mRNA_P-littoralis_Contig1192.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1192.2.1
Unique NamemRNA_P-littoralis_Contig1192.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.240e-74
Identity = 142/278 (51.08%), Postives = 172/278 (61.87%), Query Frame = 1
Query:  106 CGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPN--RTFGGEDTLRLCKRKGCMLKLLEAR---KTKERKQQSIHQ-PGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYL-ASGDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAH-VMVGEFWGVWYKAG--VGEPG-TRLVYC 906
            C ACL  + G   R  RAR  E + +F  E  I+  FP       G + L LCKR GC+L+L + +   +++ER  +   Q P   R     PEPV H KRR LDRYCT P AVE L   V I G VLDMC G EDAVA    ++C V TNDV +R    TNLDAS  +F   +  A+  +QPDWVVTSPPYKGA+ FV  A+ VA  GVALKLPLSF+EPC D G WL  NPP++C+FL R +YT AH V VGEFWGVWY  G   G+ G +RLV+C
Sbjct:   25 CSACL--EWGQDFRHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFC 300          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 4.110e-74
Identity = 144/291 (49.48%), Postives = 176/291 (60.48%), Query Frame = 1
Query:   97 SVICGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPN-RTFG-GEDTLRLCKRKGCMLKLLE----------ARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTR------RGVDTNLDASAPTFAQEYLASG-DQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAG---VGEPGTRLVY 903
            S  C ACL  DD +G R  R R    + AF R   ++  FP     G G D+L  CKR  C+LK  +          ARK K+++ +S     T       PEP +H+KRRHLDRYCTS  AVEAL+  V + G VLDMC G +DAVA  L  +C V TNDV +R      R  DT+LDAS  TFA E+LA G  QQP+ VV SPPYKGA+ FV  A+ VA++GVALK  LSF+EPC D   WL+ NPP++CVFL R  YTP HVM+GEFWGVWY  G       GT+LV+
Sbjct:   10 SETCDACLREDDAAGYRQLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARK-KQKRNRSEAATWTS-----APEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 4.890e-72
Identity = 117/212 (55.19%), Postives = 145/212 (68.40%), Query Frame = 1
Query:  241 DTLRLCKRKGCMLKLLEARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLASGD-QQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAG 873
            D L LCKR GC+L+L    + ++ +  +  +     K    PEPV  LKRR +DRYCTSPA +EAL+  V I G VLDMC G +DAVA+ L  +C V TNDV  R    TNLDAS+ +F  ++LA+   QQPDW+VTSPPYKGA+ FV  A+ VA+ GVALKLPLSF+EPC D   WLQ NPP++C+ + R RY PAHV VGEFWGVWY  G
Sbjct:   16 DKLVLCKRAGCLLELFVLNQQRDSRAPTKRRAKRGPKWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPG 227          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.700e-57
Identity = 97/185 (52.43%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  361 VPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLAS-GDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAH-VMVGEFWGVWYKAGVG-EPGTRLVYC 906
             PEP  HL+RR LDRYCTSP A++A +  V I G VLDMC G  DAVA  L ++C + TNDV + R  DTNLDAS  +F +++LA+   ++P+WV TSPPY  A+ FV  AM +A  GV  K+ + F+EPC D G WLQ NPPS+CVFL R +YT A+     EFWGVWY   +     TRLV+C
Sbjct:   15 APEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNRTRLVFC 199          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.010e-55
Identity = 111/221 (50.23%), Postives = 137/221 (61.99%), Query Frame = 1
Query:  184 FAREPEISAMFPNRTFGGEDTLRL--CKRKGCMLKLLEAR-------KTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGV-----DTNLDASAPTFAQEYL-ASGDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVF 801
            F R       FP+    G    RL  C R  C+L+L   +       +TK R QQ + + G K     +PEP  H+KRR LDRYCTSP AVEAL+  V +EG VLDMC G  DA+A  LG +C V TND+ TR        DTNLDAS  +FA ++L A   Q+PDWV+TSPPYKGA+ +V  A+ +A  GVALKLPLSF+EPC D G WLQ NPP++CVF
Sbjct:    3 FYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQ-LARHGAKWTG--IPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVF 220          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.880e-44
Identity = 97/203 (47.78%), Postives = 121/203 (59.61%), Query Frame = 1
