mRNA_P-littoralis_Contig77.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.62.1
Unique NamemRNA_P-littoralis_Contig77.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: D7G6Z9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z9_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 5.220e-93
Identity = 157/226 (69.47%), Postives = 171/226 (75.66%), Query Frame = 1
Query:    1 FILPMNPALSILSDLPTGVLTHHERAASSADGAIGPF---NDEAVDDFSILKYEDPVLARPGATFDMTKGHDSLPQYVSLYASNERQPVGAGLRLAGAGVAA-GIVRHK-RRPHGDGDE-NIILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIYRCV 660
            FI PM P  S L DLP G LT     A SA+ A GP     DE  DDFSILKYEDPVLARP   FDM  GHDSLPQY+SLYAS+ER+P  A  RLAG G AA G  R+  RRP G GD+   +LKAILPNKEY D AG+WVQ VS  VRSR ELE VQ+KV+ARL +LQ RPGAVCAVRE +FSELYDEVIREITLQSPERGLLLLRLRDE RMNLDT+AEIYRC+
Sbjct:   15 FIFPMIPEPSALGDLPLGALTE----AVSAESAAGPTCSSADEVDDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAGVGAAAPGSTRNTTRRPRGGGDDITAVLKAILPNKEYADAAGEWVQTVSGTVRSRGELEKVQNKVEARLATLQARPGAVCAVRESVFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCL 236          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A024UXY1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXY1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.570e-23
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            ILKA+LP++E+ DE GKW Q VS    SRAE+  +Q  + + L+  Q +   +CA RER+ ++L+DE+IR++TL  PERGLLL+R+RDE+RM +  +  +Y
Sbjct:   72 ILKAMLPSREWKDENGKWQQNVSMEPSSRAEVLELQETLASNLVKEQAKQVGICANRERLHAQLFDEIIRQVTLACPERGLLLMRVRDEIRMTIAVYQALY 172          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A024UX82_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UX82_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.550e-23
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            ILKA+LP++E+ DE GKW Q VS    SRAE+  +Q  + + L+  Q +   +CA RER+ ++L+DE+IR++TL  PERGLLL+R+RDE+RM +  +  +Y
Sbjct:   72 ILKAMLPSREWKDENGKWQQNVSMEPSSRAEVLELQETLASNLVKEQAKQVGICANRERLHAQLFDEIIRQVTLACPERGLLLMRVRDEIRMTIAVYQALY 172          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.180e-22
Identity = 49/134 (36.57%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  250 QPVGAGLRLAGAGVAAGIVRHKRRPHGDGDENIILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            +P+  GL+ +    AA I   K         + ++ +++P +E+ D +G W+Q +S    +R ++  +Q ++D RL+  Q R   +C VRE ++S+ +DE+IR +TL SPERGLLLLR+RDE+RM +D +  +Y
Sbjct:   30 EPLFVGLQPSSHTKAAAIANIKADGANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLY 163          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-22
Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            ++ ++LP +E+   +G W+Q VS    +R ++  +Q  +D RL+  Q R   +C VRE ++S+ YDE+IR+ITL  PERGLLLLR+RDE+RM +D +  +Y
Sbjct:    1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLY 101          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A485KMQ9_9STRA (Aste57867_9352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMQ9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.640e-22
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            I+KA+LP++E+ DE GKW Q VS    SR E+  +Q  +   LI  Q +   +CA RER+ ++L+DE+IR++TL  PERGLLLLR+RDE+RM ++ +  +Y
Sbjct:   56 IMKAMLPSREWRDENGKWQQNVSLAPSSRTEVLELQEFLAENLIKEQAKKVGICANRERLHAQLFDEIIRQVTLACPERGLLLLRVRDEIRMTIEAYQALY 156          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.380e-22
Identity = 44/101 (43.56%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            +L A+LP + + ++ G W++ VS+   +R ++  +Q ++DA+LI  Q R   +C VRE I+S+ +DE+IR++T+ SPERGLLLLR+RDE+RM  D +  +Y
