prot_P-littoralis_Contig76.190.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig76.190.1
Unique Nameprot_P-littoralis_Contig76.190.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1066
Homology
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 1048 bits (2710), Expect = 0.000e+0
Identity = 736/1015 (72.51%), Postives = 778/1015 (76.65%), Query Frame = 0
Query:    1 MTQPPDPAKLAGDLSQRIINHGDALAG--PGKPPLKLLKWALGQLEECARTRSVPPSNVVDVAMEAIKEEIGVHP-LKPPPAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKGKVVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGG--------ISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREITRAREIEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKVPVRVPLAGEELRAFREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVASLFSKYSKPQHLMFGYYDPQVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMQEAGAAMQEGTRGGKNKLQQDSGKRRHRGDFGSGNEEAEAADGAGGDVDGGQTPPXXXXXXXXXXXXXRQREPVVDALRAGAGEGKESAFFQDSGAVPTKLEQEYQELEVLCRVVYVDSQGLSDSRSVKHTVVHLAPKMLIVMGGSARAKRELVLHVRNQLEQXXXXXXXXXXXXXXXXXXXXPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXECRFVVVDKAMERLPVALDSGAFDVLLHDSLHTQLKWKQLNNYGVAHMECRVDSRGDTPLLCAKPRGEKVGHPAMFLSLGNVNI 1004
            M QP D A+LA DLS+R++NH  A A   PGK PLKLL+WAL QLEECARTRSVP SNVV+VAM AIK+E+GV    + PPAA  A                   XXXXXXXXXXXXXXXX         RSKGKVVFTPLYGC+EG TGV PVSSILEVGGVTILLDCGWDI FDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAY+SR HEGNFQAFDLDDVD AFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYN++ ERHLR SAL TL RPSVLITDAHN+ TGG          R  RE +LISTVMDTVRGGGNVLLPTDTAGRVLELLVLL+++WQKHRLGSYKLVLLHNTAFNT EFAK     LEWMSE+IG+AFDLQRSNPFELRNVHIMHSLEELD+LG+DPKVV+ATDMSLD+GFSKALL+RWASGGANTILLTG GHG+TTAR L   +  R+ EA                            XXXXXXXXXXXXXXXXXXXXXXXXXXXX           V VPVRVPLAGEEL+AFR+E   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AIVASLFSKYSKPQHLMFGYYDP VPTDEYGVKETEPIGWLAAAMQQQNSEMPAAM                                                       XXXXXXXXXXXXX   EPVVDALRA AGEGKESAFFQDSGAVPTKLEQE QELEVLCRVVYVDS+GLSD  SVK+T V LAPKMLIV GGS RAK ELV +VR+ +E        XXXXXXXXXXXXX                XXXXXXXXXXXX   CRFVVV+KAME +PVALDSGAFDVLLHDSLHT LKWKQL+NYGVAH+ECRVD RGD PLLCAKPR E+VGHPAMFLS+G VN+
Sbjct:    1 MAQPLDAARLAHDLSKRMMNHHGATAAAVPGKAPLKLLQWALSQLEECARTRSVPASNVVEVAMAAIKDEMGVPAGEQQPPAAGVAAHPASAPRTSGSAVDGSSSXXXXXXXXXXXXXXXX---------RSKGKVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQ---LEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSEYRKSEAGRRAAAKDAAAAAGRGARVGYSGAVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMVVP-----VTVPVRVPLAGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRR-AIVASLFSKYSKPQHLMFGYYDPHVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVVDALRASAGEGKESAFFQDSGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVRHAVEPAAAGRRAXXXXXXXXXXXXX----------------XXXXXXXXXXXXDVACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRVDPRGDVPLLCAKPRAERVGHPAMFLSVGKVNV 972          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 620 bits (1598), Expect = 1.300e-204
Identity = 419/959 (43.69%), Postives = 530/959 (55.27%), Query Frame = 0
