mRNA_P-littoralis_Contig750.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig750.8.1
Unique NamemRNA_P-littoralis_Contig750.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 573 bits (1476), Expect = 1.170e-193
Identity = 296/334 (88.62%), Postives = 309/334 (92.51%), Query Frame = 2 
Query:   50 MSSSLLERARGFHEDLEIYERSIIEQLESKPRAQKERVAQQHRIANLCDGSTERSIGLHEIYEDKDGSMREEVASMRGQKVMDTFYERLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKGYAGFLSDLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWSSGRAAXXXXXXXEARKGSTAAPRVLDLKKFHDADELRALGMDRLKEALEALGLKCGGTLEQRADRLFSVKGKEPEDIDNKLRAKGKKGGKGKSNGVAPGHGADMDANGKA 1051
            MSSSLLERARGFHEDLEIYER II+QLE+KPR QKERVAQQHRIANLCDGSTERS GLHEIYED DGSMREEVASMRGQKVMDTFY+RLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLH MFVRWVNLPQCKDKQLDYSQFLQALGRF+DIPEQEKLRGK YAGFL+DLREYLGGFLTRTQPLVDL+EVLGDTDSSFEEAWEAGTLPGW+SGRAAXXXXXXX       AAPRVLDLKKFHDADELRALGMDRLKEAL+A+GLKCGGTLEQRADRLFSVKGK+PE+ID KL+AKGKK         APGHGAD +ANG A
Sbjct:    1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEXXXXXXXXAPGHGADPNANGPA 334
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 1.890e-108
Identity = 168/184 (91.30%), Postives = 169/184 (91.85%), Query Frame = 1 
Query: 1120 KVKALLEVQTDTLESTKRQVDKKQXXXXXXXXXXXXXEEQGALPEFNEEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            KVKALLEVQTDTLESTKRQVDKK              EEQGALPEFNEEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDI+LIQDARDLYAKIKDSLDKEQWN EDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:   25 KVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 208
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 350 bits (897), Expect = 3.000e-107
Identity = 175/306 (57.19%), Postives = 222/306 (72.55%), Query Frame = 2 
Query:   59 SLLERARGFHEDLEIYERSIIEQLESKPRAQKERVAQQHRIANLCDGSTERSIGLHEIYEDKDGSMREEVASMRGQKVMDTFYERLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKGYAGFLSDLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWSSGRAAXXXXXXXEARKGSTAAPRVLDLKKFHDADELRALGMDRLKEALEALGLKCGGTLEQRADRLFSVKGKEPEDIDNKLRAKG 976
            SLLERAR FHED+E YE +II++LE+KP+  KERV QQHR+ANL   +  RS  L  IYEDKD SM++EVA+MRG+  +  FY+R K +WSYH  +P LPV  GPN++ E E KV FSGEEL+GK FDLHD++ RWVN PQC DK+LDY  +L  L    D+PE+ K R KGYAG+++DL  YL GFL RTQPLVD +E++ + ++ F++AWEAG + GW   R +        A  G   A R LDL  +H A++L  LG+DRLKEALEALGLKCGGTL+QRA+RL +VKGK+P +ID KL AKG
Sbjct:    2 SLLERARAFHEDIETYEMAIIKELEAKPKTNKERVYQQHRVANLLSQAVARSKELDAIYEDKDDSMKQEVAAMRGRDALKNFYDRAKSSWSYHARYPDLPVNTGPNIDEEKEPKVTFSGEELFGKHFDLHDLYARWVNSPQCSDKRLDYGAYLAGLAALGDVPERAK-RSKGYAGYVADLEAYLRGFLARTQPLVDADEIVKEAEAEFDKAWEAGRVKGWP--RVSKAAPHKAAAPGGGLTA-RHLDLSLYHAAEDLMPLGLDRLKEALEALGLKCGGTLQQRAERLMAVKGKKPSEIDPKLLAKG 303
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A7S2V2Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q3_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.100e-73
Identity = 134/199 (67.34%), Postives = 153/199 (76.88%), Query Frame = 1 
Query: 1093 RKQLAALETKVKALLEVQTDTLESTKRQVDKKQXXXXXXXXXXXXXEEQGALPEFNEE------EXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            RK++A +E ++ AL E   D + +T++QV++KQ       XXXXXX   G      +E       XXXX +EGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICGD+SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDI LI+DA  L+ KIKD L  E WNA+  EEYED EGNVLNRRTYEDLARQGL+
Sbjct:  116 RKEIALMEFEISALYEQMKDVVMNTRKQVERKQTKTMEERXXXXXXXXXGTGVAAEDELAXXXXXXXXXXDEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGDYSYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIEDATALFDKIKDQLAGEMWNADMEEEYEDSEGNVLNRRTYEDLARQGLL 314
