mRNA_P-littoralis_Contig75.103.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.103.2
Unique NamemRNA_P-littoralis_Contig75.103.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: D8LF00_ECTSI (Isochorismatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF00_ECTSI)

HSP 1 Score: 471 bits (1212), Expect = 4.990e-156
Identity = 217/274 (79.20%), Postives = 246/274 (89.78%), Query Frame = 3
Query:  183 MEEYSMRRLSDLSAALETEASLGGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFE 1004
            ME+Y+MRRLS+LSA LE E+ LGGT L+IVDPQ DFHEGG+LA+ GA DDAERIA  + +    IDE+VVTLDSHHR+DIAHPMFWTDG G GS+PAPFTLI SEDIQ GTW+PV+ EHKEHC+EYTR+LE+GGKFTLCVWPEHCLIGTPGH+V+PV+N+AIQEWAVA++  VTYVHKGQHPLTEHYSCFAAEVPV GDEAN+KGR +LAKLCARD V+VCGQASSHCVNFSARDLAAAWKRTT G L +++ARRRMGSLVLLKDGMSPV GFE
Sbjct:    1 MEDYNMRRLSNLSAVLEAESGLGGTALLIVDPQADFHEGGALAIQGASDDAERIAQLVTDQSEHIDEIVVTLDSHHRMDIAHPMFWTDGRGGGSYPAPFTLIKSEDIQNGTWLPVEEEHKEHCIEYTRKLEEGGKFTLCVWPEHCLIGTPGHAVNPVINKAIQEWAVAKKRSVTYVHKGQHPLTEHYSCFAAEVPVAGDEANEKGRILLAKLCARDVVVVCGQASSHCVNFSARDLAAAWKRTTAGGLNEDVARRRMGSLVLLKDGMSPVTGFE 274          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A835YMN5_9STRA (Isochorismatase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN5_9STRA)

HSP 1 Score: 281 bits (718), Expect = 8.950e-84
Identity = 144/256 (56.25%), Postives = 168/256 (65.62%), Query Frame = 3
Query:  237 EASLGGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFE 1004
            EA   G  L+I+DPQVDFH GGSLAV GA  DAERIA F+  H  DID++VVTLDSHHR DI+ P FW   SG G+ PAPFT ITSE ++ G W PV  EH+ HC  Y   LE  G+FT  VWPEHCLIGT G +V P +N A+Q+WA+ARR  V YV KG +PLTEH+S FAAEVP+  D       A++A+L  R RV VCGQA SHCVN S RDL   W            A R    +VLL+DG SPV GFE
Sbjct:    7 EAKPEGAVLLIIDPQVDFHPGGSLAVAGADADAERIAAFLRRHEQDIDDVVVTLDSHHRFDISQPGFWV--SGEGNPPAPFTAITSEQVKLGLWKPVLEEHQAHCQRYCEALEARGRFTHVVWPEHCLIGTVGQTVEPRINAALQDWALARRRAVHYVAKGANPLTEHFSAFAAEVPLDSDPGTALNAALVARLRRRARVYVCGQALSHCVNRSVRDLVEHW------------APRSAADIVLLRDGASPVAGFE 248          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A2E7CJX7_9PROT (Isochorismatase domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2E7CJX7_9PROT)

