mRNA_P-littoralis_Contig1192.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.240e-74 Identity = 142/278 (51.08%), Postives = 172/278 (61.87%), Query Frame = 1
Query: 106 CGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPN--RTFGGEDTLRLCKRKGCMLKLLEAR---KTKERKQQSIHQ-PGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYL-ASGDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAH-VMVGEFWGVWYKAG--VGEPG-TRLVYC 906
C ACL + G R RAR E + +F E I+ FP G + L LCKR GC+L+L + + +++ER + Q P R PEPV H KRR LDRYCT P AVE L V I G VLDMC G EDAVA ++C V TNDV +R TNLDAS +F + A+ +QPDWVVTSPPYKGA+ FV A+ VA GVALKLPLSF+EPC D G WL NPP++C+FL R +YT AH V VGEFWGVWY G G+ G +RLV+C
Sbjct: 25 CSACL--EWGQDFRHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFC 300
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 239 bits (610), Expect = 4.110e-74 Identity = 144/291 (49.48%), Postives = 176/291 (60.48%), Query Frame = 1
Query: 97 SVICGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPN-RTFG-GEDTLRLCKRKGCMLKLLE----------ARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTR------RGVDTNLDASAPTFAQEYLASG-DQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAG---VGEPGTRLVY 903
S C ACL DD +G R R R + AF R ++ FP G G D+L CKR C+LK + ARK K+++ +S T PEP +H+KRRHLDRYCTS AVEAL+ V + G VLDMC G +DAVA L +C V TNDV +R R DT+LDAS TFA E+LA G QQP+ VV SPPYKGA+ FV A+ VA++GVALK LSF+EPC D WL+ NPP++CVFL R YTP HVM+GEFWGVWY G GT+LV+
Sbjct: 10 SETCDACLREDDAAGYRQLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARK-KQKRNRSEAATWTS-----APEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 231 bits (590), Expect = 4.890e-72 Identity = 117/212 (55.19%), Postives = 145/212 (68.40%), Query Frame = 1
Query: 241 DTLRLCKRKGCMLKLLEARKTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLASGD-QQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAG 873
D L LCKR GC+L+L + ++ + + + K PEPV LKRR +DRYCTSPA +EAL+ V I G VLDMC G +DAVA+ L +C V TNDV R TNLDAS+ +F ++LA+ QQPDW+VTSPPYKGA+ FV A+ VA+ GVALKLPLSF+EPC D WLQ NPP++C+ + R RY PAHV VGEFWGVWY G
Sbjct: 16 DKLVLCKRAGCLLELFVLNQQRDSRAPTKRRAKRGPKWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPG 227
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 193 bits (491), Expect = 1.700e-57 Identity = 97/185 (52.43%), Postives = 123/185 (66.49%), Query Frame = 1
Query: 361 VPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLAS-GDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAH-VMVGEFWGVWYKAGVG-EPGTRLVYC 906
PEP HL+RR LDRYCTSP A++A + V I G VLDMC G DAVA L ++C + TNDV + R DTNLDAS +F +++LA+ ++P+WV TSPPY A+ FV AM +A GV K+ + F+EPC D G WLQ NPPS+CVFL R +YT A+ EFWGVWY + TRLV+C
Sbjct: 15 APEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNRTRLVFC 199
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.010e-55 Identity = 111/221 (50.23%), Postives = 137/221 (61.99%), Query Frame = 1
Query: 184 FAREPEISAMFPNRTFGGEDTLRL--CKRKGCMLKLLEAR-------KTKERKQQSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGV-----DTNLDASAPTFAQEYL-ASGDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVF 801
F R FP+ G RL C R C+L+L + +TK R QQ + + G K +PEP H+KRR LDRYCTSP AVEAL+ V +EG VLDMC G DA+A LG +C V TND+ TR DTNLDAS +FA ++L A Q+PDWV+TSPPYKGA+ +V A+ +A GVALKLPLSF+EPC D G WLQ NPP++CVF
Sbjct: 3 FYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQ-LARHGAKWTG--IPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVF 220
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.880e-44 Identity = 97/203 (47.78%), Postives = 121/203 (59.61%), Query Frame = 1
Query: 154 RARAAERIYAFAREPEISAMFPNRTFGG--EDTLRLCKRKGCMLKLL---EARKTKERKQ-----QSIHQPGTKRKNFFVPEPVMHLKRRHLDRYCTSPAAVEALVAEVRIEGVVLDMC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLA-SGDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLP 729
R R + ++ AF E I+ FP GG TL LCKR GC+L+L E R +KER + ++ P + VPEP HLKRR LDRYCTSP AVEAL+ V I G +LD+C G DAVA LG +C V TNDV + R DTNLDAS +F ++ A S ++PDWVVTSP YK A+ FV AM +A GV + P
Sbjct: 2 RPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.370e-43 Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query: 565 DTNLDASAPTFAQEYLASGD-QQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAGVGE 882
DTNLDAS+ ++A +YLA+ + QQPDWVV SPPYKGA++FV A+ VA+ GVALKLPLSF+EPC D WLQ NPPS+C+ + R RY PAHV VGEFWGVWY G G
Sbjct: 13 DTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGS 119
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 155 bits (393), Expect = 1.650e-43 Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 1
Query: 475 MC*GREDAVAVILGTSCTVATNDVRTRRGVDTNLDASAPTFAQEYLAS-GDQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAH-VMVGEFWGVWYKAGVG-EPGTRLVYC 906
MC G DAVA L ++C + TNDV + R DTNL+AS F +++LA+ ++P+WVVTSPPY A+ FV AM +A GVA K+P+ F+EPC D G WLQ NPPS+CVFL R +YT A+ GEFWGVWY + TRLV+C
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFC 147
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.960e-41 Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1
Query: 565 DTNLDASAPTFAQEYLASG-DQQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAGVG---EPGTRLVY 903
DTNLDAS+ +F ++LA+ +QQPDWVVT PPY GA+ FV A+ VA+ GVALKLPLSF+EPC D WLQ NPP++C+ + R RY PAHV VGEFWGVWY G G T+L++
Sbjct: 54 DTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLF 170
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.740e-40 Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 553 RRGVDTNLDASAPTFAQEYLASGD-QQPDWVVTSPPYKGAINFVTGAMEVARYGVALKLPLSFMEPCGDPGVWLQRNPPSICVFLMRVRYTPAHVMVGEFWGVWYKAGVGEPG---TRLVY 903
R DTNLDAS+ +FA +YLA+ + QQPDWVV+SPPY+GA+ FV A+ VA+ GVALKLPLSF+EPC D VWLQ NPP++C+ + R RY PA V VGEF GVWY G G T+L++
Sbjct: 10 RLSPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGSSSSDSTKLLF 130 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1192.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1192.2.1 >prot_P-littoralis_Contig1192.2.1 ID=prot_P-littoralis_Contig1192.2.1|Name=mRNA_P-littoralis_Contig1192.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp MSVICGACLSGDDGSGIRAPRARAAERIYAFAREPEISAMFPNRTFGGEDback to top mRNA from alignment at P-littoralis_Contig1192:5107..7090- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1192.2.1 ID=mRNA_P-littoralis_Contig1192.2.1|Name=mRNA_P-littoralis_Contig1192.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1984bp|location=Sequence derived from alignment at P-littoralis_Contig1192:5107..7090- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1192:5107..7090- >mRNA_P-littoralis_Contig1192.2.1 ID=mRNA_P-littoralis_Contig1192.2.1|Name=mRNA_P-littoralis_Contig1192.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1192:5107..7090- (Pylaiella littoralis U1_48)back to top |