Query:  133 VVFTPLYGC-EEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGN--FQAFDLDDVDTAFARFKTLKFSQHLTFS--GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHN----SPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREITRAREIEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKVPVRVPLAGEELRAFREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIV-ASLFSKYSKPQHLMFGYYDPQVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMQEAGAAMQEGTRGGKNKLQQDSGKRRHRGDFGSGNEEAEAADGAGGDVDGGQTPPXXXXXXXXXXXXXRQREPVVDALRAGAGEG--KESAFFQDSGAVPTKLEQEYQELEVLCRVVYVDSQGLSDSRSVKHTVVHLAPKMLIVMGGSARAKRELVLHVRNQLEQXXXXXXXXXXXXXXXXXXXXPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXECRFVVVDKAMERLPVALDSGAFDVLLHDSLHTQLKWKQLNNYGVAHMECRVD------------SRGDTPLLCAKPRGEK--VGHPAMFLSLGNVNIVQLQKSLEKAGVSVKFLSGTLRCEGGVTVSPGKDGKMELEGPLCDAYFRVREIMYRQYVIV 1065
            V FTPLYGC ++ G G GPV S+LEVG VTILLDCGWDI FD +LL PL  VV R+DLVLISH DLEHLGGLPYA GKLG++A V+ATLP  KMGQM VYDA+  R  E N  F+AF LDD D AF RF+ LK+SQHL FS  GRGAGVTITPYAAG +IG ++WR+ WQT+DNDIVYA +YNH RE HL   A+ TL+RPS++ITDAH      P     R +  T++++    TVR GGNVLLP DTAGRVLELL+LLD HW +++LGSY LVLLH+ AFNT EFAK     LEWMS+ I K FDLQRSNPFE+R+V + HSLEEL  LG  P VVLATD+SLD+GF+KALL+ WA+   N +LLT  GHG + AREL     A    A                                                                   V+VP RVPL GEEL A+ EEXXXXXXXXXXXXXXXXX             XXXXXXXXXX           +V ASLFSK+SKPQHLMFG++D  V  D+YGV+E EPI WLA +MQ++N         +G   +EG R     L+Q                +A AA                              +  V A  A A      +SAF++D+G +P+K+  + +EL V  RV Y+D +GLSD RSV++ +  + P+ L+++GGS +A   L    R++                                                      C  V   ++ + +  ALD+  FDVL+HDSL+T+L+W+ +  Y +A ++  V              R   P+L      E+   G PA+F+S G+V + QL  +L KAG++    +  L   G + V+ G DG ++++GPL D YF VR IMYRQY IV
Sbjct:   48 VTFTPLYGCFDDTGRGAGPVCSLLEVGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMRSLEANGTFKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTA---TVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQ---LEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELLRGVTAHVRAAAAAGGVEEAPKQRIV----------------------------------------------------VEVPERVPLVGEELTAYLEEXXXXXXXXXXXXXXXXXAEEMERGQGLADSXXXXXXXXXXAAVAHVNKRRRLVNASLFSKFSKPQHLMFGFHDAMVEVDDYGVREAEPIAWLAVSMQERNDT-------SGLIHEEGQR---RLLEQ----------------QATAA----------------HLSSAMQVVGLSDADGAVSAATAAAQTALRSDSAFYEDTGVLPSKVVLQERELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDARDR----------------------------------------------------HICSAVFTPRSGDTVRAALDTDVFDVLVHDSLYTRLRWQSVKGYELAQVDSAVAPQPRPSGVLGKRERPPPPILFPPQDREEGETGRPAVFVSFGDVQLTQLSTALRKAGMTTALAAAKLTVSGTIVVTKGADGLLKIDGPLSDTYFAVRSIMYRQYTIV 854          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: A0A7S0N1Z8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1Z8_9CHLO)

HSP 1 Score: 345 bits (884), Expect = 7.800e-105
Identity = 189/383 (49.35%), Postives = 252/383 (65.80%), Query Frame = 0
Query:  132 KVVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQH--LTFS-GRG--AGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREITRA 509