HSP 1 Score: 258 bits (659), Expect = 2.160e-75
Identity = 125/248 (50.40%), Postives = 162/248 (65.32%), Query Frame = 3
Query:  261 LMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFE 1004
            L I+DPQ DFH GGSLAVPG+ +D+ RIA+FI ++ + IDE+ V+LDSHHR+ IAH +FW D +G   HP PFTLI  +D+  G W PV  +  E+   YT+ LE  G+F +C+WPEHCLIGT GH+V PV+N+A+QEW   +   V Y+HKG + LTE YS  AAEVP+Q D        +L KL   D +L+CG+A SHCVN++ RDLAA W +                +LVLL D  S VPGFE
Sbjct:   12 LFIIDPQNDFHPGGSLAVPGSNEDSGRIANFIVDNASLIDEIYVSLDSHHRIHIAHGVFWNDQNGE--HPPPFTLIKHQDVISGKWTPVNPDLLEYAKHYTKSLEDKGRFIVCIWPEHCLIGTAGHAVVPVLNDALQEWVKIKMKPVEYIHKGMNCLTEMYSALAAEVPLQDDPTTSMNLELLKKLNTADNILICGEAKSHCVNYTMRDLAAHWTK-------------EQSALVLLSDCTSAVPGFE 244          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A6G0XHW0_9STRA (Isochorismatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHW0_9STRA)

HSP 1 Score: 257 bits (656), Expect = 7.720e-75
Identity = 129/265 (48.68%), Postives = 164/265 (61.89%), Query Frame = 3
Query:  222 AALETEASLGGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFEVGGQ 1016
            A +E   S GG TL+I+DPQ DFH GGSLA+P A +DA R A FI NHLNDID+L++TLDSH RL IAH +FWT+  G    P PFTLITSED+  G W     E + +  EYT+ LE+GG+FTLC+WPEHC+IGTPG ++   ++EA  EW    R  + YVHKG +  TEHYS   A+V +  D +      ++A+L +   V VCGQA SHCVNF+ RDL + W                 G + +L D  S V GFE  GQ
Sbjct:    9 AHVERSHSQGGVTLLIIDPQRDFHPGGSLAIPSADEDAGRTAAFIRNHLNDIDQLIITLDSHQRLHIAHSVFWTNEKGES--PPPFTLITSEDVANGKWKARSPEVQVYVYEYTKALEQGGRFTLCIWPEHCIIGTPGQAIVDPIHEAALEWTAHSRKPIKYVHKGSNCFTEHYSALRADVELPHDPSTSLDHKLIAQLKSSSIVAVCGQALSHCVNFTVRDLVSLWPE---------------GRVAVLVDCSSSVVGFESSGQ 256          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A7S3PLJ4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLJ4_9STRA)

HSP 1 Score: 249 bits (635), Expect = 8.520e-72
Identity = 124/253 (49.01%), Postives = 160/253 (63.24%), Query Frame = 3
Query:  249 GGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDE-ANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFE 1004
            GG  L+++DPQ DFH GGSLA+  A  DAERI+  I  +L  ID + VTLDSH +  IAHP+FW +      HP PFT +T +D++ G W P + EH+   L Y  +LE+ G F L +WPEHCLIGTPGH V  V+ EA+Q W  A+   V+Y+ KG +  TEHYS   AEV V G+E   D  R +L +L   D+VL+CGQASSHCVNF+ RD+A  W   T  +L+          L +L+D MSPVPGFE
Sbjct:   19 GGVGLLLIDPQNDFHPGGSLAIADADKDAERISKLIKENLEKIDHIYVTLDSHQKYHIAHPLFWVNEQKV--HPTPFTTVTKKDVENGKWKPTRAEHRIWGLHYVSELERKGNFALTIWPEHCLIGTPGHCVRGVIQEALQAWEDAKEKAVSYIVKGNNSKTEHYSAIKAEVIVPGEEDLTDLNRTLLDELSRHDKVLICGQASSHCVNFTVRDIADNW---TDSSLK---------KLYVLRDAMSPVPGFE 257          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A067BU91_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BU91_SAPPC)