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI)

HSP 1 Score: 254 bits (648), Expect = 6.990e-73
Identity = 123/193 (63.73%), Postives = 147/193 (76.17%), Query Frame = 1 
Query: 1093 RKQLAALETKVKALLEVQTDTLESTKRQVDKKQXXXXXXXXXXXXXEEQGALPEFNEEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            RK+ A LE  +++L  +  + + +T+R  +K+Q             EE G LP+  EE     D+EGP+YNPLNLPLGWDGKPIP+WLYKLHGLGVEFKCEICG+ SY GRR FDRHFQEWRHAHGMRCLG+PNTKHFHDI LI+DA  LY+KI+DSL KEQ+  +  EE+ED EGNVLNRRTYEDLARQGL+
Sbjct:  207 RKKTALLEYLIQSLCSLMAEIVTATRRHAEKQQTRTLEEKLALLEEEEYGTLPDV-EEADDDEDDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGVPNTKHFHDITLIEDALALYSKIRDSLKKEQFVEDVEEEFEDSEGNVLNRRTYEDLARQGLL 398
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A6V1NE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE02_HETAK)

HSP 1 Score: 236 bits (602), Expect = 8.780e-70
Identity = 104/129 (80.62%), Postives = 113/129 (87.60%), Query Frame = 1 
Query: 1285 EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCE+CG  SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDI  I+DA+ LYAK+K  LD + W+    EEYED EGNVLNRRTYEDLARQGL+
Sbjct:   16 DEGPVYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEVCGGASYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITTIEDAKALYAKLKAGLDGDAWDGAVEEEYEDSEGNVLNRRTYEDLARQGLL 144
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.430e-69
Identity = 126/201 (62.69%), Postives = 150/201 (74.63%), Query Frame = 1 
Query: 1078 EKEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKQXXXXXXXXXXXXXEEQGALPEFNEEEXXXXD---EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            E  + R  +A  E ++  L +   D L++ +R VDKKQ             EE GAL   ++EEXXXX    +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHA+GMRCL IPNTKHFHDI LI+DA +LY KIKD L +EQ++A   EE+ED EG+VLNRRT+EDLARQGL+
Sbjct:  310 EASDSRHDVARAEFRISFLCDQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXXXXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRRAFDRHFQEWRHAYGMRCLKIPNTKHFHDITLIEDATNLYDKIKDQLKQEQFDANQEEEFEDSEGHVLNRRTFEDLARQGLL 510
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A7S2W2V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V2_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.900e-69
Identity = 138/311 (44.37%), Postives = 186/311 (59.81%), Query Frame = 2 
Query:   50 MSSSLLERARGFHEDLEIYERSIIEQLESKPRAQKERVAQQHRIANLCDGSTERSIGLHEIYEDKDGSMREEVASMRGQKVMDTFYERLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHDMFVRWVNLPQCKDKQLDYSQFLQALGRFQDIPEQEKLRGKGYAGFLSDLREYLGGFLTRTQPLVDLNEVLGDTDSSFEEAWEAGTLPGWSSGRAAXXXXXXXEARKGSTAAPRVLDLKKFHDADELRALGMDRLKEALEALGLKCGGTLEQRADRLFSVKGKEPEDIDNKLRAKGKK 982
            MSS+LLE+AR   E  E YE++I EQL SKP+  K++V QQH IANL     ++S    E+ +D DGS +EE+ +M+G     +FYE LK+T  Y+   P +      +LEA+ E    FSGEE++GK+ DLH +  R  N+ Q    +  Y  +L A   F  +P   K+ G  YA +L DL +YL  F  R QPLVD   +  +  ++F+EAWE GT+PGWS+G A         A   +TAA R +D+   H A +L ALG+ RLKE LEALG+KCGG+L  RA+RLFSVKG   +DI   L AK  K
Sbjct:    1 MSSTLLEQARQALEYSEAYEKAIGEQLSSKPKTTKQQVWQQHHIANLMTCIKKQSGTALEVVKDGDGSFKEELETMKGANAFGSFYESLKQTREYYMRFPNIKPQQALSLEADMECTTVFSGEEVFGKYLDLHALHERSCNMKQFGPTE--YLDYLAAFSDFSKVPSGAKM-GAAYAEYLKDLLDYLESFFQRAQPLVDFASISSERSTAFQEAWEKGTVPGWSAGSAGTEA-----ASTSNTAAKRPVDMSSMHSAQDLEALGLQRLKEGLEALGMKCGGSLSDRAERLFSVKGVAQKDIPKNLLAKAAK 303
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: K3X6A8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6A8_GLOUD)

HSP 1 Score: 243 bits (621), Expect = 1.390e-67
Identity = 118/200 (59.00%), Postives = 144/200 (72.00%), Query Frame = 1 