            ++ FTPL G         P+S +LE+    ILLDCGW+ + D A ++P+ + V  ID VL+SH D  HLG LPY  GK G++A VYATLPV KMGQM +YD YLSR    +  AFDLDDVD AFA    LK+SQH  LT S GR   A VT+TPY AG ++G  +W++S +TED  +VYA  +NH +ERHL  + L + NRPS+LITDA N+     +R AR+ +L  TV   +RGGG+VL+P DTAGRVLEL++ L+++W   +L SYKLVLL N A+NT EFAK     +EWM++ I   FD  R+N F+ R++H+ HS+EEL  LG  PK+V+A+  SL+ G ++ L V WA+   N +L   MG  +T ARE+   T A
Sbjct:    6 RIQFTPLNGAHS----ETPLSYLLEIDDFKILLDCGWNDKLDLADIQPIVDRVPEIDAVLLSHSDTTHLGALPYLVGKKGLKAPVYATLPVHKMGQMYMYDHYLSRQAGEDQTAFDLDDVDAAFALITPLKYSQHVHLTASHGRSTSAAVTVTPYNAGHLLGGTLWKISKETED--VVYAVDFNHKKERHLNGTVLESFNRPSLLITDAFNAANRPPARAARDKELTDTVAKVLRGGGSVLIPIDTAGRVLELVLHLEQYWTVAKLASYKLVLLTNVAYNTMEFAK---SHIEWMNDAISTTFDQTRTNAFKTRHLHLCHSVEELAGLGPGPKLVMASMQSLEVGPARELFVTWATNPRNLLLFPDMGQPNTLAREVMRCTAA 379          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: C1FDL7_MICCC (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC)

HSP 1 Score: 356 bits (913), Expect = 1.380e-104
Identity = 187/377 (49.60%), Postives = 252/377 (66.84%), Query Frame = 0
Query:  132 KVVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREITR 508
            ++ F+PLYG +  G G  P   +L++ G  ILLDCGW+  FD  LLEPL +V   +D VLISHPD EHLG LPYAFGKLGMR KVYATLPV KMG M +YD +LSR    +F+ F LDD+DTAF+ F  ++++Q     G GAG+TITPYAAG M+G A+W+V  +T+D  +VYA  +NH RE+HL  + L ++ RP+VLITDA N+     S+T RE  LI  ++ TVR  GNVL+P D AGRVLELL++L+E W + +L +Y+LVLL   A+NT EFA+     LEWM E +G+ FD +R N F  R++ + HS++E   L   PKVVLA+  SLD G S+ + V WA    N I+ T      + +RE+  +++
Sbjct:    7 RIKFSPLYGVQ--GIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDIDTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKVHKETDD--VVYAVNFNHRREKHLNGTVLESIKRPAVLITDASNARRLPPSKT-RENDLIEAILRTVRQDGNVLIPIDPAGRVLELLLVLEERWSQKQLAAYQLVLLTKVAYNTLEFAR---SHLEWMGEHVGQYFDRERHNAFNTRHLKLCHSIDEFRALPQGPKVVLASFGSLDAGASRHIFVEWAPDPRNLIVFTDRLQPGSLSREVCRLSQ 375          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO)

HSP 1 Score: 348 bits (894), Expect = 1.130e-102
Identity = 181/379 (47.76%), Postives = 246/379 (64.91%), Query Frame = 0
Query:  135 FTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREITRAREIE 513
            F PL G      G  P+  +LEV     LLDCGWD + +   L+ L   V+++D VL+SH D +HLG LPYA GKLG+   VYATLPV KMGQM +YD YLS+  E  ++ F+L+DVD AF  F  ++++Q +  +G+G G+TITP+ AG  +G   WR++ + ED  I+YA  YNH +ERHL  +AL T NRP+VLITDA+N  T   SR  R+  L++ VM T+R GGNVL+P DTA RVLELL++LD HW+  ++G Y LVLL+N A+N  EFAK     LE+M+ +I K+F+  R N F+ +NVH+ HSLEEL++L + PKVVLA+  SL+ G  + LLV WAS   N IL        T +  ++    + E E
Sbjct:   18 FVPLCGVH----GQEPMCYLLEVDAFVFLLDCGWDDRTEVMDLKELEAHVEKVDAVLVSHADTKHLGALPYAVGKLGLDCPVYATLPVHKMGQMVLYDLYLSKRAEEEYETFNLNDVDRAFGMFNPMRYAQQINLTGKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLYSLVLLNNVAYNVVEFAK---SMLEFMNSDISKSFEHTRDNVFDCKNVHLCHSLEELEELPDQPKVVLASMASLEAGLGRNLLVDWASDPDNLILFVERAQAGTLSSFIQTYMDSDETE 387          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: A0A6B2KYM6_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA)

HSP 1 Score: 345 bits (886), Expect = 2.450e-101
Identity = 185/373 (49.60%), Postives = 243/373 (65.15%), Query Frame = 0
Query:  133 VVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELRE 505