HSP 1 Score: 248 bits (633), Expect = 2.100e-71
Identity = 129/266 (48.50%), Postives = 159/266 (59.77%), Query Frame = 3
Query:  222 AALETEAS--LGGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFEVGG 1013
            AA+E +A    GG  L I+DPQVDFH GGSLA+P A DDAER A FI  H+  I +LV+TLDSH RL IAH +FW +  G+   PAPFTLITSED+  G W P   E + +  EYT+ LE GG+FTLC+WPEHC+IGT G ++   V+ A  EW+   R  +TYVHKG +  TEHYS   A+V +  D        ++  L     V VCGQA SHCVNF+ RDL   W               R   + +L D  SPVPGFE  G
Sbjct:    9 AAIEADAKDGHGGLALFIIDPQVDFHPGGSLAIPTANDDAERTAAFIRKHMTAITQLVITLDSHQRLHIAHGVFWKNVDGAS--PAPFTLITSEDVANGKWSPRAPELQAYAYEYTKALEAGGRFTLCIWPEHCIIGTKGQAIVDAVHTAALEWSRVSRRPITYVHKGSNCYTEHYSALRADVELPHDPETSLNVGLIDALKTAGVVAVCGQALSHCVNFTVRDLVEHWPAG------------RASDIAILTDCTSPVPGFEASG 260          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A662YD27_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YD27_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.250e-71
Identity = 121/266 (45.49%), Postives = 161/266 (60.53%), Query Frame = 3
Query:  219 SAALETEASLGGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFEVGGQ 1016
            +A L      GG  L+++D QVDFH GGSLA+P A +DA RI  FI+ H   + ++V+TLDSH R  IAH +FW + +G    PAPFTLIT+E ++ G W P     KE+ L YT+ LE  GKFTLC+WPEHCL+G+PGH++ P V  A  EW       + YV KG +  TEHYS   AE  +  D A    ++++  L   D+V+VCG+A SHCVN++ RDL   W +             R+G LV+L D  SPVPGFE  G+
Sbjct:    7 AAKLAGAIPTGGLCLLVIDQQVDFHPGGSLAIPTANEDAARITSFISKHAAKLQQIVLTLDSHQRYHIAHGIFWENAAGES--PAPFTLITAESVETGVWKPRNPSLKEYVLAYTKSLEASGKFTLCIWPEHCLVGSPGHNIVPNVLAAALEWTKQSLRPIQYVMKGSNSFTEHYSALKAEFELPYDPATSLNQSLIDSLKLADKVIVCGEAISHCVNYTVRDLVDGWPK------------ERVGDLVILTDCASPVPGFEEAGE 258          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: W2Q9Q4_PHYPN (Isochorismatase domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2Q9Q4_PHYPN)

