mRNA_P-littoralis_Contig1195.1.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 208 bits (530), Expect = 4.290e-61 Identity = 108/154 (70.13%), Postives = 119/154 (77.27%), Query Frame = 1
Query: 109 LAWALRWVR--SGPAVNTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCVQVNRATYKDKLINSVFPDIRAKFPAAHTVFAQQDNVPGH 564
L+WALRWVR +G A +WFYICKQGQRYY YE E PIRKVQHKSHV KVMFLAAVARPRYDSSR+RQ DGKIGIYPFT+Q AQRNGRN AAGTMVTH V+VNR YK KL N+VFPDIRAKFP++ +FAQQ+N PGH
Sbjct: 34 LSWALRWVRPSAGDAHKFHHFFDFLHLD-EKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPIIFAQQENAPGH 185
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000E6FD0CA (uncharacterized protein LOC113359240 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FD0CA) HSP 1 Score: 152 bits (383), Expect = 8.190e-42 Identity = 85/193 (44.04%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 4 DITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT---VFAQQDNVPGH 564
+++KST+ +K+ +R S+ LKP LTD+ K ARL ++L + N S ++ +WFY+ K+ Q+YYL +ED P+R + K +TKVMFLA VARPRYDS+ N + GKIGI+ FT Q PAQRN +NR AGTM T + V + LIN VFP IR+K+P + +F QQDN H
Sbjct: 48 NMSKSTIHKRIKEGAIRPHSKTLKPALTDDNKKARLLFSLSMLEDYCFANKPIFKSMYNYVHIDEKWFYMTKESQKYYLLPKEDEPLRSCKSKRFITKVMFLAVVARPRYDSANNEEFSGKIGIFSFTFQEPAQRNSKNRTAGTMETKAILSVTKDVICLCLINKVFPAIRSKWPRSSNMEPIFIQQDNAKPH 240
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6P6UZX5_COFAR (uncharacterized protein LOC113715904 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6UZX5_COFAR) HSP 1 Score: 147 bits (372), Expect = 5.330e-41 Identity = 79/194 (40.72%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHTV---FAQQDNVPGH 564
+ + KSTL +K+ +++ S LKP+LTD+ K RL + L ++ + + + +WFY+ K+ ++YYL+ EE+ P+R + K + KVMFLAAVARPR+D SRN+ DGKIGI+PF + PA+RN +NR AGT+ T + V + Y+ LI++V P IRAK+P ++ + F QQDN H
Sbjct: 1 MKVAKSTLHRRIKEGVIKAHSNALKPHLTDDNKLVRLKFCLSMLQQESLNDAPVFENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSNVISPIFIQQDNAKPH 194
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3) HSP 1 Score: 150 bits (378), Expect = 4.940e-40 Identity = 86/194 (44.33%), Postives = 114/194 (58.76%), Query Frame = 1
Query: 1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPA---VNTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT--VFAQQDNVPGH 564
L+++KSTL +K+ LR + +KP LT E + ARL + L + + T + +WFY+ K +RYYL +D P+R + K +TK+MFLAAVARPRYDSS N GKIGIYPFT PA+R+ +NR AGTM T + VN+ + LI V PDIRAK+P HT +F QQDN H
Sbjct: 110 LNVSKSTLHRRIKEGVLRPHTNVIKPTLTHENRRARLEYCLSKITLSSLFSPIPTFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPRGHTGPIFIQQDNAKPH 303
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.100e-40 Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1
Query: 295 MFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQR----NGRNRAAGTMVTHCVQVNRATYKDKLINSVFPDIRAKFPAAHTVFAQQDNVPGH 564
MFLAAVARPR+DSSRNR DGKIGIYPFT+Q AQR N RNRAAGT+VT V+VNR TYK+KLIN+V PDIRAKFPA TVFAQQD+ PGH
Sbjct: 1 MFLAAVARPRFDSSRNRHFDGKIGIYPFTVQRAAQRAAQRNSRNRAAGTIVTRSVEVNRVTYKEKLINNVLPDIRAKFPAVSTVFAQQDSAPGH 94
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6P6X993_COFAR (uncharacterized protein LOC113741020 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6X993_COFAR) HSP 1 Score: 147 bits (370), Expect = 8.130e-40 Identity = 79/194 (40.72%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHTV---FAQQDNVPGH 564
+ + KSTL +K+ +++ S LKP+LTD+ K RL + L ++ + + + +WFY+ K+ ++YYL+ EE+ P+R + K + KVMFLAAVARPR+D SRN+ DGKIGI+PF + PA+RN +NR AGT+ T + V + Y+ LI++V P IRAK+P + + F QQDN H
Sbjct: 1 MKVAKSTLHRRIKEGVIKAHSNALKPHLTDDNKLVRLKFCLSMLQQESLNDAPVFENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPH 194