            + F+PL G         P+  +LE+    ILLDCGW+  +D  LL+PL+ VV +I+ VLISHPDL HLG LPYA GKLG++AK+  T+PV+KMGQM +YDAY SR +   F  F+LDDVD AF  F  LK+SQ  T SG+G  + ITPYAAG +IG  +W++  +T++  I+YA  YNH +ERHL P+ L TL +P++LITDA N+     SR  R++ LI ++  T+R GGNVLLP DTAGRVLELLV+LD+HW  H   SY L+ L+N A+NT EFAK     LEWMSE I   F   R N F+  NV + H   E+++  + PKVVLA+  SL+ GF++ + V W S   N I+ T      T AR L E
Sbjct:    5 IKFSPLCGAYN----EDPLCYLLEIDEYRILLDCGWNDDYDVQLLKPLKRVVGKINAVLISHPDLHHLGALPYAVGKLGLKAKIIGTIPVYKMGQMFMYDAYQSRQNSEEFTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVLELLVILDQHWS-HFHYSYPLLFLNNVAYNTIEFAKSQ---LEWMSEAIMNKFISHRENCFQFSNVKLCHKTSEVNEFPS-PKVVLASMSSLNSGFAQDIFVEWCSDAKNRIIFTDTSRPGTIARRLME 366          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: A0A7S0WC87_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WC87_9CHLO)

HSP 1 Score: 342 bits (878), Expect = 9.170e-100
Identity = 181/377 (48.01%), Postives = 245/377 (64.99%), Query Frame = 0
Query:  132 KVVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQ-AFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREIT 507
            KV+ TPLYG +    G  P+   + + G  ILLDCGW+ QFD  LL PL  +   ID VLISHPD  HLG LPYAFGKLGM  KVYATLPV KMGQM +YD +L+R  + +FQ  F LDDVDTAFA F  +KF Q     G+G G+T+T YAAG  +G AVW++    ED  +VYA  YN  +ERHL  +A   ++RP++LITDA N      ++  R+ QL   ++ +VR  GNVL+P D AGRVLEL++LL+E W + +LGSY+++LL N A+NT +FAK     LEWM E +  AF+ +R NPF+ + + + HS+EEL  L   PKVVLA+  SL+ G ++ L   WA   +N ++LTG     + + E+ +++
Sbjct:   28 KVLVTPLYGVK----GEQPMCYHVSIDGCNILLDCGWNDQFDVDLLAPLAAIAPTIDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTRQDQCDFQETFSLDDVDTAFAAFVPVKFMQLSMLRGKGEGITVTAYAAGHTLGGAVWKIGKDAED--VVYAVDYNVRKERHLNGTAFDAIHRPALLITDACNVGRAVPNKATRDAQLTEAILSSVRKNGNVLIPIDPAGRVLELILLLEEKWAQRQLGSYQIILLTNVAYNTIDFAK---SHLEWMGEGVTTAFERKRENPFDTKFLTLCHSMEELKALPAGPKVVLASFGSLEAGPARHLFAEWADNASNLVILTGQPEPGSLSEEVLQMS 395          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: A0A7R9T8A6_MICPS (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T8A6_MICPS)

HSP 1 Score: 341 bits (875), Expect = 3.610e-98
Identity = 179/376 (47.61%), Postives = 249/376 (66.22%), Query Frame = 0
Query:  133 VVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELREITR 508
            V  TPLYG      G  P+S +L+  G  ILLDCGW+ +    +L+PL +V   +D VL+SHPD EHLG LPYAFGKLG+  KVYATLPV KMG M +YD +LSR ++ +F  F LDDVD AF  F  ++++QH    G G G+++T +AAG M+GA VW+V   +ED  ++YA  YNH +E+HL  + L +L RPSVLITD+  S T  +    R+ ++++ ++ +VR  GNVL+P D AGRVLELL+LL+E+W + +LG+Y+LVLL   A+NT EFA+     LEWM E + + FD+ R N F+ R + + HS+EEL  L   PKVVL++  SL+ G S+ L V WAS   N I+LT      T +RE+ +++R
Sbjct:   94 VKVTPLYGVY----GEDPLSYLLDWDGCKILLDCGWNDRLIVEMLDPLAQVAPSVDAVLVSHPDTEHLGALPYAFGKLGLNCKVYATLPVHKMGLMYMYDHFLSRSYDTDFTLFSLDDVDKAFGSFVPVRYAQHSALEGNGHGISVTAHAAGHMLGATVWKVHKDSED--VLYAVDYNHRKEKHLNGTTLESLKRPSVLITDSL-SVTREVQSKTRDDEIMNVILRSVRQDGNVLIPIDPAGRVLELLLLLEENWSQKQLGAYQLVLLSTVAYNTLEFAR---SHLEWMGENVSRNFDIDRHNVFKTRYLTLCHSIEELHALRPGPKVVLSSFGSLECGASRHLFVEWASDPRNLIILTDRTEPGTLSREVEDLSR 459          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: UPI00155AE16F (probable cleavage and polyadenylation specificity factor subunit 2 isoform X2 n=1 Tax=Drosophila subobscura TaxID=7241 RepID=UPI00155AE16F)