Query: 1078 EKEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKQXXXXXXXXXXXXXEEQGALPEFNEEEXXXX--DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            E +E+RK LA  E  ++ + E+ T+ + +T   ++ KQ             EE+G+  + + E       D+E P YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHA GMRCL IPNTKHFHDI L++DA  LY K+KD +D E WN E+ EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  325 EAQEKRKALAFDEVLIRRMCELLTEVIHATISYLELKQTRTHDELLAEIAEEEEGSFSDVDVENANPEGDDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAFGMRCLKIPNTKHFHDITLMRDAIQLYEKLKDQIDAENWNPENEEEFEDSEGNVLNRKTYEDLARQGLL 524
[Close]
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Match: A0A6G0X0B1_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0B1_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.410e-67
Identity = 118/198 (59.60%), Postives = 144/198 (72.73%), Query Frame = 1 
Query: 1081 KEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKQXXXXXXXXXXXXXEEQGALPEFN-EEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 1671
            K+ RRK LA LE +VK +  + T+ + +T   ++ KQ             EE+G L +   + E    DEE P YNPLNLPLGWDGKPIPYWLYKLHGLG+EFKCEICG+ SY GRR+FDRHFQ+WRHA GMRCLGIPNTKHFHDI L+ DA  LY K+K+ L+ E +N ++ EE+ED EGNV NR+TYEDLARQGL+
Sbjct:  301 KDARRKALAMLEVQVKTMASLLTEVIHATISFLELKQTRTPEELQAEILEEEEGGLSDVEVDNEPANDDEEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGIEFKCEICGNHSYWGRRDFDRHFQQWRHAFGMRCLGIPNTKHFHDITLMADAIALYEKLKEQLEIETFNKDNEEEFEDSEGNVFNRKTYEDLARQGLL 498
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig750.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU5_ECTSI1.170e-19388.62Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
D7G993_ECTSI1.890e-10891.30Matrin-type domain-containing protein n=1 Tax=Ecto... [more]
A0A836CE40_9STRA3.000e-10757.19Matrin-type domain-containing protein n=1 Tax=Trib... [more]
A0A7S2V2Q3_9STRA2.100e-7367.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812TNG2_SYMMI6.990e-7363.73SF3A3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A6V1NE02_HETAK8.780e-7080.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HV93_9STRA1.430e-6962.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2W2V2_9STRA1.900e-6944.37Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K3X6A8_GLOUD1.390e-6759.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0X0B1_9STRA1.410e-6759.60C2H2-type domain-containing protein n=1 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig750contigP-littoralis_Contig750:34529..48870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUU5
Preferred nameSF3A3
PFAMsDUF3449,PRP9_N,SF3A3,SF3a60_bindingd,Telomere_Sde2_2,zf-C2H2_jaz,zf-met
Model size2561
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
Exons13
Evalue7.43e-38
EggNOG OGsCOG5188@1|root,KOG2636@2759|Eukaryota
EC4.2.1.2,6.5.1.1
DescriptionmRNA splicing, via spliceosome
Cds size204
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.8817973-UTR-P-littoralis_Contig750:34528..354151680791553.8817973-UTR-P-littoralis_Contig750:34528..35415Pylaiella littoralis U1_48UTRP-littoralis_Contig750 34529..35415 -
1680791553.9211974-UTR-P-littoralis_Contig750:36094..361371680791553.9211974-UTR-P-littoralis_Contig750:36094..36137Pylaiella littoralis U1_48UTRP-littoralis_Contig750 36095..36137 -
1680791553.9337974-UTR-P-littoralis_Contig750:36549..367131680791553.9337974-UTR-P-littoralis_Contig750:36549..36713Pylaiella littoralis U1_48UTRP-littoralis_Contig750 36550..36713 -
1680791553.943306-UTR-P-littoralis_Contig750:38763..389041680791553.943306-UTR-P-littoralis_Contig750:38763..38904Pylaiella littoralis U1_48UTRP-littoralis_Contig750 38764..38904 -
