG AGGATGTCGCCCGGTGCCTTCCAATTTTGCCTCCCCCATATTGCCAGTTT CATCTCTTTCAAGCGGTAGCACTCAGCCGAGTGGCACCTGATCTCCTGTT GATTCTGCCGCCGGCGTTCGCCTCACCTCTTGAATTATGTCGTGCTTGAG TTTTGAGCGATTGTGTGTTGAGCAGGCTACCACCCTTACGTTGCAGGATA TCACCCTGGCTCCTCAGCAAAACGTCAAACGTCAAAAAGAAAAAAACATG CGGATATCTGAAATTATTCCAAAAGAAGTTGCGCGAGAGAAGTTCTTTCC TGGGGGCCCGGTATGTTGAAAATACTTAGGTACCCCTCCAGTTCGCAATA TCACGCACACGCCACCCACACACGCTGCTGTAGAAGAGCCAACACTGAGT CTTCCTGCTAAAGCAGGGGTCGAACGTACCGGATCAGGCGAAGGACATGC GAACTCAGTGGTCATGGCAGCAGGGATAGGGCAAGCAGGGGGGTGATCCA GTGAAAGCAGGCGGCCGCGTAGGTACTGCTGCCGCAACAACGATACCCTT AAACTGCCCGCCTCGTTATCGTCTTCGTGGTGGTTCTCCGTCGCGACAAA CATGGCCATCGCCTGCCGCAGCGTAGCCTGATCTATTCACGCTCCTTCTC GCGAAAAGTGCGCCATAGCACCGAGTGATCTGAACATGTCTGATGTTGCG CCGTCACCATGGGTTTCCCTGCAGCGCACCTCCTCTCTAGCACTCTCACC CCTGGCTTCGGTTGGTATTTGTTTGCCAGCCCAGGGTTGACCGCCTGTCG CAAGCCCCGGGCATACTCTCGCGCTTCCAATGATACCGGGTTGGTTTGAC TGTGTATCAATTTGAGTGTCGACAGGGCCTCGCTTGGCACGTCGTACTGT TGGAATATCCTTTGTTTCCGACATGTAGAAAGTCCGGAATGAACTGCTCA TTTCACTGCAGTCAGGAGGCCTCGGGGGGGGGGGGGGGCAAGTGAGATAT TTTGGTTGGTTGCTTCTTACAGGGTCTTACCGATAGAAATAGATCTCGCT TTCAAATCCAGATTCGACTCTGAAGTCTTGGAGATGCACCCCAAGCCGGG TTTTTGTGACGCAACATGTCTCAACGGAAAACTCCAAAATTAAAACCGAC GTCGTGAAGGAGCGAGCGGGTTTTTTCGAACAACCCCTCTTTCCGATGCG GGCGCGGCGACCGCAACCAACAGTAACTTACGCGCAGGCACGGCAGCATA GTGCTGGTGGCGGCGAGCGGCAGCCTGCCGCGGCCTGCACAGAAGACCAG CCGGAAACCCTGGAAACACCCGTCTGGGTTCTCCCTTGTTGCACGCGTGG TACTTCTGGCATCGCGAAAACGGAGAAGTCGGTGACGAAGCACGACATGA TGATACGATCATTCCGGTGGTTGTGCTGTGTGCGTGTGTCTGCCTGGCCC AGACATAAGCTCGCTCTTCATGGTGTGGTGTGCGCGTCCTCTTGTGGGAA GCTGTTCGTGTGTTGTGTGGGGTGTGGGTGGGTGTTGCTTGTGTGTTGGG CAACCGCGGCTGTCCTTGCCGCGCATGCTCTGGCGGCCTTGGTTAGTGTG TGGGCGGTGGGCGTTCGTCTTGATGTGTTGCTCCGCTTCTGACAGCAGCT GACGGCAGCTGTCAGAGATACCTGCCGAAGACCGCGACCAAAAAATATTT CCCGCCGCACTGAGATGTGAAAATAAAATAAAAAGGAAACAGATCTGACT CGGGAATCGGGAACATTTTTTGTAAATTGATGGCAGGGTCCGGAAACCAT CAGGCTGATCAACCGGGCGAGAGATCATTTAACCGAACGACGATTGAGTG