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6P6VBP7_COFAR (uncharacterized protein LOC113715216 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VBP7_COFAR) HSP 1 Score: 147 bits (370), Expect = 1.190e-39 Identity = 79/194 (40.72%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHTV---FAQQDNVPGH 564
+ + KSTL +K+ +++ S LKP+LTD+ K RL + L ++ + + + +WFY+ K+ ++YYL+ EE+ P+R + K + KVMFLAAVARPR+D SRN+ DGKIGI+PF + PA+RN +NR AGT+ T + V + Y+ LI++V P IRAK+P + + F QQDN H
Sbjct: 18 MKVAKSTLHRRIKEGVIKAHSNALKPHLTDDNKLVRLKFCLSMLQQESLNDAPIFENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPH 211
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3) HSP 1 Score: 148 bits (373), Expect = 2.610e-39 Identity = 85/193 (44.04%), Postives = 114/193 (59.07%), Query Frame = 1
Query: 1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVN--TSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT--VFAQQDNVPGH 564
L+++KST+ +K+ LR + +KP LT E K ARL + L + + N T + +WFY+ K +RYYL ED P+R Q K +TKVMFLAAVARPR+D+S N GKIGIYPFT PA+R+ +NR AGT+ T + V + + LI V PDIRAK+P +H +F QQDN H
Sbjct: 110 LNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRSLSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPRSHVGPIFIQQDNAKPH 302
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6G0X5Y7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5Y7_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.940e-39 Identity = 82/190 (43.16%), Postives = 118/190 (62.11%), Query Frame = 1
Query: 7 ITKSTLWDNLK-KLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCVQVNRATYKDKLINSVFPDIRAKFPAA---HTVFAQQDNVPGH 564
+ K+TL +++ + L+ + LKP+LT++ K +R+ +AL +V + ++ T +WFY+ K +YY+Y++ED P R ++ K H+TKVMFLAAVARPRYD R DGK+GI+PF + PA R+ NR GT+VTH QVN A+ + L +V P I+AK PAA TVF QQDN H
Sbjct: 122 VPKTTLVRHIQNEARLKKRTSNLKPHLTEDNKLSRMNFALSFVGQNHSFDSMYDTVHVD---EKWFYLTKVNGKYYVYDDEDLPTRHIRSKRHMTKVMFLAAVARPRYDYKRREMFDGKLGIWPFVHRVPALRSSVNRPRGTIVTHPKQVNAASNLEMLQQNVVPAIKAKMPAAGRRRTVFIQQDNAGPH 308
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000CD8BE7B (uncharacterized protein LOC111908693 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8BE7B) HSP 1 Score: 147 bits (370), Expect = 4.250e-39 Identity = 87/194 (44.85%), Postives = 114/194 (58.76%), Query Frame = 1
Query: 1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSST---TSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT--VFAQQDNVPGH 564
L+++KST+ +K+ LR + +KP LT E K ARL + L + + T + +WFY+ K +RYYL ED P+R + K +TKVMFLAAVARPR+DSS N GKIGIYPFT PA+R+ +NR AGT+ T + VN+ K LI V DIRAK+P HT +F QQDNV H
Sbjct: 110 LNVSKSTMHRWIKEGVLRPHTNAIKPTLTHENKRARLEFCLSKITLSSLFSPLPTFYDMFNVVHIDEKWFYMSKPSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDSSGNEVFSGKIGIYPFTTLVPAKRSSKNRVAGTLETKPILSVNKEITKSWLIEKVLSDIRAKWPRGHTGPIFIQQDNVKPH 303 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1195.1.1 >prot_P-littoralis_Contig1195.1.1 ID=prot_P-littoralis_Contig1195.1.1|Name=mRNA_P-littoralis_Contig1195.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVback to top mRNA from alignment at P-littoralis_Contig1195:2172..2735- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1195.1.1 ID=mRNA_P-littoralis_Contig1195.1.1|Name=mRNA_P-littoralis_Contig1195.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1195:2172..2735- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1195:2172..2735- >mRNA_P-littoralis_Contig1195.1.1 ID=mRNA_P-littoralis_Contig1195.1.1|Name=mRNA_P-littoralis_Contig1195.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1195:2172..2735- (Pylaiella littoralis U1_48)back to top |