prot_P-littoralis_Contig119.55.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig119.55.3
Unique Nameprot_P-littoralis_Contig119.55.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1279
Homology
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BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 4.700e-138
Identity = 663/873 (75.95%), Postives = 685/873 (78.47%), Query Frame = 0 
Query:  389 MRRKMEAQDYLGVIEAMRAASRVPPR-RGGAE--------REDGGVALGWAPTEETYAVALEACGKVQKRWGFKAALLLIQEMRNAKLSIALVHYRAAVTACSLTRQLAGVLPLLXXXXXXXXXXXXXXXXXXXXXXTAKNVKRALGXXXXXXXXXXXXXXXXXXXXLRLCGLGGCWATGLELMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LIRCLGDSKLWRRAVGILDDMVHDGRVQPDAHCFNAALRACSKAGEWAEAERLVTEMRGQGLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERDSVKPNVFAYNHAMSACVRYDMKYLEAK--NGKHFWHVVQQPPLSISSIHTHASFC--NSFFARKAGISGDWFSNHALLEALANAGKWEVAVSTFEAKKRASDLPPEQSCYKTMLRVCETAGFSRQAVEYLKEMPGAGVPVTLSHFKQALKACETATSRSLVGGSGXXXXXXXXXXXXXXXXXXXTTVG--GRQGWEDAVADAVAAVPVIFELVRETAGLSPDDDCYSSAMRACQNAGMGDATSELMDDLQAQSAVRRMVG 1245
            MRRK+EAQDYLGVIEAMRA+SR PPR  GGA         R DGGV  GWAPTEETY +ALEACGKV+KRWGFKA L LIQEMR+  L I+LVHYR AVTAC+LTRQL+GVLPLL                       A  VKRALG                    LRLCGLGGCWATGLEL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LIRCL DS LWRRAVGILDDM+ +GRVQPDAHCFNAA+RACSK GEWAEAERLVT MRGQGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVER  VKPN+FAYNHAMSACVR+   Y   K  +G+        P           SFC   +    +AGI GDW+SNHALLEAL   G+WE AV TFE KKR +D PPEQ+CYKTMLRVCE AGF+ QAVEYLKEMP AGVP TLSHFKQALKACE ATSR L GG G     XXXXXXXXXXXXXX      GR GWE  VA AVAAVPVI ELVRE  GLSPDDDCYSSAMRACQNAGMGDA SELMDDLQAQSAVRRMVG
Sbjct:    1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGV--GWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGV--------------AADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERGGVKPNLFAYNHAMSACVRFSPPYSRRKELHGEGGGQGAVSP----------TSFCVPANLPVFEAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSXXXXXXXXXXXXXXXXXXXXGRHGWESGVAAAVAAVPVILELVREMTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVG 847
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BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 1.260e-70
Identity = 235/534 (44.01%), Postives = 264/534 (49.44%), Query Frame = 0 
Query:   85 RPPWLMATS-ITRRPTASAVASCVVG---SXXXXXXXXXAVTPCASLAYEVDGDRVLPEGTRDALEQGDVYRALCLLEESGKGGSTTAGPAGNDVDPGALSTATSGASGASRXXXXXXXXXXXXXXXXXXATANVYSDSNSRSPPSLPPSVTVAAGGDISSSMISPRAAHARLIQLLWNAGHEKEALETFDLARARAREAAATPAAAIPPITADVSKMGEEGQEQQQSHDPSRNAKGDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPRVKHGAGIPGLYLDLDRDTCHGIMRRKMEAQDYLGVIEAMRAASRVPPR-RGGAE-------REDGGVALGWAPTEETYAVALEACGKVQKRWGFKAALLLIQEMRNAKLSIALVHYRAAVTACSLTRQLAGVLPLLXXXXXXXXXXXXXXXXXXXXXXTAKNV--------------------------------------------KRALGXXXXXXXXXXXXXXXXXXXXLRLCGLGGCWATGLEL 562
            R PW+MA S     P A+       G   S         ++ PC++LAY+V   RVL +  RDAL QGDV+RAL LLE+          PA N V+     ++T+ A+    XXXXXXXXXXXXXXXXXX  A +                             SPRAAHARLIQLLW AGHE+EALETFDLA ARAREA                              P+   +                      XXXXXXXXXXXXXX               +HG G+PGLYL+LD DTCHGIMRRK+EAQDYLGVIE MRA+SRVPPR  GGA        R DGGV  GWAPTEETY +ALEACGKV+KRWGFKAAL LIQEMRNA L I+LVHYR AVTAC+LTRQL+GVLPLL                      T KNV                                            KRALG                    LRLCGLGGCWATGLEL
Sbjct:    2 RSPWMMAASPAAEGPAAATXXXXXXGGRNSSSRRLRRQRSIAPCSALAYDVGEKRVLSDDARDALAQGDVFRALLLLEDD---------PACN-VETTEAPSSTATATIIDXXXXXXXXXXXXXXXXXXXXXAGIGP---------------------------SPRAAHARLIQLLWKAGHEREALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXXXXXARPFPNGEQQA--------------------AXXXXXXXXXXXXXXALSATQQLRRTAAAARHGTGVPGLYLELDPDTCHGIMRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAVAKQVGRGDGGV--GWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
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BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Match: A0A6H5LFN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFN9_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.770e-41
Identity = 99/129 (76.74%), Postives = 99/129 (76.74%), Query Frame = 0 
Query: 1120 MPGAGVPVTLSHFKQALKACETATSRSLVGGSGXXXXXXXXXXXXXXXXXXXTTVGG--RQGWEDAVADAVAAVPVIFELVRETAGLSPDDDCYSSAMRACQNAGMGDATSELMDDLQAQSAVRRMVGG 1246
            MP AGVP TLSHFKQALKACE ATSR L GG G        XXXXXXXXXXX       R GWE  V  AVAAVPVI ELVRET GLSPDDDCYSSAMRACQNAGMGDA SELMDDLQAQSAVRRMV G