1680791553.9593341-UTR-P-littoralis_Contig750:40166..403211680791553.9593341-UTR-P-littoralis_Contig750:40166..40321Pylaiella littoralis U1_48UTRP-littoralis_Contig750 40167..40321 -
1680791553.973876-UTR-P-littoralis_Contig750:41368..415281680791553.973876-UTR-P-littoralis_Contig750:41368..41528Pylaiella littoralis U1_48UTRP-littoralis_Contig750 41369..41528 -
1680791553.9886398-UTR-P-littoralis_Contig750:42530..426821680791553.9886398-UTR-P-littoralis_Contig750:42530..42682Pylaiella littoralis U1_48UTRP-littoralis_Contig750 42531..42682 -
1680791554.0009885-UTR-P-littoralis_Contig750:43409..435051680791554.0009885-UTR-P-littoralis_Contig750:43409..43505Pylaiella littoralis U1_48UTRP-littoralis_Contig750 43410..43505 -
1680791554.0145066-UTR-P-littoralis_Contig750:43821..439471680791554.0145066-UTR-P-littoralis_Contig750:43821..43947Pylaiella littoralis U1_48UTRP-littoralis_Contig750 43822..43947 -
1680791554.0306735-UTR-P-littoralis_Contig750:46684..467591680791554.0306735-UTR-P-littoralis_Contig750:46684..46759Pylaiella littoralis U1_48UTRP-littoralis_Contig750 46685..46759 -
1680791554.0449462-UTR-P-littoralis_Contig750:46988..470811680791554.0449462-UTR-P-littoralis_Contig750:46988..47081Pylaiella littoralis U1_48UTRP-littoralis_Contig750 46989..47081 -
1680791554.0550487-UTR-P-littoralis_Contig750:47472..475831680791554.0550487-UTR-P-littoralis_Contig750:47472..47583Pylaiella littoralis U1_48UTRP-littoralis_Contig750 47473..47583 -
1680791554.0692341-UTR-P-littoralis_Contig750:48716..488701680791554.0692341-UTR-P-littoralis_Contig750:48716..48870Pylaiella littoralis U1_48UTRP-littoralis_Contig750 48717..48870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.8970482-CDS-P-littoralis_Contig750:35415..355621680791553.8970482-CDS-P-littoralis_Contig750:35415..35562Pylaiella littoralis U1_48CDSP-littoralis_Contig750 35416..35562 -
1680791553.9109046-CDS-P-littoralis_Contig750:36037..360941680791553.9109046-CDS-P-littoralis_Contig750:36037..36094Pylaiella littoralis U1_48CDSP-littoralis_Contig750 36038..36094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig750.8.1prot_P-littoralis_Contig750.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig750 35416..36094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig750.8.1

>prot_P-littoralis_Contig750.8.1 ID=prot_P-littoralis_Contig750.8.1|Name=mRNA_P-littoralis_Contig750.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEG
NVLNRRTYEDLARQGLM*
back to top

mRNA from alignment at P-littoralis_Contig750:34529..48870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig750.8.1 ID=mRNA_P-littoralis_Contig750.8.1|Name=mRNA_P-littoralis_Contig750.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=14342bp|location=Sequence derived from alignment at P-littoralis_Contig750:34529..48870- (Pylaiella littoralis U1_48)
TCGAGAAAGCTAGGTCGGGGGTTCGCAGGTTTCTTGTTGATCACGAGTCA
TGTCTTCCTCATTGCTTGAGCGAGCGCGAGGGTTTCACGAAGACCTCGAG
ATCTACGAGCGCTCGATCATCGAGCAGCTGGAGAGCAAGCCCCGCGCCCA
GAAGGTGAGAGAGAAAGGATGTGACCACGGCTATAAATAGTTGACTCCGC
ATGCTTAGATTCACAGCTTTTGCTGCTGTTGAGTCGGTGGGGGTGTATTG
ACCTTGTATGCCTCATGGCTCGGTCTGGGCGGATGGGGTCGGTCTGTTCT
TACCCTGAGGATCTAGTGGAACGTAAATGCTGCATAACGAGTACTCCGTA
TATAGCTCCGAAAACTTCCCCGCTGTTGTTGTCGGCGTCGCCCCCAAACC
TCCCAACCCACAACAAGCGCCCGTTCCCGTGTGCGTCTGCTTGCTGGTGT
TGCGGTGGATCGTCGCTCTATATTCCCTGCAGTCTGCTGCCTTTCACACA
ATGTACAAAACTGCTGCCGCCAATTCCGCCCTACGATCATTGTCCTTTCC
AGCGCCTGGTTGTGTTTTTTTTTTTTGTGAACACCCCACCTCCTTCAGAT
TGCTGGTTAGCCCCAGGTATACTGCTGCACGTGCCACGTGCAAACCTTCC
TCGTGGGACAACCGACTTCGCAGCTTTTTTTGTGTGTTGTTGGTAGCCAA
ACTGTTGCGCACAGCAGGCGGTGGCACGTTAGCCTCCATCATTTTTTTGT