Sbjct:   44 VLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLY 144          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A7S3HYZ7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HYZ7_9SPIT)

HSP 1 Score: 97.4 bits (241), Expect = 5.480e-22
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIYR 654
            IL AILP +E+V+    W+Q VS    SR ++  ++  +D +L+  Q R   +C VRE +FS+ +DE+IR++TL  PERGLLLLR+RDE+ M +  +  +Y+
Sbjct:   57 ILNAILPPREWVENGKHWIQYVSHQPASRIDVARLREMLDQKLMERQARESGICPVREELFSQCFDEIIRQVTLNLPERGLLLLRVRDEIMMTIAAYQTLYQ 158          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A6G0XHF9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHF9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.360e-22
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            ILKA+LP++E+ DE GKW Q VS    SRA     Q  + A+L   Q +   +CA RER+ ++L+DE+IR++TL  PERGLLLLR+RDEMRM +D +  +Y
Sbjct:   71 ILKAMLPSREWRDEHGKWQQNVSMTPSSRA-----QELLAAQLTKEQAKKLGICANRERLHAQLFDEIIRQVTLACPERGLLLLRVRDEMRMTIDAYQALY 166          
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.400e-22
Identity = 44/101 (43.56%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  349 ILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSKVDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRDEMRMNLDTHAEIY 651
            +L A+LP + + +E G W++  S+   +R ++  +Q ++DA+LI  Q R   +C VRE I+++ +DE+IRE+T+ SPERGLLLLR+RDE+RM  D +  +Y
Sbjct:   46 VLNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLY 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Z9_ECTSI5.220e-9369.47Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A024UXY1_9STRA2.570e-2347.52Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A024UX82_9STRA9.550e-2347.52Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S2UXS2_9STRA1.180e-2236.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y5N0_AURAN1.670e-2243.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A485KMQ9_9STRA2.640e-2247.52Aste57867_9352 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0XVN6_9STRA4.380e-2243.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3HYZ7_9SPIT5.480e-2243.14Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A6G0XHF9_9STRA6.360e-2250.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UH61_9STRA6.400e-2243.56Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:219869..221478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6Z9
PFAMsAx_dynein_light
Model size660
Max annot lvl2759|Eukaryota
KEGG koko:K10410
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.97e-91
EggNOG OGsKOG4001@1|root,KOG4001@2759|Eukaryota
Descriptiondynein heavy chain binding
Cds size648
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791588.8110826-CDS-P-littoralis_Contig77:219868..2199671680791588.8110826-CDS-P-littoralis_Contig77:219868..219967Pylaiella littoralis U1_48CDSP-littoralis_Contig77 219869..219967 -
1680791588.8319159-CDS-P-littoralis_Contig77:220303..2204531680791588.8319159-CDS-P-littoralis_Contig77:220303..220453Pylaiella littoralis U1_48CDSP-littoralis_Contig77 220304..220453 -
1680791588.8435147-CDS-P-littoralis_Contig77:220894..2212331680791588.8435147-CDS-P-littoralis_Contig77:220894..221233Pylaiella littoralis U1_48CDSP-littoralis_Contig77 220895..221233 -
1680791588.8547049-CDS-P-littoralis_Contig77:221406..2214661680791588.8547049-CDS-P-littoralis_Contig77:221406..221466Pylaiella littoralis U1_48CDSP-littoralis_Contig77 221407..221466 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791588.8655796-UTR-P-littoralis_Contig77:221466..2214781680791588.8655796-UTR-P-littoralis_Contig77:221466..221478Pylaiella littoralis U1_48UTRP-littoralis_Contig77 221467..221478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.62.1prot_P-littoralis_Contig77.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 219869..221466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.62.1

