mRNA_P-littoralis_Contig1195.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1195.1.1
Unique NamemRNA_P-littoralis_Contig1195.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 4.290e-61
Identity = 108/154 (70.13%), Postives = 119/154 (77.27%), Query Frame = 1
Query:  109 LAWALRWVR--SGPAVNTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCVQVNRATYKDKLINSVFPDIRAKFPAAHTVFAQQDNVPGH 564
            L+WALRWVR  +G A               +WFYICKQGQRYY YE E  PIRKVQHKSHV KVMFLAAVARPRYDSSR+RQ DGKIGIYPFT+Q  AQRNGRN AAGTMVTH V+VNR  YK KL N+VFPDIRAKFP++  +FAQQ+N PGH
Sbjct:   34 LSWALRWVRPSAGDAHKFHHFFDFLHLD-EKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPIIFAQQENAPGH 185          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000E6FD0CA (uncharacterized protein LOC113359240 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FD0CA)

HSP 1 Score: 152 bits (383), Expect = 8.190e-42
Identity = 85/193 (44.04%), Postives = 117/193 (60.62%), Query Frame = 1
Query:    4 DITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT---VFAQQDNVPGH 564
            +++KST+   +K+  +R  S+ LKP LTD+ K ARL ++L  +      N     S  ++     +WFY+ K+ Q+YYL  +ED P+R  + K  +TKVMFLA VARPRYDS+ N +  GKIGI+ FT Q PAQRN +NR AGTM T  +  V +      LIN VFP IR+K+P +     +F QQDN   H
Sbjct:   48 NMSKSTIHKRIKEGAIRPHSKTLKPALTDDNKKARLLFSLSMLEDYCFANKPIFKSMYNYVHIDEKWFYMTKESQKYYLLPKEDEPLRSCKSKRFITKVMFLAVVARPRYDSANNEEFSGKIGIFSFTFQEPAQRNSKNRTAGTMETKAILSVTKDVICLCLINKVFPAIRSKWPRSSNMEPIFIQQDNAKPH 240          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6P6UZX5_COFAR (uncharacterized protein LOC113715904 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6UZX5_COFAR)

HSP 1 Score: 147 bits (372), Expect = 5.330e-41
Identity = 79/194 (40.72%), Postives = 120/194 (61.86%), Query Frame = 1
Query:    1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHTV---FAQQDNVPGH 564
            + + KSTL   +K+  +++ S  LKP+LTD+ K  RL + L  ++     +     +  +      +WFY+ K+ ++YYL+ EE+ P+R  + K  + KVMFLAAVARPR+D SRN+  DGKIGI+PF  + PA+RN +NR AGT+ T  +  V +  Y+  LI++V P IRAK+P ++ +   F QQDN   H
Sbjct:    1 MKVAKSTLHRRIKEGVIKAHSNALKPHLTDDNKLVRLKFCLSMLQQESLNDAPVFENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSNVISPIFIQQDNAKPH 194          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3)

HSP 1 Score: 150 bits (378), Expect = 4.940e-40
Identity = 86/194 (44.33%), Postives = 114/194 (58.76%), Query Frame = 1
Query:    1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPA---VNTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT--VFAQQDNVPGH 564
            L+++KSTL   +K+  LR  +  +KP LT E + ARL + L  +        + T     +      +WFY+ K  +RYYL   +D P+R  + K  +TK+MFLAAVARPRYDSS N    GKIGIYPFT   PA+R+ +NR AGTM T  +  VN+   +  LI  V PDIRAK+P  HT  +F QQDN   H
Sbjct:  110 LNVSKSTLHRRIKEGVLRPHTNVIKPTLTHENRRARLEYCLSKITLSSLFSPIPTFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPRGHTGPIFIQQDNAKPH 303          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.100e-40
Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  295 MFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQR----NGRNRAAGTMVTHCVQVNRATYKDKLINSVFPDIRAKFPAAHTVFAQQDNVPGH 564
            MFLAAVARPR+DSSRNR  DGKIGIYPFT+Q  AQR    N RNRAAGT+VT  V+VNR TYK+KLIN+V PDIRAKFPA  TVFAQQD+ PGH
Sbjct:    1 MFLAAVARPRFDSSRNRHFDGKIGIYPFTVQRAAQRAAQRNSRNRAAGTIVTRSVEVNRVTYKEKLINNVLPDIRAKFPAVSTVFAQQDSAPGH 94          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6P6X993_COFAR (uncharacterized protein LOC113741020 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6X993_COFAR)