HSP 1 Score: 325 bits (834), Expect = 1.080e-97
Identity = 167/369 (45.26%), Postives = 241/369 (65.31%), Query Frame = 0
Query:  150 PVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLG--SYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTARELRE-ITRAREIEAE 515
            P   IL++  V ILLDCGWD +FD   ++ L+  V  +D VL+SHPD  HLG LPY  GKLG+   +YAT+PV+KMGQM +YD Y+S  + G+F  F LDDVDTAF +   LK++Q ++  G+G G++ITP  AG MIG  +W++  +  + DIVYAT +NH +ERHL    L  L RPS+LITDA+N+      R AR+ +L++ ++ TVR  GNVL+  DTAGR+LEL  +LD+ W+    G  +Y L LL+N ++N  EFAK     +EWMS+++ KAF+  R+NPF+ +++ + H+L ++  L   PKVVLA+   L+ GF++ L ++WAS   N+I+LT      T A +L E     R+IE +
Sbjct:   18 PPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIV-KVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAADTAGRMLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQ---IEWMSDKLTKAFEGARNNPFQFKHIQLCHTLADVYKLPAGPKVVLASTPDLESGFTRDLFIQWASNANNSIILTTRTSPGTLAMDLVENYAPGRQIELD 382          
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Match: K3WHC0_GLOUD (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD)

HSP 1 Score: 334 bits (857), Expect = 2.790e-97
Identity = 172/360 (47.78%), Postives = 247/360 (68.61%), Query Frame = 0
Query:  133 VVFTPLYGCEEGGTGVGPVSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMH-EGNFQAFDLDDVDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARETQLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLLHNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEELDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLT 491
            + FTPLYG           + +LE+  V ILLDCGW  Q+DT LL+PL+ V+ RIDLVLISH DL H+G LPYA GKLG++A +Y TLPV +MGQ+A+YDAY ++   +G+F  F LDDVD  F  FK LK+S+ LT +  G G+ ITP+ AG +IG ++WR+  +T+D  I+YA  YNH  E  L+ + L +  RP++LITD+ N  +       R+++++  ++ TVRGGGNVL+PTD++GRVLEL+ +LD++W +++L    + LLH+ ++ T + A+     LEW +E I K FD+ R NPF+  ++H++HSLEELD+L + PKVVL T  SL+ GF+K L +RWAS   N+I+ T
Sbjct:    4 ITFTPLYGVHSSDP---CCAYLLEIDDVCILLDCGWTDQYDTELLKPLQRVIDRIDLVLISHLDLAHMGALPYAIGKLGLKAPIYGTLPVHRMGQIALYDAYQAKTKSDGDFALFTLDDVDAVFENFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGSLWRIEKETDD--IIYAVDYNHRSEHVLQKTILDSFTRPTLLITDSMNIHSEQPKLKDRDSKIMVEILKTVRGGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRD-PIALLHDMSYYTPKAAQ---AMLEWCNERIAKNFDVGRQNPFQFSHIHLIHSLEELDNLPS-PKVVLTTSSSLECGFAKDLFIRWASDQRNSIIFT 353          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI0.000e+072.51Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA1.300e-20443.69Cleavage and polyadenylation specificity factor su... [more]
A0A7S0N1Z8_9CHLO7.800e-10549.35Cleavage and polyadenylation specificity factor su... [more]
C1FDL7_MICCC1.380e-10449.60Cleavage and polyadenylation specificity factor su... [more]
A0A6U9RRA8_9CHLO1.130e-10247.76Cleavage and polyadenylation specificity factor su... [more]
A0A6B2KYM6_9EUKA2.450e-10149.60Cleavage and polyadenylation specificity factor su... [more]
A0A7S0WC87_9CHLO9.170e-10048.01Cleavage and polyadenylation specificity factor su... [more]
A0A7R9T8A6_MICPS3.610e-9847.61Cleavage and polyadenylation specificity factor su... [more]
UPI00155AE16F1.080e-9745.26probable cleavage and polyadenylation specificity ... [more]