HSP 1 Score: 246 bits (627), Expect = 1.040e-70
Identity = 127/270 (47.04%), Postives = 163/270 (60.37%), Query Frame = 3
Query:  213 DLSAALETEASL--GGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFEVGGQ 1016
            +LS A +   ++  GG  L+++D QVDFH GGSLA+P A +DA RIA FI  H + + +LV+TLDSH R  IAH +FW +  G    P PFTLIT+ED+  G W P     KE+ L YT  LE  GKFTLC+WPEHCLIG+PGH++ P V  A  EW  A    V Y+ KG +  TEHYS   AE  +  D      +A++  L   D+V+VCG+A SHCVN++ RDLA AW               R+  LV+L D  SPVPGFE  G+
Sbjct:    4 ELSQAAQVAGAIPSGGLCLLVIDQQVDFHPGGSLAIPTANEDAARIAAFIRQHSDKLKQLVLTLDSHQRYHIAHGIFWENEEGKS--PDPFTLITAEDVAAGVWRPRDPSLKEYVLAYTTALEASGKFTLCIWPEHCLIGSPGHNIVPNVLAAAMEWTKASLKPVQYIMKGSNSFTEHYSALKAEFELSYDPTTSLNQALVDTLKLADKVVVCGEAISHCVNYTVRDLADAWPA------------ERIHDLVILTDCASPVPGFEEAGE 259          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A6A3TN12_9STRA (Isochorismatase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TN12_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.930e-70
Identity = 123/256 (48.05%), Postives = 155/256 (60.55%), Query Frame = 3
Query:  249 GGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFEVGGQ 1016
            GG  L+++D QVDFH GGSLA+P A +DA RIA FI  H   + +LV+TLDSH R  IAH +FW +  G    P PFTLIT++D+  G W P     K + L YT  LE  GKFTLC+WPEHCLIG+PGH++ P V+ A  EW       V YV KG +  TEHYS   AE  +  D A    +A++  L   D+V+VCG+A SHCVN++ RDL AAW +             R   LV+L D  SPVPGFE  G+
Sbjct:   17 GGLCLLVIDQQVDFHPGGSLAIPTANEDAARIAAFITKHARQLSQLVLTLDSHQRYHIAHGVFWENAEGQS--PEPFTLITAKDVAAGVWRPRDASLKSYVLAYTTALEASGKFTLCIWPEHCLIGSPGHNIVPNVHAAALEWTKCSLKPVQYVMKGCNSFTEHYSALKAEFELPYDPATSLNQALVDSLKLADKVVVCGEAVSHCVNYTVRDLVAAWPQ------------HRCKDLVILTDCASPVPGFEKAGE 258          
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Match: A0A3M6VUV5_9STRA (Isochorismatase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUV5_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.230e-70
Identity = 123/266 (46.24%), Postives = 159/266 (59.77%), Query Frame = 3
Query:  219 SAALETEASLGGTTLMIVDPQVDFHEGGSLAVPGALDDAERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFTLITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTPGHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDEANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALEDEIARRRMGSLVLLKDGMSPVPGFEVGGQ 1016
            +AA+      GG  L+++D QVDFH GGSLA+P A +DA RIA FI  H   + +LV+TLDSH R  IAH +FW +  G    P PFTLIT++D+  G W P     KE+ L YT  LE  GKFTLC+WPEHCLIG+PGH++ P V+ A  EW       V YV KG +  TEHYS   AE  +  D      ++++  L   D+V+VCG+A SHCVN++ RDL AAW +             R   LV+L D  SPVPG+E  G+
Sbjct:   13 AAAMAGAIPAGGLCLLVIDQQVDFHPGGSLAIPTANEDAARIATFIQKHSRKLKQLVLTLDSHQRYHIAHGIFWENAEGKS--PKPFTLITAKDVAAGLWKPRDPNLKEYVLAYTSALEASGKFTLCIWPEHCLIGSPGHNIVPNVHAAAMEWTKLSLKPVQYVMKGANSFTEHYSALKAEFELPYDPTTSLNQSLVESLKLADKVVVCGEAISHCVNYTVRDLVAAWPKD------------RRSDLVILTDCSSPVPGYEKAGE 264          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.103.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF00_ECTSI4.990e-15679.20Isochorismatase domain-containing protein n=2 Tax=... [more]
A0A835YMN5_9STRA8.950e-8456.25Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A2E7CJX7_9PROT2.160e-7550.40Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A6G0XHW0_9STRA7.720e-7548.68Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A7S3PLJ4_9STRA8.520e-7249.01Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A067BU91_SAPPC2.100e-7148.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A662YD27_9STRA3.250e-7145.49Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2Q9Q4_PHYPN1.040e-7047.04Isochorismatase domain-containing protein n=12 Tax... [more]
A0A6A3TN12_9STRA1.930e-7048.05Isochorismatase domain-containing protein n=3 Tax=... [more]
A0A3M6VUV5_9STRA3.230e-7046.24Isochorismatase domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:339862..345764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LF00
PFAMsIsochorismatase
Model size2965
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.03e-165
EggNOG OGsCOG1335@1|root,2QW5A@2759|Eukaryota
Ec32 ortholog descriptionIsochorismatase-like
Ec32 orthologEc-21_006180.1
Descriptionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
Cds size975
COG categoryQ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.103.2prot_P-littoralis_Contig75.103.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 340044..343956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791549.0439887-UTR-P-littoralis_Contig75:339861..3400431680791549.0439887-UTR-P-littoralis_Contig75:339861..340043Pylaiella littoralis U1_48UTRP-littoralis_Contig75 339862..340043 +
1680791549.1471052-UTR-P-littoralis_Contig75:343956..3457641680791549.1471052-UTR-P-littoralis_Contig75:343956..345764Pylaiella littoralis U1_48UTRP-littoralis_Contig75 343957..345764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791549.0586176-CDS-P-littoralis_Contig75:340043..3402711680791549.0586176-CDS-P-littoralis_Contig75:340043..340271Pylaiella littoralis U1_48CDSP-littoralis_Contig75 340044..340271 +
1680791549.080226-CDS-P-littoralis_Contig75:340719..3408511680791549.080226-CDS-P-littoralis_Contig75:340719..340851Pylaiella littoralis U1_48CDSP-littoralis_Contig75 340720..340851 +
1680791549.0917268-CDS-P-littoralis_Contig75:342218..3422961680791549.0917268-CDS-P-littoralis_Contig75:342218..342296Pylaiella littoralis U1_48CDSP-littoralis_Contig75 342219..342296 +
1680791549.1106079-CDS-P-littoralis_Contig75:342532..3425751680791549.1106079-CDS-P-littoralis_Contig75:342532..342575Pylaiella littoralis U1_48CDSP-littoralis_Contig75 342533..342575 +
1680791549.1245255-CDS-P-littoralis_Contig75:342977..3430591680791549.1245255-CDS-P-littoralis_Contig75:342977..343059Pylaiella littoralis U1_48CDSP-littoralis_Contig75 342978..343059 +
1680791549.1350307-CDS-P-littoralis_Contig75:343544..3439561680791549.1350307-CDS-P-littoralis_Contig75:343544..343956Pylaiella littoralis U1_48CDSP-littoralis_Contig75 343545..343956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.103.2