HSP 1 Score: 147 bits (370), Expect = 8.130e-40
Identity = 79/194 (40.72%), Postives = 119/194 (61.34%), Query Frame = 1
Query:    1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHTV---FAQQDNVPGH 564
            + + KSTL   +K+  +++ S  LKP+LTD+ K  RL + L  ++     +     +  +      +WFY+ K+ ++YYL+ EE+ P+R  + K  + KVMFLAAVARPR+D SRN+  DGKIGI+PF  + PA+RN +NR AGT+ T  +  V +  Y+  LI++V P IRAK+P +  +   F QQDN   H
Sbjct:    1 MKVAKSTLHRRIKEGVIKAHSNALKPHLTDDNKLVRLKFCLSMLQQESLNDAPVFENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPH 194          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6P6VBP7_COFAR (uncharacterized protein LOC113715216 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VBP7_COFAR)

HSP 1 Score: 147 bits (370), Expect = 1.190e-39
Identity = 79/194 (40.72%), Postives = 119/194 (61.34%), Query Frame = 1
Query:    1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWT--RWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHTV---FAQQDNVPGH 564
            + + KSTL   +K+  +++ S  LKP+LTD+ K  RL + L  ++     +     +  +      +WFY+ K+ ++YYL+ EE+ P+R  + K  + KVMFLAAVARPR+D SRN+  DGKIGI+PF  + PA+RN +NR AGT+ T  +  V +  Y+  LI++V P IRAK+P +  +   F QQDN   H
Sbjct:   18 MKVAKSTLHRRIKEGVIKAHSNALKPHLTDDNKLVRLKFCLSMLQQESLNDAPIFENMFNMVHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPH 211          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3)

HSP 1 Score: 148 bits (373), Expect = 2.610e-39
Identity = 85/193 (44.04%), Postives = 114/193 (59.07%), Query Frame = 1
Query:    1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVN--TSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT--VFAQQDNVPGH 564
            L+++KST+   +K+  LR  +  +KP LT E K ARL + L  +    + N  T     +      +WFY+ K  +RYYL   ED P+R  Q K  +TKVMFLAAVARPR+D+S N    GKIGIYPFT   PA+R+ +NR AGT+ T  +  V +   +  LI  V PDIRAK+P +H   +F QQDN   H
Sbjct:  110 LNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRSLSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPRSHVGPIFIQQDNAKPH 302          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: A0A6G0X5Y7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5Y7_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.940e-39
Identity = 82/190 (43.16%), Postives = 118/190 (62.11%), Query Frame = 1
Query:    7 ITKSTLWDNLK-KLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCVQVNRATYKDKLINSVFPDIRAKFPAA---HTVFAQQDNVPGH 564
            + K+TL  +++ +  L+  +  LKP+LT++ K +R+ +AL +V    + ++   T        +WFY+ K   +YY+Y++ED P R ++ K H+TKVMFLAAVARPRYD  R    DGK+GI+PF  + PA R+  NR  GT+VTH  QVN A+  + L  +V P I+AK PAA    TVF QQDN   H
Sbjct:  122 VPKTTLVRHIQNEARLKKRTSNLKPHLTEDNKLSRMNFALSFVGQNHSFDSMYDTVHVD---EKWFYLTKVNGKYYVYDDEDLPTRHIRSKRHMTKVMFLAAVARPRYDYKRREMFDGKLGIWPFVHRVPALRSSVNRPRGTIVTHPKQVNAASNLEMLQQNVVPAIKAKMPAAGRRRTVFIQQDNAGPH 308          
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Match: UPI000CD8BE7B (uncharacterized protein LOC111908693 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8BE7B)

HSP 1 Score: 147 bits (370), Expect = 4.250e-39
Identity = 87/194 (44.85%), Postives = 114/194 (58.76%), Query Frame = 1
Query:    1 LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAVNTSST---TSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMFLAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCV-QVNRATYKDKLINSVFPDIRAKFPAAHT--VFAQQDNVPGH 564
            L+++KST+   +K+  LR  +  +KP LT E K ARL + L  +      +   T     +      +WFY+ K  +RYYL   ED P+R  + K  +TKVMFLAAVARPR+DSS N    GKIGIYPFT   PA+R+ +NR AGT+ T  +  VN+   K  LI  V  DIRAK+P  HT  +F QQDNV  H
Sbjct:  110 LNVSKSTMHRWIKEGVLRPHTNAIKPTLTHENKRARLEFCLSKITLSSLFSPLPTFYDMFNVVHIDEKWFYMSKPSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDSSGNEVFSGKIGIYPFTTLVPAKRSSKNRVAGTLETKPILSVNKEITKSWLIEKVLSDIRAKWPRGHTGPIFIQQDNVKPH 303          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1195.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWV2_9PHAE4.290e-6170.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000E6FD0CA8.190e-4244.04uncharacterized protein LOC113359240 n=2 Tax=Papav... [more]
A0A6P6UZX5_COFAR5.330e-4140.72uncharacterized protein LOC113715904 n=1 Tax=Coffe... [more]
UPI000CD9DCB34.940e-4044.33uncharacterized protein LOC111916103 n=1 Tax=Lactu... [more]
A0A6H5JRZ6_9PHAE5.100e-4075.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P6X993_COFAR8.130e-4040.72uncharacterized protein LOC113741020 n=2 Tax=Coffe... [more]
A0A6P6VBP7_COFAR1.190e-3940.72uncharacterized protein LOC113715216 n=4 Tax=Coffe... [more]
UPI000CD873B32.610e-3944.04uncharacterized protein LOC111883545 n=1 Tax=Lactu... [more]
A0A6G0X5Y7_9STRA2.940e-3943.16Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
UPI000CD8BE7B4.250e-3944.85uncharacterized protein LOC111908693 n=1 Tax=Lactu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1195contigP-littoralis_Contig1195:2172..2735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008870373.1
Model size564
Max annot lvl157072.XP_008870373.1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.78e-33
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.0315988-CDS-P-littoralis_Contig1195:2171..27351680789503.0315988-CDS-P-littoralis_Contig1195:2171..2735Pylaiella littoralis U1_48CDSP-littoralis_Contig1195 2172..2735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1195.1.1prot_P-littoralis_Contig1195.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1195 2172..2735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1195.1.1