Query:  154 RARAAERIYAFAREPEISAMFPNRTFGG--EDTLRLCKRKGCMLKLL---EARKTKERKQ-----QSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLA-SGDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLP 729
            R R + ++ AF  E  I+  FP    GG    TL LCKR GC+L+L    E R +KER +     ++   P      + VPEP  HLKRR LDRYCTSP AVEAL+  V I G +LD+C G  DAVA  LG +C V TNDV + R  DTNLDAS  +F  ++ A S  ++PDWVVTSP YK A+ FV  AM +A  GV +  P
Sbjct:    2 RPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.370e-43
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query:  565 DTNLDASAPTFAQEYLASGD-QQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAGVGE 882
            DTNLDAS+ ++A +YLA+ + QQPDWVV SPPYKGA++FV  A+ VA+ GVALKLPLSF+EPC D   WLQ NPPS+C+ + R RY PAHV VGEFWGVWY  G G 
Sbjct:   13 DTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGS 119          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.650e-43
Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  475 MC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLAS-GDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAH-VMVGEFWGVWYKAGVG-EPGTRLVYC 906
            MC G  DAVA  L ++C + TNDV + R  DTNL+AS   F +++LA+   ++P+WVVTSPPY  A+ FV  AM +A  GVA K+P+ F+EPC D G WLQ NPPS+CVFL R +YT A+    GEFWGVWY   +     TRLV+C
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFC 147          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.960e-41
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  565 DTNLDASAPTFAQEYLASG-DQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAGVG---EPGTRLVY 903
            DTNLDAS+ +F  ++LA+  +QQPDWVVT PPY GA+ FV  A+ VA+ GVALKLPLSF+EPC D   WLQ NPP++C+ + R RY PAHV VGEFWGVWY  G G      T+L++
Sbjct:   54 DTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLF 170          
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.740e-40
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  553 RRGVDTNLDASAPTFAQEYLASGD-QQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAGVGEPG---TRLVY 903
            R   DTNLDAS+ +FA +YLA+ + QQPDWVV+SPPY+GA+ FV  A+ VA+ GVALKLPLSF+EPC D  VWLQ NPP++C+ + R RY PA V VGEF GVWY  G G      T+L++
Sbjct:   10 RLSPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGSSSSDSTKLLF 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK3_9PHAE1.240e-7451.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE4.110e-7449.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE4.890e-7255.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G0Y0_ECTSI1.700e-5752.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJU4_ECTSI1.010e-5550.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE2.880e-4447.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAM1_9PHAE1.370e-4365.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.650e-4352.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSV3_9PHAE5.960e-4158.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE2.740e-4058.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1192contigP-littoralis_Contig1192:5107..7090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size981
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789501.9685032-UTR-P-littoralis_Contig1192:5106..55331680789501.9685032-UTR-P-littoralis_Contig1192:5106..5533Pylaiella littoralis U1_48UTRP-littoralis_Contig1192 5107..5533 -
1680789501.9778454-UTR-P-littoralis_Contig1192:5806..58771680789501.9778454-UTR-P-littoralis_Contig1192:5806..5877Pylaiella littoralis U1_48UTRP-littoralis_Contig1192 5807..5877 -
1680789501.998149-UTR-P-littoralis_Contig1192:6267..62961680789501.998149-UTR-P-littoralis_Contig1192:6267..6296Pylaiella littoralis U1_48UTRP-littoralis_Contig1192 6268..6296 -