GTGTCGCTCTGCTGTTGCAATATTCAATGAAGGCATCGTCACAAAGCTCT
GGGCTTAGACTTCCTTGTACGCATTAAACATTTACTAGCGCAGAAACGTT
CATTTTTTACCCATGCAGACGCAGCAGTAGCAGCAGCAGCAGAATGTGCC
GACACCCATGCAGCAACACCACATGATAACCTTGGTTTCGATTGTTGACC
GCAATTGCACAATGCGCACGGACCTGCGCAGAGCACGAGCTCATCAGAAA
CGGTGCACGACAAAGGCGTGTCGCTGCATGTGTTTATACTACTGTTTTGT
AAGCCTAGTACACTCTTTGGAATGGCCCGCCCGTTTGCACACAAATCTCT
CCATTTCTGCACAGCAGTCCAGCCTTATAGGAGGTCACGGGTGTCCCTTG
TGTGCGAGATGCACCACACCAGTAAAGTCCAAGTTTCACCCCACGTTCGT
GTCTTGAAGACCTAGGTTTCTCAAACCCCAACGTTTTGATGTCCTGATGA
CCGCCCCTCCCGCCTTCGTTCGTCTGCGTGAAATCAGGAGCGCGTGGCAC
AACAGCACCGCATAGCCAACCTCTGCGACGGCTCAACCGAGCGCAGCATT
GGTCTCCATGAGATTTATGAAGACAAAGACGGGTCCATGAGGGAAGAGGT
ACGATGACGAGCGGTCACAGAACGATAGCAACGCTGCTGCTGAACTACCC
CTCTGCCTCAACTGCGTCGGCGAGGCGTTCGGTTCCCGTCGCCGTCTCTC
GAATTCTCTCTCTCTCCCTCTCTCGTTCCCGTACTCTGCCTACTTCTCTC
TCGTAGCTCCATTTCTCTTTTTTTTTCCCTTCTGTCGCTCTCAGCATACG
TTTCCACTGCTTTGGTAAGCCCCATCGTCTTCTCTTAAGATAGTTTTGTT
TCGGTACTGCTGCACACACAGCATCATCACGATACCAGGCACTCGTTTCA
CTACCAAGCGGTGACCTTCGGGGGTGTTATGCACTGTGCAATTTCTATGG
TGAGCCATTTTTTTCAGGACCATTTTTTTCTCGACACAGGTGGCGTCCAT
GCGGGGCCAGAAGGTAATGGACACTTTCTACGAACGGTTAAAAGAAACTT
GGAGCTACCACACGCACCACCCTGGGCTACCGGTGAGAGGAAGGGGTTGG
GCACAGTGACGAGTGTACCCATCTATTCGAGGGATGGTTGATGGTACTGC
TCTATACTGATGCCATGTGTTGAGGCTGGCCGTGTGTCCCAGCAAGATGG
AAAAAGTACGAAGCACTTGTCATGCACGCATCTCAAAAGTCTACCCATGC
CTACACGCCCGCTTTGATTTGACGTTGTTGGCTCTGGGTCGACCATTTTC
CTTATATACAGGTGACTTTTGGGCCGAACTTGGAGGCCGAGACGGAGGTG
AAGGTGCAATTCTCCGGAGAAGAGCTCTACGGCAAGGTGAGCGACTGCCA
TGGCCATGACGCGAGGGAGAATGGGTGGGGGGGGGAGGGAGCGCCGCGGC
AAGCATGACATGTAAGGAATGAGATGAAACGAGGATGCGGAGGGACGACC
CTACGCGGAGCTTTTGGGTAACTTACAGGTGGTGCTCGTTGTGTACGTGT
TGATGAGAGATCGGCGTTGCTCTCTCTCTCGTAACGGGCACTGTCCGCTG
CGGCATTCACAGGAAAAGCTGATGTTATTTGGCGAGGTGTGGCACGAGTT
ATTCCCAAGCGCATTGCAGTGCTGCATTGGAAACGTGTCGTACATGTTCA
ATATGTTGGGTATCATGCATCACCCGATGATTCACTTTTGACCGTTTTTC
GTACATGACCCTTCCTGTAGCGATATCTCGCTCTGCGCTCATTGTTCTCA
AACTGTAATCCGTCCAATGAAGTAAGTAAACGTCCTTCGTAGTCCAATGG
TTAGGATATATCGCTCTCACCGATGAGACCCGGGTTCAATTCCCGGCGAG
GGAGATTCTTTTGTCGTCTCGCTCCGACTTTTTTTTATGGGAAAAGGACA
CAACAGGGTGCACCCTGGTCATTTTGCGACTCAACAGGGTGCATACCTTT
CCCGGGCGTAAAAAGAACCAAGCTGATTGGTCAAACCTCGAAAACATCCT
GTTGAGGCGGAAAATGACCAGGGTGCACCCCGCGGGGGCTACCTTTCTTC
AAAACTACACCCTGATTTTTTTAAAGCACCCTGTTGTGTCGGTAAATGAG
ACCCCTCCACCGGATATTCCTCCGGCAGGAATCACTTTCCGCACCCGCCA
AAGGGCACCAAATATGAGATCTTCCACCGCCGGACATACAATGGTGAATA
CCATGAACGGCACGACGGACCTACCGCATACCCCTCCACATCGACTCTTC
AGGCTCCAAACATACCATGGCACACTGCTTCTGTGCCAACAGATCAGAGT
GCCGTTGTGTAGCTACACTGCTGTACTCTTTATGTACAATGTACGCAGAA
ACAGAAACCAAACAATACTTGCGATATGATACTCTGCATTATATTTCCGG
TAATCACAATGCGCGTGGAAGTGGAAATCGATTAATTCGTGAGTAAACAA
AATTCGATCGTACCATCGACGAGGAAGGAGGGATCGCTGTCCCCTTTCTC
GCGATATAGGCTCAACCAAAACAAGGCAAGCACCGCAGAGGGAAGTGGAG
AAAAAAAAGAAAAAAAAGAAAAAAACTCCTGTGTTGACTTCCCCCTGTGT
GACCCCAGTTGGAGCGTCGACCTACCCGAAAGGTGCAGAGTGGCGTCCAA
TTAAAGGGATGGCGACACACACAACACATAGGTACTCCCTAAATCATTCA
CGATCGGATACGAACCCAGTTCTTCTTTCGGCGCGCCCACTCTCCCACGA
CAGCAGTTTGTTGCAAAAGGGCGCCCGCGTGCCCTTCAGACGTGACGATA
TGTTGACATGCCAGAGGGTTGTGGGCTTGCAACAGAGTGTTCGCAATGAA
AGGTTCGGGAAAAATACAGAAGGTGGTGTTGCGCCTTCCGTGTGTTCCTG
TATAAAGTAAAGGGACAACGTGGGTAAAAGGTGGGTGTGTGGTTCCCTCT
TTGTTCAGTGCATCGATATTGTGTGTTTGCTCTCTGCTTACGACGTCTAC
TTGCTGCGTCTGCCCTGCTGTGAATCGCGTGTCCTGTCACCCCACTTGCC
GTCCCTTCCATACCTTCTTTGTGTGGTTGTGTGGCTTCTTTGTCTTCCTT
CTGCGTTCCTCCTCTTCTTGAGTGTGTTGTTATACATTGGCCTCTATACA
TGGTATATATACTCTTACTTCGTATATGAGTATTTGAAGCAGGGCCAACA
AATGTGCTCTGTTTCGGGCTGGTGTGTCTGCTCCGTTTGTTGTCGGCGGA
TCTGCAGTTTGTTTGCTGGCAACGCACTCTGATCTGTTGGTACAGAAGCA
GTGTGCCATGGTATGTTTGGAGCCTGAAGAGTCGATGTGGAGGGGTATGC
GGTAGGTCCGTCGTGCCGTTCATGGTATTCACTATTGTATGTCCGGCGGT