K3WHC0_GLOUD2.790e-9747.78Cleavage and polyadenylation specificity factor su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 591..628
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 610..648
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 725..742
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 610..631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 555..578
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 694..794
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 864..921
IPR022712Beta-Casp domainSMARTSM01027Beta_Casp_2coord: 376..503
e-value: 2.7E-19
score: 80.1
IPR022712Beta-Casp domainPFAMPF10996Beta-Caspcoord: 376..503
e-value: 5.2E-15
score: 55.7
IPR025069Cleavage and polyadenylation specificity factor 2, C-terminalPFAMPF13299CPSF100_Ccoord: 997..1062
e-value: 2.5E-9
score: 37.6
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeGENE3D3.60.15.10coord: 144..391
e-value: 6.6E-68
score: 230.5
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 143..864
IPR001279Metallo-beta-lactamasePFAMPF16661Lactamase_B_6coord: 154..330
e-value: 2.4E-55
score: 187.0
IPR027075Cleavage and polyadenylation specificity factor subunit 2PANTHERPTHR45922CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2coord: 133..1065
IPR035639CPSF2, metallo-hydrolase domainCDDcd16293CPSF2-like_MBL-foldcoord: 135..337
e-value: 6.30787E-102
score: 316.77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:567896..580900 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.190.1mRNA_P-littoralis_Contig76.190.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig76 567407..582199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig76.190.1 ID=prot_P-littoralis_Contig76.190.1|Name=mRNA_P-littoralis_Contig76.190.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1066bp
MTQPPDPAKLAGDLSQRIINHGDALAGPGKPPLKLLKWALGQLEECARTR
SVPPSNVVDVAMEAIKEEIGVHPLKPPPAAAPAVPAAPAIRRGVGGVGGG
RGNSKGSSSREKKSAAGAAGRGGGSGGRSKGKVVFTPLYGCEEGGTGVGP
VSSILEVGGVTILLDCGWDIQFDTALLEPLREVVKRIDLVLISHPDLEHL
GGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYLSRMHEGNFQAFDLDD
VDTAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTED
NDIVYATAYNHNRERHLRPSALSTLNRPSVLITDAHNSPTGGISRTARET
QLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDEHWQKHRLGSYKLVLL
HNTAFNTSEFAKIGFCFLEWMSEEIGKAFDLQRSNPFELRNVHIMHSLEE
LDDLGNDPKVVLATDMSLDYGFSKALLVRWASGGANTILLTGMGHGSTTA
RELREITRAREIEAETKAAAKKAAAAATAAAGGRGMGMGMGMGMGMGMGM
GVRGGFGMRQEEEGEGEGEEEEEEEEPLVIRVKVPVRVPLAGEELRAFRE
EENRKRRLEQEEEELRRHAAAMEKEQVIADSDEGSDKDDDGDDGAPKKRR
RAIVASLFSKYSKPQHLMFGYYDPQVPTDEYGVKETEPIGWLAAAMQQQN
SEMPAAMQEAGAAMQEGTRGGKNKLQQDSGKRRHRGDFGSGNEEAEAADG
AGGDVDGGQTPPPEQQQEQEQEQQDRQREPVVDALRAGAGEGKESAFFQD
SGAVPTKLEQEYQELEVLCRVVYVDSQGLSDSRSVKHTVVHLAPKMLIVM
GGSARAKRELVLHVRNQLEQQQQQRRPVAKRGKGGRGGRGPGGGGGGGRR
RRRGNGGSDEGGEEEEEEEEECRFVVVDKAMERLPVALDSGAFDVLLHDS
LHTQLKWKQLNNYGVAHMECRVDSRGDTPLLCAKPRGEKVGHPAMFLSLG
NVNIVQLQKSLEKAGVSVKFLSGTLRCEGGVTVSPGKDGKMELEGPLCDA
YFRVREIMYRQYVIV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022712Beta_Casp
IPR025069Cpsf2_C
IPR036866RibonucZ/Hydroxyglut_hydro
IPR001279Metallo-B-lactamas
IPR027075CPSF2
IPR035639CPSF2_MBL