1680789502.0066304-UTR-P-littoralis_Contig1192:7026..70901680789502.0066304-UTR-P-littoralis_Contig1192:7026..7090Pylaiella littoralis U1_48UTRP-littoralis_Contig1192 7027..7090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789501.988309-CDS-P-littoralis_Contig1192:5877..62671680789501.988309-CDS-P-littoralis_Contig1192:5877..6267Pylaiella littoralis U1_48CDSP-littoralis_Contig1192 5878..6267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1192.2.1prot_P-littoralis_Contig1192.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1192 5878..6267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1192.2.1

>prot_P-littoralis_Contig1192.2.1 ID=prot_P-littoralis_Contig1192.2.1|Name=mRNA_P-littoralis_Contig1192.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MSVICGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPNRTFGGED
TLRLCKRKGCMLKLLEARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRR
HLDRYCTSPAAVEALVAEVRIEGVVLDMC*
back to top

mRNA from alignment at P-littoralis_Contig1192:5107..7090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1192.2.1 ID=mRNA_P-littoralis_Contig1192.2.1|Name=mRNA_P-littoralis_Contig1192.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1984bp|location=Sequence derived from alignment at P-littoralis_Contig1192:5107..7090- (Pylaiella littoralis U1_48)
CGGTGGAGAGTTCGGATCAGCACGGAACATTGGGAAGGGCTAGAACAAGT CCTCCTCTTCGTCGGTAAGTGGTTGATGGACGCAGAAAAGATCGGTAGGG ACTACATTCCTTTGCGCTGAAGGTGGTAGGTGTGAGCCACCCCGACAGGG TGGTAGTTGCGCCGTCAGGCTGAAGGGCTGTTTTCGTGCAAAAGGCCCGG TCGCAATACTGAAGCAACGGCCACCATAAGCTGGGTATGTGGGTAAGGGC ACGGGTAGAACACATCGGAGGGGTGGCACTTTTTGGATCGGCACTACAGC TCGAGAAAATGAATATTGAACACAGTCGAAAATGGCCCAAAAAATGTCGA GCTGATCCCGCCGCGATTTTTCCGTTGGGTCTGATATACTGCTGTACAGA GTACCGGGCGCAAAATCGTACGCTCTGCTGTGCGTGTGCGTCGTGCCGTC GTGCCTCGGGCTCTGCTCTGCTGCTGTACATACAGCAGTGAGGTAGCCTG GTACTCTGCTGTGCTGCGGTAACTCCACTGGCACTGCTGTACGTACTATA CACAGAGTACAATGTACTGCTGTACAGCATCGGCACTGCTGTACCTAGTA CAAAGGAATATTTCGTGATGTATTAGGTACTGCTGTAAGAGGGTGCCGGT ACGTGTACGCTATGTATGCTGTATATATGTGCAAGGGCAGCAACCATTAC TACCCAGCGTCTTGCTGGTTCAGTACCAATTTAATATTTCCTCCCTCACT CTTATTCCAACCCTGCCTCAGGACACGTGATACACGACAATCAGGCGAAT CGACTAGCGTTTGAGCGGCTGATATGTCGGTGATCTGCGGCGCTTGTCTC TCTGGAGATGATGGTTCAGGGATACGAGCCCCGAGGGCACGTGCCGCCGA GAGGATTTACGCTTTCGCTAGGGAGCCCGAAATCTCGGCAATGTTCCCTA ATCGCACCTTCGGAGGCGAAGATACACTGCGGCTGTGCAAGCGTAAAGGA TGTATGCTTAAGCTGTTGGAGGCGCGGAAGACGAAGGAGAGGAAACAGCA GTCGATACACCAGCCGGGCACGAAACGGAAAAACTTTTTCGTTCCCGAGC CGGTCATGCACTTGAAACGTCGGCATCTTGATCGATACTGCACGTCGCCT GCAGCAGTAGAGGCTTTGGTTGCTGAGGTTAGAATTGAAGGAGTCGTACT GGACATGTGTTGAGGCCGTGAGGATGCTGTGGCGGTTATTCTCGGCACCA GTTGTACAGTCGCGACGAACGACGTGAGGACCAGGTGAGATGGTGGCAGC GGTAGGATGATGCAGGTATTGTGTGGGGGGCGTGTGGTTGTCGCATCTTG CTTCATGCCTGTTGAAGATGGAAAACCTGAACTCTTTGTTTTAGTTGTGA TGGTGTTGTTGGTGTGCAGCAGGCATGCTCAACTTCTACCTGTTGTGTGC CGTCTTGGTCGTGACGGCATACTTAGACCCTCTTTGTTATTTTCGTGTTA TGTACTACTTTTAGGAAGTACTGACCTGCCGATTGCTGATCGTTCTGTTC TTGCCAGGCGGGGGGTGGACACCAACCTGGATGCGAGCGCCCCCACTTTT GCTCAGGAATACCTTGCCAGTGGTGATCAACAACCAGACTGGGTAGTTAC CAGCCCCCCTTACAAAGGCGCAATAAACTTCGTCACGGGGGCAATGGAGG TAGCTAGGTACGGCGTTGCGCTCAAACTCCCCTTATCCTTCATGGAACCG TGTGGGGATCCCGGGGTATGGCTTCAAAGGAATCCCCCATCTATCTGCGT ATTCTTGATGAGGGTGAGGTACACCCCGGCGCATGTCATGGTGGGCGAAT TTTGGGGCGTGTGGTACAAGGCTGGGGTCGGTGAACCGGGGACAAGGCTG GTTTATTGCACCTGAGTCGTCCTTGCGACGTTAATTTTACAATATTAGAA GTTACAGTTGGCGCTCTAGCTGCGTTTCCTCGGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1192:5107..7090-

>mRNA_P-littoralis_Contig1192.2.1 ID=mRNA_P-littoralis_Contig1192.2.1|Name=mRNA_P-littoralis_Contig1192.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1192:5107..7090- (Pylaiella littoralis U1_48)
ATGTCGGTGATCTGCGGCGCTTGTCTCTCTGGAGATGATGGTTCAGGGAT
ACGAGCCCCGAGGGCACGTGCCGCCGAGAGGATTTACGCTTTCGCTAGGG
AGCCCGAAATCTCGGCAATGTTCCCTAATCGCACCTTCGGAGGCGAAGAT
ACACTGCGGCTGTGCAAGCGTAAAGGATGTATGCTTAAGCTGTTGGAGGC
GCGGAAGACGAAGGAGAGGAAACAGCAGTCGATACACCAGCCGGGCACGA
AACGGAAAAACTTTTTCGTTCCCGAGCCGGTCATGCACTTGAAACGTCGG
CATCTTGATCGATACTGCACGTCGCCTGCAGCAGTAGAGGCTTTGGTTGC
TGAGGTTAGAATTGAAGGAGTCGTACTGGACATGTGTTGA
back to top