GGAAGATCTCATATTTGGTGCCCTTTGGCGGGTGCGGAAAGTGATTCCTG
CCGGAGGAATATCCGGTGGAGGGGTCTCATTTACCGACACAACAGGGTGC
TTTAAAAAATCAGGGTGTAGTTTTGAAGAAAAGTAGCCTCCGCGGGGTGC
ACCCTGGTCATTTTCCGCCTCAACAGGATGTTTTCGAGGTTTGACCAATC
AGCTTGGTTCTTTTTACGCTCGGGAAAAGTATGCACCCTGTTAAGTCGCA
AAATGACCAGGGTGCACCCTGTTGTGTCGTTTTCCCTTTTTTTATCCACC
TCCGCGTTGCTACTTTTGTTGAACGTGCGGTTTTTTCGTATATCCCTCTC
CCTCTCTCCCTCGCTTCGCTCATAACGTTACTTCGGGCATTACTCTTGAT
GTTCTGCAACTCGCAAAAGGAGGAACTAGGTGTTGATTTTTTTTACTTTT
TGAATTTATTGGTATTAAATGGTGTTTCAAGAACTCGATATTTCGTGTGT
GTTCTCGAGATAAATACTGACTGACGATGGCGACAAGGTTGAGGTTGAGG
TTGTCCGGTTTGTCGTCAAGGCTCGTTTCTTCTTGTTCCTTTCGCCCGCC
ACGTTTTGATTACGATGTCATTGTACGCCGCACGTCGTTCGACTGATTGA
TCGTTGTCGTGGCGTGCGAGCAGTTTTTCGACCTGCACGATATGTTTGTG
CGGTGGGTCAACCTTCCGCAGTGCAAGGACAAGCAGCTCGACTACTCGCA
GTTCCTGCAGGCTTTGGGGAGGTTCCAGGACATCCCGGAGCAGGAAAAAG
TGCGTTTGCGCAGCGGTTGGCTATGGCGTTTGATTCGAAGAGGTTGTGCC
ACAAGGCCGTGGTTTGTTGTTATTTTTATCGTTTGATTGGCGTATTGTTC
ATGGTTTTTTTTTGTCGGCACGACTCATTTTGTCGTTGTTCTTGTCGATG
TAGCATGTGTCGTCGTCGTTGTCGCTCCTTCTTTGTACTCACGAAGCACT
GTATTTATCTTGTTTTTGTTGGTTTTCCGATTGCGGTAAAGCAGCAATGA
AATTCCACCGAACGTTGCGTCTGACACGTTCATTTTTCGCGTTACGTCTT
ACGTTCCGAATGCAGCTCCGCGGAAAGGGCTACGCGGGGTTTTTGTCCGA
CCTCAGGGAGTACCTGGGCGGGTTCCTCACTCGCACGCAGCCCCTCGTCG
ATCTCAACGAGGTAAAAAATGTGAATCATGCGGGCTCACTTTTTCATGAA
GGGTGTCTTGCGTTGGAATGTGAGTCGCCGCCTTTTTTTTCCATCGCCCA
TAGGCGGTAAGCTTTGTAATGTATATGTGTGTGTGTGCGAGCATGCCGCC
AATTCTGATGGCTGGTTGTTGCACTTAGAGGTGCGTGGGCAGACTGAGCG
GTGGAACCCCCGCTGTGTACGCAGTGTGAGCGTTTTGCGTTGTCGTTTTT
TTATAGCTCGGCTGTCCTCGTTGGATCAAGTGTGTCGCTGTCTTTACGAT
GGGTCATTCTCTCTGCACGCCTTTTTGTTGACAAGTTCCTATCTATCGTG
GGCTCGCGTTACATGTGCTCCTCCTCCCTCAAGAGTTTTTTTCGTTCGAG
ATTACTAGTCCTTTCCTATCGTGGGGTTCGCGTCTGAAGTGCTCCTCCGC
TTTCCTCTTATTTTTTCTGTGTTCGATGTAACTGCTGTCATCTCGGTCTA
ACCTGGCTTGCAGTTCCTTAGGATATCTTCTGAAGTCTGTTTTTGGAGCG
TCACTCCCTTGTCTTCTCCTGATCTGTTGATGTTTCAACTGGTGTCGGGA
GGCCGACAACAACATCTCATTCCCATAACTAATTGTTGTTGAATTCTACT
TCACTAGTATTTTTTCCGGCTTCCAACTTTTTTTTCCGGCGATCAGATAT
TTAGTTTTTCTCTGTGATCGGTTGGCATGTTTGTCCAGGTGTTGGGTGAC
ACTGACAGCTCTTTCGAGGAGGCCTGGGAGGCGGGAACGTTACCGGGGTG
GTCCTCTGGGCGAGCGGCGGCAGCGGCGGCAGCAGCCGCAGAAGCCAGGA
AAGGAAGCACGGCGGCCCCCCGTGTGCTGGACTTGAAAAAGTGAGCTTTG
GGGTGCCGGTGTTGCTTTGGTGCTGCTGCTGTTGGTGTTGTTGCGAGAGG
TGGGAGTACATGTGGCAAGCGTAGTTGGGGTGGTACGTGGTGGTGTGGTG
GTGCTATTGGTATTTTTAAGATTAGTGGTGGCAAAAAAGTTGATGCACCC
AATTCACACAGCTGTCCATGTGTCCCGTATGCCTTTGATTTGTGGGCAGA
GGACAAGAGACTTAACGTTCCTTGTTTTGCGCATGGTATGAGGTTAGGTT
CCTTATGCAATGTTCGGCACAAATTGCGATGTCATAGGTATTATCGTAGT
CAACCCGTACGTGGCTTTGCTATAGCCTGCTTAACTTCACCGCTACAGCA
AAGTACTTGGTTTATGTTTTCTAGTTGTGGTCTACTTGTTCTCAACCGCA
AATCAATGTCAACATTACAGTAGAAACAAAGGATCGAGGGCAGATAAACG
AAATCTCTCCGCGTTCAAAACGAGACGAGAAGGACTCGCGGCAGATCCGC
CTCACGGTCGCCTCACGGTCAGCGGCGTGTTCATTGTTGGTGTGACGTTA
GCGGTGTTTTTGTCGGTAGGTGTCAGTGCCAATGGCGAAGGAACGGCTTG
TCATCACGGCGCGTTGTCGTGCCCACGTAACGCTGTCGCACTAGCGTGCA
TCACGTTGTGATTGTCACGTGGCGATGTTGCTACAATCTCACATCACGTC
GTCCTGCTTGCGACATGGCACTGCTCGGCGCGGTTGTTCGTGTGTCGCGT
GACGTTTTTGCATGCTCTGAACGACCGTGGTGTTGCGCCCAAGGCGGTCC
TGTGCATTTTTTTGTACACACAATCGCTCGACGCTGCTGTTACATGTCTG
ATGACGGTGTTGCTCTGCTCGCGTGCCGTTGCCGTCCGTATGGTTTTTGG
TTTTCAGTCGGGTGACCTTGCTGTTTGTTGTGCCAATGAAACTCAAATAC
ATGAAGGCGTTGTTCACCTCTTTTCTTTTTTCTCGCTACAAGGTTTCACG
ACGCGGACGAGCTGCGCGCTTTGGGCATGGACCGCTTGAAGGAAGCGCTT
GAGGCCCTCGGTCTCAAGTGCGGCGGGACCCTGGAGCAACGAGCCGACCG
GTTGTTTTCTGTCAAGGGAAAAGAGCCGGAGGATATAGACAACAAGCTTA
GGGTGAGTTTACGCTCCGGTGAAGCTGAGATGTTTTTGGTCTGCCACTTG
CAAGAAGCCGCACAGCGGCGAAGCCGCAGTTCGGTGAAACCGCAGCTTAT
TCTCGGGAGTACGGGAAGTCAACAAGGGTATAAATATCGGGTAACGTTGA
TGAGACGGCATCATTCGTGGGATCTGGTTTGCCGTGTGCCGCAACTCGAG
CTTATTTTTACTTCTGTGGCGGGTGTGGGTTAGCGTGTTGGTCGACGGTG
TCGTGGTCATTTGCTATCACAAGGTCGACCGGTTGTTTTGAAAGTGAAGA