TGGGTAGGATTTACCAGACTTCCAAGTCGAATCTGGATTCGCAAGAGAGA GTTGACTTTGTCGACAAGACGCTCTCACTCAACAAGTGACTTTCGATGCG ACAGCAGCAGTAAAGACGTGCATTGATGTTCCTCTATTTCTTGACTTTTT GCTTTCTTCGCCACAAGACACACTTTTTCAACGACGAAAACTACAGAAAC ATCCGTCACATCCTTCACACACCTTTTTTTTTATCACAGGTGCAAAAAGT ACTCGACAAGGCGAGCAGGCCGGTCTACGAACGGGAATTCATGATGCTGA TGAATTCCCTCCCGATGAGCGTGCAGGACAGCAACAACGCGGCAAAGGCT GAGTCGCTCCGGACGGCTCAGAAGGCCCTGGACGCGGCCATGCAGAAAGC GGTGAGCTTGCATCATGTGTGCTAATCCAGGCGGTGTCAAAAAGATAGAG GGATGCGGGAGAGGGCGGCGGGACTCGTGGCCGGTAATAACCGTTCCGAA GCCGGTGAAGGCCGTTGCGTAAGCGGTAAAAACAGCCGTTTCGTAGCTGG CTGAGCCGTTCGTGAGGCGCGCCATCATTGCCCTAACCCTAACCCTGGTG TACCGATGATGCCAATTACGGCGAAACCGATCCGATTGCATTTTATTTGA AGTTTCAGGTATTCATGGATCTCAACTAGCTCCGACTTACCTCGCGCGGT GTGTTGTTGCGCGCGGCCATTTCCTCGAAACTTAACCTTCGAGGACGGGC GTACACACGATCGATGCTTTGCTTCTTACCGTTAATCTGAATCGTGAAAC TGTTCGTGCGAGACGAAATTGCTCTGAAAGGACCCGCTTTCACCGCCCGC CGCTCACAGCGCCGACAGTCACAATGCAGAGCCTAGATACCCCCCCCCGC ACTTATTCCTCTTTCCTCCGTCTTTCCCAAAACCATCGTCGGGATACCGC TTCTTCCGTCTCGCGAATATCTCTCTCCTAAAAAAACACAGGCCGCTCAC AAGGGGCAGGACTACGTGACTTTCAGGATGAAGCAACTCTCGGAGGTTGC AGCAACGAAAAAGAGGCGTCGCCGAAACGGGATCGGTCGGGGACGATTCA ACCTGGCCAGAGTACTGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig774:123323..131642-

>mRNA_P-littoralis_Contig774.40.2 ID=mRNA_P-littoralis_Contig774.40.2|Name=mRNA_P-littoralis_Contig774.40.2|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig774:123323..131642- (Pylaiella littoralis U1_48)
ATGTCTCGATTGCTCAATCCTATCGCGGCGGCGTCGGTAGCGATGCGGAC
ACCTGCTCGACGTAGAGTGGTGCAAAAAGTACTCGACAAGGCGAGCAGGC
CGGTCTACGAACGGGAATTCATGATGCTGATGAATTCCCTCCCGATGAGC
GTGCAGGACAGCAACAACGCGGCAAAGGCTGAGTCGCTCCGGACGGCTCA
GAAGGCCCTGGACGCGGCCATGCAGAAAGCGGCCGCTCACAAGGGGCAGG
ACTACGTGACTTTCAGGATGAAGCAACTCTCGGAGGTTGCAGCAACGAAA
AAGAGGCGTCGCCGAAACGGGATCGGTCGGGGACGATTCAACCTGGCCAG
AGTACTGTAG
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