Sbjct:    1 MPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSASRXXXXXXXXXXXXXXXXXXRHGWESGVTAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVRG 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.55.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY15_ECTSI4.700e-13875.95PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0B1_9PHAE1.260e-7044.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LFN9_9PHAE2.770e-4176.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 678..726
e-value: 1.8E-13
score: 50.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 577..603
e-value: 0.0021
score: 18.2
coord: 647..675
e-value: 2.2E-5
score: 24.4
coord: 1096..1125
e-value: 0.24
score: 11.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 681..715
e-value: 7.8E-7
score: 26.9
coord: 857..890
e-value: 0.0025
score: 15.8
coord: 821..855
e-value: 2.3E-4
score: 19.1
coord: 647..679
e-value: 2.5E-7
score: 28.5
coord: 893..925
e-value: 2.4E-6
score: 25.3
coord: 541..574
e-value: 1.1E-4
score: 20.2
coord: 927..960
e-value: 6.4E-8
score: 30.3
coord: 578..610
e-value: 3.5E-4
score: 18.5
coord: 716..749
e-value: 3.7E-5
score: 21.6
coord: 786..819
e-value: 1.8E-5
score: 22.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 807..867
e-value: 2.2E-9
score: 37.3
coord: 493..551
e-value: 5.3E-11
score: 42.4
coord: 737..795
e-value: 0.011
score: 15.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 714..748
score: 11.520384
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 925..959
score: 11.969797
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 644..678
score: 12.287675
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 854..888
score: 8.867749
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 679..713
score: 12.364404
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 784..818
score: 10.347525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 574..608
score: 10.303679
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 890..924
score: 11.936913
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 819..853
score: 9.711769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 539..573
score: 9.63504
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 621..754
e-value: 1.6E-32
score: 114.3
coord: 756..868
e-value: 1.2E-25
score: 92.0
coord: 519..620
e-value: 1.9E-22
score: 81.5
coord: 1041..1146
e-value: 1.3E-9
score: 39.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 425..518
e-value: 1.7E-12
score: 49.4
coord: 869..1040
e-value: 1.7E-36
score: 128.2
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 873..988
e-value: 6.0E-11
score: 42.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1149..1177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1241..1278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1149..1178
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 417..754
coord: 572..885
coord: 748..1009
coord: 1053..1236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:325764..343531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.55.3mRNA_P-littoralis_Contig119.55.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig119 325633..345518 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig119.55.3 ID=prot_P-littoralis_Contig119.55.3|Name=mRNA_P-littoralis_Contig119.55.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1279bp
MDSHGALTTAGAAITAGMGPLALDRVSAAPRLPCAWAHLGSGGSGGGGSS
SSSSSSGRNLLVGFAAAAGGGEAKFSVRAAGVQARPPWLMATSITRRPTA
SAVASCVVGSRRRRRSAAAAVTPCASLAYEVDGDRVLPEGTRDALEQGDV
YRALCLLEESGKGGSTTAGPAGNDVDPGALSTATSGASGASRQQQQQQRQ
AGEENGAAASATANVYSDSNSRSPPSLPPSVTVAAGGDISSSMISPRAAH
ARLIQLLWNAGHEKEALETFDLARARAREAAATPAAAIPPITADVSKMGE
EGQEQQQSHDPSRNAKGDNERQQQQRANADANPSANGDRGNGNASKQQQQ
QRRPFDAAAAPPPTPRVKHGAGIPGLYLDLDRDTCHGIMRRKMEAQDYLG
VIEAMRAASRVPPRRGGAEREDGGVALGWAPTEETYAVALEACGKVQKRW
GFKAALLLIQEMRNAKLSIALVHYRAAVTACSLTRQLAGVLPLLEEMRVN
GVAADVATYNAAISACTAKNVKRALGLLQSMRSEGVAPTDITYNVMLRLC
GLGGCWATGLELMGMMEDEGITPSHFHYNSMFMALEKGERWREAADLFRK
MRAGGTKPNAMTYGPLIGVMDRCRKRDMAGAVLKEMLKESPRDTTRAYNL
LLNACAKARQWEHAQRVFEDMKNSDVEPDMVTYNTVINALGRCGRVKEAT
VHLHAMKEQGLSPDVVTFGTLIHACAQSARREAALALFAELVSRGLKPNL
EAYKGCLVSCHKTGHYQQGLDLFDRMSADRVRMDRVVYNTAIACCAQLKL
WRRGVALLDEMREKHVNPDQYSYNNAIYGCVKARQSQQMTMVLARMREDG
LNPDVWTYSNLIRCLGDSKLWRRAVGILDDMVHDGRVQPDAHCFNAALRA
CSKAGEWAEAERLVTEMRGQGLTPDKYTYSSLMTAYGNSGEWEKALSMLE
EIRSAGIKVNSMNYSAAIKACDNGFQWERALELLDRMVERDSVKPNVFAY
NHAMSACVRYDMKYLEAKNGKHFWHVVQQPPLSISSIHTHASFCNSFFAR
KAGISGDWFSNHALLEALANAGKWEVAVSTFEAKKRASDLPPEQSCYKTM
LRVCETAGFSRQAVEYLKEMPGAGVPVTLSHFKQALKACETATSRSLVGG
SGGSGSNGRVGSSSSSSSSSSTTVGGRQGWEDAVADAVAAVPVIFELVRE
TAGLSPDDDCYSSAMRACQNAGMGDATSELMDDLQAQSAVRRMVGGVEEK
EDRRGGGGGGGSGSGSGSVGAINGEGEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long