>prot_P-littoralis_Contig1195.1.1 ID=prot_P-littoralis_Contig1195.1.1|Name=mRNA_P-littoralis_Contig1195.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
LDITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPAV
NTSSTTSSTSFTWTRWFYICKQGQRYYLYEEEDAPIRKVQHKSHVTKVMF
LAAVARPRYDSSRNRQLDGKIGIYPFTMQCPAQRNGRNRAAGTMVTHCVQ
VNRATYKDKLINSVFPDIRAKFPAAHTVFAQQDNVPGH
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mRNA from alignment at P-littoralis_Contig1195:2172..2735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1195.1.1 ID=mRNA_P-littoralis_Contig1195.1.1|Name=mRNA_P-littoralis_Contig1195.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1195:2172..2735- (Pylaiella littoralis U1_48)
TTGGACATTACGAAGTCAACTCTGTGGGATAACCTCAAGAAGCTAGGCCT ACGCTCGTGCTCGAGGTTCCTGAAGCCGTATCTTACTGACGAGGGTAAGG CTGCCAGACTGGCGTGGGCGTTGAGATGGGTGAGGAGCGGCCCGGCGGTG AACACAAGTTCCACCACTTCTTCGACTTCGTTCACTTGGACGAGATGGTT CTACATCTGCAAGCAGGGTCAGCGGTACTACCTCTACGAGGAAGAGGACG CTCCCATTCGGAAGGTCCAGCACAAGAGCCACGTGACCAAGGTCATGTTC CTCGCAGCAGTAGCACGGCCGCGCTACGACTCCAGCCGCAACCGCCAGCT CGACGGCAAAATCGGCATCTACCCCTTCACGATGCAGTGCCCTGCTCAGC GCAACGGCAGGAACAGGGCGGCGGGGACGATGGTGACTCACTGCGTGCAG GTCAACCGCGCAACGTACAAGGACAAGCTGATTAACAGCGTCTTCCCAGA CATCAGGGCGAAGTTCCCGGCAGCACACACCGTCTTCGCGCAGCAGGACA ACGTTCCGGGGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1195:2172..2735-

>mRNA_P-littoralis_Contig1195.1.1 ID=mRNA_P-littoralis_Contig1195.1.1|Name=mRNA_P-littoralis_Contig1195.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1195:2172..2735- (Pylaiella littoralis U1_48)
TTGGACATTACGAAGTCAACTCTGTGGGATAACCTCAAGAAGCTAGGCCT
ACGCTCGTGCTCGAGGTTCCTGAAGCCGTATCTTACTGACGAGGGTAAGG
CTGCCAGACTGGCGTGGGCGTTGAGATGGGTGAGGAGCGGCCCGGCGGTG
AACACAAGTTCCACCACTTCTTCGACTTCGTTCACTTGGACGAGATGGTT
CTACATCTGCAAGCAGGGTCAGCGGTACTACCTCTACGAGGAAGAGGACG
CTCCCATTCGGAAGGTCCAGCACAAGAGCCACGTGACCAAGGTCATGTTC
CTCGCAGCAGTAGCACGGCCGCGCTACGACTCCAGCCGCAACCGCCAGCT
CGACGGCAAAATCGGCATCTACCCCTTCACGATGCAGTGCCCTGCTCAGC
GCAACGGCAGGAACAGGGCGGCGGGGACGATGGTGACTCACTGCGTGCAG
GTCAACCGCGCAACGTACAAGGACAAGCTGATTAACAGCGTCTTCCCAGA
CATCAGGGCGAAGTTCCCGGCAGCACACACCGTCTTCGCGCAGCAGGACA
ACGTTCCGGGGCAC
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