>prot_P-littoralis_Contig77.62.1 ID=prot_P-littoralis_Contig77.62.1|Name=mRNA_P-littoralis_Contig77.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MNPALSILSDLPTGVLTHHERAASSADGAIGPFNDEAVDDFSILKYEDPV
LARPGATFDMTKGHDSLPQYVSLYASNERQPVGAGLRLAGAGVAAGIVRH
KRRPHGDGDENIILKAILPNKEYVDEAGKWVQAVSSFVRSRAELEMVQSK
VDARLISLQGRPGAVCAVRERIFSELYDEVIREITLQSPERGLLLLRLRD
EMRMNLDTHAEIYRCV
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mRNA from alignment at P-littoralis_Contig77:219869..221478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.62.1 ID=mRNA_P-littoralis_Contig77.62.1|Name=mRNA_P-littoralis_Contig77.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1610bp|location=Sequence derived from alignment at P-littoralis_Contig77:219869..221478- (Pylaiella littoralis U1_48)
TTCATTCTTCCAATGAACCCCGCTCTCTCTATCCTCAGCGACCTACCGAC GGGTGTATTAACTCATCATGAGGTGTGGAGTGCAAAAAAGCTGTTCAGTG GAAGGGGGGTGATGTTTTAAGTCAAGATATGCATTCTCTCCGCGGGCATA ATTTATACAGCAGTAGTGAAGACAAAAAATATACCGGTACTCCGTATTAA CCGTTATTTGCAACCTCCTCCTGCCTGCTACGCACTTATACCCAGCGGGC AGCTTCCTCAGCCGATGGCGCCATCGGACCCTTCAATGACGAAGCGGTGG ATGACTTTTCGATCCTCAAGTATGAAGATCCGGTCCTGGCTAGACCGGGT GCCACTTTTGACATGACTAAGGGCCACGACAGCCTCCCTCAGTATGTTTC TCTCTACGCCTCCAACGAGCGTCAACCTGTCGGAGCCGGTCTGCGTTTGG CTGGGGCCGGTGTAGCAGCAGGGATCGTGAGGCACAAGAGGCGGCCACAT GGCGACGGGGATGAAAATATAATCCTCAAAGCTATACTTCCCAACAAAGA GTACGTCGATGAGGCAGGGAAGTGGGTGCAGGCGGTGAGCACTCGCACAG ATCCATTGAATTTGCAGTGCAGTTTCAGTACATGTTCAGTAGGGAAACTA ACTTTATCGTAGACCTGATACGTCTAGACTCATGTCGCATCAATGGCGTA GGCGTAGTGATTCGATACTGGGTGTGTGAGTTCTAGTAGCTACAGCAGTG AGGTGCCGACGTGACACTGTAGAAACGTGAAAGCTTTAAACATGGGGAAC ACGATTCTGTCAAGAATGTGACGACTATGTCATAAGTCATAGCTCTCACA AAAAATGTGACTCGCAGTTTCCATACAATAAACACAGATTATTGCTCGGA CGTGTACTTGTTGTAGTTCAAGGTACATCATGAATCAGGGCACAGCGGTA GAGGGGCCCGAGATGGCCTCGTCCAGCAGCACAGACTTATCGCCCAACTG GCTCAAATTTTACTGCCCTGAAAAGGTTTCCAGCTTCGTGCGGAGTAGGG CAGAGCTTGAGATGGTGCAGAGTAAGGTGGACGCACGATTGATATCCCTG CAAGGGCGCCCGGGAGCGGTATGTGCAGTGCGAGAGCGGATATTCTCCGA GCTCTACGATGAAGTTATCCGAGAGGTAAGCGACAAGAATCCCCCCCGGC TAGACGTAGGGTTCAGGTGTGTGTATGCGTCACGAATGATCACCGTAAGC AACCACGTAGACGTGAAAGTGAAAGAAATGTGTGCCTGGCAAAGTTGGAT AGCGTTATGATATCAATTTTAAGGAGAATATGATCGTTCTGTCATGCAGC GGCAGCGTACTCCACAACAGCAGGACAACACATGCTGGAAGCAGTGACAC CCCTTTCAAGCAAAGAAGTCGACACTGGCCTCCTCGTACGCTTGTGTCTT GTAAGCGTCGTTTTCAATCAAGAATTCAAATCTCTCTCCTTCTAATGGAC GATTTCAACAGATAACACTACAGAGCCCGGAACGGGGCTTGCTACTCCTG CGGCTGCGCGATGAAATGCGTATGAACTTAGATACCCACGCTGAGATCTA CAGGTGCGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:219869..221478-

>mRNA_P-littoralis_Contig77.62.1 ID=mRNA_P-littoralis_Contig77.62.1|Name=mRNA_P-littoralis_Contig77.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig77:219869..221478- (Pylaiella littoralis U1_48)
ATGAACCCCGCTCTCTCTATCCTCAGCGACCTACCGACGGGTGTATTAAC
TCATCATGAGCGGGCAGCTTCCTCAGCCGATGGCGCCATCGGACCCTTCA
ATGACGAAGCGGTGGATGACTTTTCGATCCTCAAGTATGAAGATCCGGTC
CTGGCTAGACCGGGTGCCACTTTTGACATGACTAAGGGCCACGACAGCCT
CCCTCAGTATGTTTCTCTCTACGCCTCCAACGAGCGTCAACCTGTCGGAG
CCGGTCTGCGTTTGGCTGGGGCCGGTGTAGCAGCAGGGATCGTGAGGCAC
AAGAGGCGGCCACATGGCGACGGGGATGAAAATATAATCCTCAAAGCTAT
ACTTCCCAACAAAGAGTACGTCGATGAGGCAGGGAAGTGGGTGCAGGCGG
TTTCCAGCTTCGTGCGGAGTAGGGCAGAGCTTGAGATGGTGCAGAGTAAG
GTGGACGCACGATTGATATCCCTGCAAGGGCGCCCGGGAGCGGTATGTGC
AGTGCGAGAGCGGATATTCTCCGAGCTCTACGATGAAGTTATCCGAGAGA
TAACACTACAGAGCCCGGAACGGGGCTTGCTACTCCTGCGGCTGCGCGAT
GAAATGCGTATGAACTTAGATACCCACGCTGAGATCTACAGGTGCGTT
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