AGGAGCAGGGAACAGCCAAAGACAGAAAATAAAAAACGTATCGCGTTTGT
GGTTGCGCCGCACGTCGAAAAACACTCGAGCTGTACAACATGATTTGACA
CAACGAACAATAGGCGAGAGGTGTCGATGTAGAGATATGTCGGCCAGGAG
CTGTTTTTTTGTGGGGGGAGGTCAGCAGGTGTCAAGCCTTTTTTTTACGG
TGGGTGCTTCGAACGACGGTTCACTTGCTAAAAAGGGTCGAAGTTGCGTA
TTGCTTCTCGGGGGGGGGGTGCACGGTCATCCGTCCGTCTCTAGCTCTTC
AGGGTGTTTTTACCATCTTGTTCTCGCGAGTCCAATCTTCCGAACAAGCT
ATACCCGGGCCTTGAACGTCCGTCTCCGCTGCTTTGCGCTGCCTTAGTCT
TTGTTCGTCTCGTTGAGGGGCTTTGTTCGTCTCGTTGAGGGGCCATGCAC
TGCTCGTTCGATCGAGCCGCGTGGTGTTGTCACGAGAATTAAAAACTTGG
TCTCACGGTGTCGGTGCTGATACATGGCTTCTCTGTCTTGTCTTGTTGGT
GGGGTGTGAGTGGAGCATTTATTTCAATGCGCATTTCGTGTGCCTCTGTC
TCTGTGTGGCGTGAATGATGTCTCTTGGGTCGGTGTGGATACTGCCCTTC
ATTTCCACGCGGAGGATGCTCTCGCGGTCATGGTAGGGAATGGGATAGGC
TCGGCTCACTGACCCCTCCTGTGCTGCGCAATGAAACTCTTGGTTCCAGG
CGAAAGGGAAGAAGGGAGGCAAAGGGAAGAGCAACGGGGTGGCGCCGGGT
CACGGTGCGGACATGGACGCTAACGGAAAGGCTGTGGAGACAGGGGCGGG
GGGTGGGGGGAGAAGGAAGAGCGGCGCAAACAGCTCGCTGCCTTAGAGAC
AAAGGTATGAATGACAAAAAATGGCATGGCGCACGTGCAATACCTTTTAT
TTTATGCATTGGTTCTGCGCACATGCACGTGAAATATGAATGTGTGTTCG
CTTATCACCAATCGTTGAGTCTCTGCCTTCAGAGACGAAGTTATGACACA
ACAGGATGGCTTACGTGTATTTACTGTTCATTTCATATATATTTGGTTCT
GTACATAGGCGCACTTGAAATGCATGTTTGTGTTTGTGTGTATGGGGTAA
AATGACCAGTTAAACTCGTGACCTTGGCATGTGTTGTTGTTGTCGTTTCT
GTTGTTGGTTCTCACATTAGCTCGCCACCAAAGTCTAGCCCATAGTCACA
AACCAGACACATGTCGGGCTAGGAGGAAAACAAAAAATAAAGAAGGGAAA
AAGTGATGGGTCACCCAAACAAAAATCAGAGATGGTACTGTACCGTTGGG
GTACCTTCTCTGGTGGCCGAAGGACAAAAAACATAGAAATACAAACTCGA
AAACGAAATTGAAAACAAACAGGACCAAGAAACCATACTTGTGGTGACCC
ACCAGAGCACAGAAGCACGACAAAAACCACGGCGAACCAGAGCCCAGAGC
CCAGCAAAGCAAATATTATCGCTGTCTGGTAAAACGATTAATATTATTGC
TTTCTGATTGTATGACGATGAAAAATAGACATCGGGTGACCAAACAATAG
AAGCAGCTAGAACGAGAGAACGAGAAGACGGAAGACGAAGGGGGGGACAA
TGTAGAACTCCTTGGCCAATACCTCTTGGCGACAGACCTTTTGGGTAAGA
TTAATTTGTGCCAACAGCTCCTCGTGGTTTGCGCTTTTCACATAAACGTA
ATATACGAAGTCATTTTTTTTTCCGAGAATGGTTTGCTGTTACGATAGTA
GTGTGATACTTGAAAAAAAATCAGGTGGAAGTGCGACCGGATGTGATATC
TGCGGCCGAGTCATGGCGCGACAGTCCCGCGTATTAATGAAATTAGTTTT
TGCAGTTTTTTTGTGGTGGTTGCTGTTTGTGGTCCCAGGCAGTACATCTT
CCTTCTCACCCCATGTATGGAACGCTTTCTCACTTGGATGTACACATTGT
GAGGGAATGAACAACACTGTTATGTAAATGGCGCACGTTCGTGTCCGAGT
AGGATTAGGCCATATCCTACCGTCTATTTTTGAACGTCGTGCCACTATTG
TCTACAACCGCGGGCCTCACCGTAGCTAGTCCTTGGCGTGTGTCCGTTTT
TTTTCGGCGATTACAGGTGAAAGCCCTGCTGGAGGTGCAGACGGACACGT
TGGAGTCCACGAAGCGACAGGTGGACAAGAAGCAGACCAGGACGGTAGAG
GAACGGGACCAGGAGATACAGGAGGAGGAGCAGGGGGCTCTCCCGGAGTT
CAATGAGGTCGGTGCCCTTGACTCCCACGAATAATGCCCCTATCCAGTGT
TTTGGTGACAGCCCTTCGGTTCTAGGTAAACTTCTCCTCCTACTTCGTGA
GCGTCGCGTCTGTGATCTCAGCTCCTTCGTCTTTGGTGAAGATTTCTTTT
ATTTCGTGAGCGTTGCGTCTGTGAGTTCGCCTCATTTGTTTTTGGTGATA
GTCTCCTCCTATTTCGTCAGCGTTACGCCTGTGACCTCAGCTTCTTTTTT
TTTATGAAAGATTCCTGTCACTTTCTAAGCGTTGCGTCTGTGACCTCAGC
TCCGTCGATTTTGTAAATAAGCTCCTGCCATTCACTAAGCGTTGCGTCGG
TGACATCCTCTCACAGTCGGCTGCGGGTAGTTTACCTCGATTTTGGTTTT
GCATTGTGTGTTGTCTCATCTGTCTATTTCCGGCAGGAGATAATTGTTTT
CATTTTTTTGTGTGTGTGTCGTGCTCGTCCCGTTATTTTTAAAAAAACTT
ACCAAAACATCAATGTGTTCGCCTCTCTCCAGACAAGGATCTGGAGCAGA
TATTGCAACGAACACAAAGAGTGAAATACGTTTACCAGTGTTTCTATGCT
CATCAGATAATGTACCGTTGCAGCTCCCCTGAGGGATCGGGCTCAACAAG
ACAATTTGGTGGTCGTCTTGTGTGACACACGTTACATCATGCGTTGAGTG
TTTACGATCTATATTTGTGCTGTTTGCATCGTCCTTGGCACAGTTATGGT
GGTGATTTGATGGATCTGGCTATGCAACTACGTGCAGCAGTAGATTTTAC
GTTCCTATAGATAAGAACACCGTTTTTAATTCCACAAATATATGCTATCT
ACCCATCATAGAGGCGCGAGAGATGAGCCGCAATATTATGTTTCCTCCCC
CTGAAGTCGATTAAGGGATCTCGGCCCAGAAGACATTTTTTTCGTGATTA
TAAAAAAGTGCCCCAAGTCTCAACCCAAGGCGAAAACGCAGGTTGCTCAG
ACTAAACGTTCCTATCGGGAGTTGCGCTAATGGACACATGAAATGAGCAG
AATACACCATTTAGCGGTGACCTGCGTGCTGGCACGCTCATATCTGCTGC
TGGAACCGAGATATCGGAGGTCGAAGTTATGTTTCAGGCAGTCCAGAAAT
TGTCCGCATTTCAGCCAGAAACCGAACAACTGCCACTGCCGTACTCGTCG
