mRNA_P-littoralis_Contig77.62.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: D7G6Z9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z9_ECTSI) HSP 1 Score: 282 bits (721), Expect = 5.220e-93 Identity = 157/226 (69.47%), Postives = 171/226 (75.66%), Query Frame = 1
Query: 1 FILPMNPALSILSDLPTGVLTHHERAASSADGAIGPF---NDEAVDDFSILKYEDPVLARPGATFDMTKGHDSLPQYVSLYASNERQPVGAGLRLAGAGVAA-GIVRHK-RRPHGDGDE-NIILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIYRCV 660
FI PM P S L DLP G LT A SA+ A GP DE DDFSILKYEDPVLARP FDM GHDSLPQY+SLYAS+ER+P A RLAG G AA G R+ RRP G GD+ +LKAILPNKEY D AG+WVQ VS VRSR ELE VQ+KV+ARL +LQ RPGAVCAVRE +FSELYDEVIREITLQSPERGLLLLRLRDE RMNLDT+AEIYRC+
Sbjct: 15 FIFPMIPEPSALGDLPLGALTE----AVSAESAAGPTCSSADEVDDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAGVGAAAPGSTRNTTRRPRGGGDDITAVLKAILPNKEYADAAGEWVQTVSGTVRSRGELEKVQNKVEARLATLQARPGAVCAVRESVFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCL 236
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A024UXY1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXY1_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.570e-23 Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
ILKA+LP++E+ DE GKW Q VS SRAE+ +Q + + L+ Q + +CA RER+ ++L+DE+IR++TL PERGLLL+R+RDE+RM + + +Y
Sbjct: 72 ILKAMLPSREWKDENGKWQQNVSMEPSSRAEVLELQETLASNLVKEQAKQVGICANRERLHAQLFDEIIRQVTLACPERGLLLMRVRDEIRMTIAVYQALY 172
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A024UX82_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UX82_9STRA) HSP 1 Score: 102 bits (253), Expect = 9.550e-23 Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
ILKA+LP++E+ DE GKW Q VS SRAE+ +Q + + L+ Q + +CA RER+ ++L+DE+IR++TL PERGLLL+R+RDE+RM + + +Y
Sbjct: 72 ILKAMLPSREWKDENGKWQQNVSMEPSSRAEVLELQETLASNLVKEQAKQVGICANRERLHAQLFDEIIRQVTLACPERGLLLMRVRDEIRMTIAVYQALY 172
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.180e-22 Identity = 49/134 (36.57%), Postives = 83/134 (61.94%), Query Frame = 1
Query: 250 QPVGAGLRLAGAGVAAGIVRHKRRPHGDGDENIILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
+P+ GL+ + AA I K + ++ +++P +E+ D +G W+Q +S +R ++ +Q ++D RL+ Q R +C VRE ++S+ +DE+IR +TL SPERGLLLLR+RDE+RM +D + +Y
Sbjct: 30 EPLFVGLQPSSHTKAAAIANIKADGANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLY 163
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN) HSP 1 Score: 99.8 bits (247), Expect = 1.670e-22 Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
++ ++LP +E+ +G W+Q VS +R ++ +Q +D RL+ Q R +C VRE ++S+ YDE+IR+ITL PERGLLLLR+RDE+RM +D + +Y
Sbjct: 1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLY 101
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A485KMQ9_9STRA (Aste57867_9352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMQ9_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.640e-22 Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
I+KA+LP++E+ DE GKW Q VS SR E+ +Q + LI Q + +CA RER+ ++L+DE+IR++TL PERGLLLLR+RDE+RM ++ + +Y
Sbjct: 56 IMKAMLPSREWRDENGKWQQNVSLAPSSRTEVLELQEFLAENLIKEQAKKVGICANRERLHAQLFDEIIRQVTLACPERGLLLLRVRDEIRMTIEAYQALY 156
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 4.380e-22 Identity = 44/101 (43.56%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
+L A+LP + + ++ G W++ VS+ +R ++ +Q ++DA+LI Q R +C VRE I+S+ +DE+IR++T+ SPERGLLLLR+RDE+RM D + +Y
Sbjct: 44 VLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLY 144
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A7S3HYZ7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HYZ7_9SPIT) HSP 1 Score: 97.4 bits (241), Expect = 5.480e-22 Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIYR 654
IL AILP +E+V+ W+Q VS SR ++ ++ +D +L+ Q R +C VRE +FS+ +DE+IR++TL PERGLLLLR+RDE+ M + + +Y+
Sbjct: 57 ILNAILPPREWVENGKHWIQYVSHQPASRIDVARLREMLDQKLMERQARESGICPVREELFSQCFDEIIRQVTLNLPERGLLLLRVRDEIMMTIAAYQTLYQ 158
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A6G0XHF9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHF9_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 6.360e-22 Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
ILKA+LP++E+ DE GKW Q VS SRA Q + A+L Q + +CA RER+ ++L+DE+IR++TL PERGLLLLR+RDEMRM +D + +Y
Sbjct: 71 ILKAMLPSREWRDEHGKWQQNVSMTPSSRA-----QELLAAQLTKEQAKKLGICANRERLHAQLFDEIIRQVTLACPERGLLLLRVRDEMRMTIDAYQALY 166
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 6.400e-22 Identity = 44/101 (43.56%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
+L A+LP + + +E G W++ S+ +R ++ +Q ++DA+LI Q R +C VRE I+++ +DE+IRE+T+ SPERGLLLLR+RDE+RM D + +Y
Sbjct: 46 VLNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLY 146 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig77.62.1 >prot_P-littoralis_Contig77.62.1 ID=prot_P-littoralis_Contig77.62.1|Name=mRNA_P-littoralis_Contig77.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp MNPALSILSDLPTGVLTHHERAASSADGAIGPFNDEAVDDFSILKYEDPVback to top mRNA from alignment at P-littoralis_Contig77:219869..221478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig77.62.1 ID=mRNA_P-littoralis_Contig77.62.1|Name=mRNA_P-littoralis_Contig77.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1610bp|location=Sequence derived from alignment at P-littoralis_Contig77:219869..221478- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig77:219869..221478- >mRNA_P-littoralis_Contig77.62.1 ID=mRNA_P-littoralis_Contig77.62.1|Name=mRNA_P-littoralis_Contig77.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig77:219869..221478- (Pylaiella littoralis U1_48)back to top |