mRNA_P-littoralis_Contig119.55.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI) HSP 1 Score: 452 bits (1163), Expect = 4.360e-134 Identity = 663/873 (75.95%), Postives = 685/873 (78.47%), Query Frame = 3
Query: 1296 MRRKMEAQDYLGVIEAMRAASRVPPR-RGGAE--------REDGGVALGWAPTEETYAVALEACGKVQKRWGFKAALLLIQEMRNAKLSIALVHYRAAVTACSLTRQLAGVLPLLXXXXXXXXXXXXXXXXXXXXXXTAKNVKRALGXXXXXXXXXXXXXXXXXXXXLRLCGLGGCWATGLELMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LIRCLGDSKLWRRAVGILDDMVHDGRVQPDAHCFNAALRACSKAGEWAEAERLVTEMRGQGLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERDSVKPNVFAYNHAMSACVRYDMKYLEAK--NGKHFWHVVQQPPLSISSIHTHASFC--NSFFARKAGISGDWFSNHALLEALANAGKWEVAVSTFEAKKRASDLPPEQSCYKTMLRVCETAGFSRQAVEYLKEMPGAGVPVTLSHFKQALKACETATSRSLVGGSGXXXXXXXXXXXXXXXXXXXTTVG--GRQGWEDAVADAVAAVPVIFELVRETAGLSPDDDCYSSAMRACQNAGMGDATSELMDDLQAQSAVRRMVG 3866
MRRK+EAQDYLGVIEAMRA+SR PPR GGA R DGGV GWAPTEETY +ALEACGKV+KRWGFKA L LIQEMR+ L I+LVHYR AVTAC+LTRQL+GVLPLL A VKRALG LRLCGLGGCWATGLEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LIRCL DS LWRRAVGILDDM+ +GRVQPDAHCFNAA+RACSK GEWAEAERLVT MRGQGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVER VKPN+FAYNHAMSACVR+ Y K +G+ P SFC + +AGI GDW+SNHALLEAL G+WE AV TFE KKR +D PPEQ+CYKTMLRVCE AGF+ QAVEYLKEMP AGVP TLSHFKQALKACE ATSR L GG G XXXXXXXXXXXXXX GR GWE VA AVAAVPVI ELVRE GLSPDDDCYSSAMRACQNAGMGDA SELMDDLQAQSAVRRMVG
Sbjct: 1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGV--GWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGV--------------AADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERGGVKPNLFAYNHAMSACVRFSPPYSRRKELHGEGGGQGAVSP----------TSFCVPANLPVFEAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSXXXXXXXXXXXXXXXXXXXXGRHGWESGVAAAVAAVPVILELVREMTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVG 847
BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE) HSP 1 Score: 260 bits (665), Expect = 3.620e-70 Identity = 235/534 (44.01%), Postives = 264/534 (49.44%), Query Frame = 3
Query: 384 RPPWLMATS-ITRRPTASAVASCVVG---SXXXXXXXXXAVTPCASLAYEVDGDRVLPEGTRDALEQGDVYRALCLLEESGKGGSTTAGPAGNDVDPGALSTATSGASGASRXXXXXXXXXXXXXXXXXXATANVYSDSNSRSPPSLPPSVTVAAGGDISSSMISPRAAHARLIQLLWNAGHEKEALETFDLARARAREAAATPAAAIPPITADVSKMGEEGQEQQQSHDPSRNAKGDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPRVKHGAGIPGLYLDLDRDTCHGIMRRKMEAQDYLGVIEAMRAASRVPPR-RGGAE-------REDGGVALGWAPTEETYAVALEACGKVQKRWGFKAALLLIQEMRNAKLSIALVHYRAAVTACSLTRQLAGVLPLLXXXXXXXXXXXXXXXXXXXXXXTAKNV--------------------------------------------KRALGXXXXXXXXXXXXXXXXXXXXLRLCGLGGCWATGLEL 1817
R PW+MA S P A+ G S ++ PC++LAY+V RVL + RDAL QGDV+RAL LLE+ PA N V+ ++T+ A+ XXXXXXXXXXXXXXXXXX A + SPRAAHARLIQLLW AGHE+EALETFDLA ARAREA P+ + XXXXXXXXXXXXXX +HG G+PGLYL+LD DTCHGIMRRK+EAQDYLGVIE MRA+SRVPPR GGA R DGGV GWAPTEETY +ALEACGKV+KRWGFKAAL LIQEMRNA L I+LVHYR AVTAC+LTRQL+GVLPLL T KNV KRALG LRLCGLGGCWATGLEL
Sbjct: 2 RSPWMMAASPAAEGPAAATXXXXXXGGRNSSSRRLRRQRSIAPCSALAYDVGEKRVLSDDARDALAQGDVFRALLLLEDD---------PACN-VETTEAPSSTATATIIDXXXXXXXXXXXXXXXXXXXXXAGIGP---------------------------SPRAAHARLIQLLWKAGHEREALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXXXXXARPFPNGEQQA--------------------AXXXXXXXXXXXXXXALSATQQLRRTAAAARHGTGVPGLYLELDPDTCHGIMRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAVAKQVGRGDGGV--GWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Match: A0A6H5LFN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFN9_9PHAE) HSP 1 Score: 159 bits (402), Expect = 4.420e-41 Identity = 99/129 (76.74%), Postives = 99/129 (76.74%), Query Frame = 3
Query: 3489 MPGAGVPVTLSHFKQALKACETATSRSLVGGSGXXXXXXXXXXXXXXXXXXXTTVGG--RQGWEDAVADAVAAVPVIFELVRETAGLSPDDDCYSSAMRACQNAGMGDATSELMDDLQAQSAVRRMVGG 3869
MP AGVP TLSHFKQALKACE ATSR L GG G XXXXXXXXXXX R GWE V AVAAVPVI ELVRET GLSPDDDCYSSAMRACQNAGMGDA SELMDDLQAQSAVRRMV G
Sbjct: 1 MPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSASRXXXXXXXXXXXXXXXXXXRHGWESGVTAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVRG 129 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig119.55.3 >prot_P-littoralis_Contig119.55.3 ID=prot_P-littoralis_Contig119.55.3|Name=mRNA_P-littoralis_Contig119.55.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1279bp MDSHGALTTAGAAITAGMGPLALDRVSAAPRLPCAWAHLGSGGSGGGGSSback to top mRNA from alignment at P-littoralis_Contig119:325633..345518+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig119.55.3 ID=mRNA_P-littoralis_Contig119.55.3|Name=mRNA_P-littoralis_Contig119.55.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=19886bp|location=Sequence derived from alignment at P-littoralis_Contig119:325633..345518+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig119:325633..345518+ >mRNA_P-littoralis_Contig119.55.3 ID=mRNA_P-littoralis_Contig119.55.3|Name=mRNA_P-littoralis_Contig119.55.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3837bp|location=Sequence derived from alignment at P-littoralis_Contig119:325633..345518+ (Pylaiella littoralis U1_48)back to top |