CCACGGGCCTCGCTGTGGGTCTACAGCAGTAGCTAGTGGTCTACATCAGT
AAGTCCTTACCCTCGCTACTTCTGTCGATCGGTATTTCAAGAGACGAGGC
CCGTTGTGACGAGGAAAGCAGCGAGCATGGACAAGATGATGTTCGGGATC
TGATTGAGATTCGGACGATTTCTGAACTGCCTGAAACATAACTTCGACCT
CCGATATCTCGGTCCCAGCAGCAGATCTGAGCGTGCCAGCACGCAGGTCA
CCGCTCCATGGTGTATTCTGCTGATTTCATGTGTCCATTAGCGCAACTCC
CGATAAGAACGCTTGTTCCAAGCAACCTGGGTTATCGTCTTGGATTGAGA
ATTGAGCACTTTCTTGATAAAAAAAAACAAACTTCTGGACAGATCCCTAG
TCAAGCATCTGAGCAGTAAAGGCGAGCGCACCAGTCACGCAAGGATCGAC
ACGATCAAAGCACTGGCCAAACCACCATTCGAGGCATTGAACGTCCTTCC
GACGTACCGATCATCGCTGTGGACAAACGATGACAAACGTTGGGGCTCAC
CGACCTCCACGTCGACCGAAACCAACAACCAACCAGTCAGTTAGCGTTTG
GACTTTCACCGGCTGCTAACTCGACCAAACCAACAAACAAACAGCCAATC
AATCGATCAACGTTTAGGCATCGACCGCCACGGTGACCAAAACCGAAACT
CACAAGCAACCAAGCAATGAAATCAATCGACGTTCGGACTTTGTTTCGAC
CACCACTTTGACCAATCACCAAATCAAGCAGCGAATGCTTCGTCCGCCGG
ACCGACTCTCATCGATCACCTCCATGTCCCCGTTCGCGCTCACGTCTCGC
GTCTTAGGAGGAAGACGAAGAGAGCGACGAGGAAGGGCCGATCTACAACC
CCCTCAACCTTCCCCTTGGGTGGGACGGCAAGCCGATCCCCTACTGGCTC
TACAAGCTGCACGGGCTGGGAGTGGAGTTCAAGTGCGAGATCTGCGGCGA
CTTCAGCTACAAGGGCCGGAGGTGGGGCTCTGTCGCCACACCACACATGT
GTTTTGAGTCAGTCAGTCGCGCTTCGTGTTTAGTGTGTGCCGGTGCGAGG
GTGTATTTTGTTGTTTCCGTCGTGAAGGTGCTGTTGCTCGCTGGCCGCTG
CGGGTTGAAATCCAAAGGTGAGCTCGTCAACTGGGGTTTCCCCGGGGGGG
GGGGGGGAGCCGTGGTACGGCGTGGATAACAAGCAACGCGCAAGCCCGCC
TGGGGAAGTTTTTTTTGCGGCGACCTCGGGTGCCAAGGTGCAAGAGGGTC
GGTGGGTGGGGGTCCTTGCACACTCGTCTGGGTTGTGTAACGTTTGTGTG
AGTGTGGGTGTGTTTTATGCGAAAGGTTGAGACCAGACATTTGTGATATT
TTTCTCCATTGCTTTCGTTTTGACGTGCCGCAGGAATTTTGACCGGCACT
TCCAGGAGTGGCGTCACGCGCACGGCATGCGCTGCTTAGGCATCCCGAAC
ACGAAGCACTTCCACGACATCATTCTTATCCAGGTGGGAAAGCGAAATCG
ACGACGGCGCAACGTATTCAACTCAGGGCGCGCTCTTGGTTATATTTGAC
AGCGTTTGTATTGTACCGCCGTCCTTGCTCCATTGGTTTTCTTGTTCCTC
AGGGCAGGACAGGGGTGTGTTTAGCCAAAATCAGAGGAAGAGAGAGCGAA
TTCGAAAACGTTGAGAAACTAAATCACCTAAACGTAATAACGCCTCCACG
ACCGTCGTCGCAAACTAGGTAAAATTACAAAATTACCTGCTGTACTGAAG
TTGAAACATTTTTTTTGTTTTGAGTTCCTGCGCCGCACTTTTTTTTTTTA
ACTTGCCATCCGAAATGCACACGCACCCGCGACCCACTCGACGCAATATC
GGTCTCGAAACCTTCCGAACACCTCGATCGATGATGAGATATCAACCTCA
ACGTGCACCACGGGAAACGAATACTTCGTACCCCTGTATGATTTTTTTTT
TTGTACAGGATGCGAGAGACCTTTACGCGAAGATCAAGGACTCGTTGGAC
AAGGAGCAGTGGAATGCCGAGGACAACGAGGAGTACGAAGACGGAGAGGG
AAACGTGCTCAACAGACGCACGTACGAGGACCTGGCCCGCCAAGGCCTCA
TGTAATACAATTAGGGGGAGGTACAGGATAGGACGGGGATCGGGAGATGG
GAGGGTGCTGCTGGCCCTGCTGCTCATGTGTGCTATTATACTCTCAAAGG
GAGGGTACTGTTGGTGCGAGAAAACATTTTTATTTTGCGTGTGTGGTACG
ATGTAACACTGTTACACTTATGGTGCGCGACGGGAGAGGATGGTGATACC
ACTTTACAGCAGGTGCAGCTGCAGCGAAGTTTACCCGTAAAAGCAGTGAG
GGAGGTCAGGGTTGCTCATCTTGTTTCGTATCCGCGACTGGTGTGGTGAA
AAAGTAGCCGAGACGGTGTGGCTGCGCGAGTTCACCTGTGACGTGAGTGA
TGCACGCCGCAAGTGTCGTATTCGTCGTCGAGGAGCGGCCAACATCTCCA
GCGCGAGTAGAACGAATCCGCCTCCTATAGTGCTGCTGGTGCCAGCACGA
GCCTGCGTGTGGGCCACCACCGCGCCACCCGTGTGTTTCGACGACTTCAC
GCCCAGACGCTTTTGTGATGTTCTGGACGTTACATCATCAGGCTCCCCCG
ATTCTCGTACTCGTAGCGCAAGTCTCAATGAGCTCATCGTCGTTACCCAA
ACGCAAAAATGAAGGGCGTTTGATGAGTTTGTGTTTTCATCTTGTGGGCT
CTGTTTGCGTTCGTTCCATGCGCAGCAGCTGCGAAAGGCAGAGGTAATGC
CCTCGACATGTCTGGACTGCTTGTTGGTGGTAGAAGGGTCCACGGGCTCA
TTGACGTGGACGCTTCTGTAAATTGAAAACGCATACGAACACTACCGAAG
AGATTGTGATCGCGCCCACGAATCGGGAAATACGGAGTTTGCGCTAACGC
TCACGCACATCGTACTGGCTCCAGGCGACGCCGCACACCCAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig750:34529..48870-

>mRNA_P-littoralis_Contig750.8.1 ID=mRNA_P-littoralis_Contig750.8.1|Name=mRNA_P-littoralis_Contig750.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig750:34529..48870- (Pylaiella littoralis U1_48)
ATGCGCTGCTTAGGCATCCCGAACACGAAGCACTTCCACGACATCATTCT
TATCCAGGATGCGAGAGACCTTTACGCGAAGATCAAGGACTCGTTGGACA
AGGAGCAGTGGAATGCCGAGGACAACGAGGAGTACGAAGACGGAGAGGGA
AACGTGCTCAACAGACGCACGTACGAGGACCTGGCCCGCCAAGGCCTCAT
GTAA
back to top