>prot_P-littoralis_Contig75.103.2 ID=prot_P-littoralis_Contig75.103.2|Name=mRNA_P-littoralis_Contig75.103.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=325bp
MEEYSMRRLSDLSAALETEASLGGTTLMIVDPQVDFHEGGSLAVPGALDD
AERIAHFIANHLNDIDELVVTLDSHHRLDIAHPMFWTDGSGSGSHPAPFT
LITSEDIQQGTWVPVQGEHKEHCLEYTRQLEKGGKFTLCVWPEHCLIGTP
GHSVHPVVNEAIQEWAVARRTGVTYVHKGQHPLTEHYSCFAAEVPVQGDE
ANDKGRAVLAKLCARDRVLVCGQASSHCVNFSARDLAAAWKRTTTGALED
EIARRRMGSLVLLKDGMSPVPGFEVGGQNCFSSCESHFMILWLTSFISLP
LMLVGLSSETRMAPTRTHNTHARE*
back to top

mRNA from alignment at P-littoralis_Contig75:339862..345764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.103.2 ID=mRNA_P-littoralis_Contig75.103.2|Name=mRNA_P-littoralis_Contig75.103.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5903bp|location=Sequence derived from alignment at P-littoralis_Contig75:339862..345764+ (Pylaiella littoralis U1_48)
CGCACGTGCACACTGTTGTGCAGTGCGACTGGCCCAAGCCCTCTCTCTGC AACAAAGTACGTGGTACCTGAAATCTTTCACGGACTACCATTACCACAGA CGCTGTTGTGCACGGACGTCTTTACTCCCTCTCGACTTGAAGGCTCATCA CAAAAAACACCTGAAAAACACTCCATATCGTCATGGAAGAATACAGCATG CGGAGGCTCTCAGACCTCTCTGCCGCTCTTGAGACGGAGGCCAGCCTAGG AGGCACTACTCTAATGATCGTAGACCCTCAGGTGGATTTTCACGAGGGAG GGTCGCTCGCCGTTCCTGGTGCACTTGATGATGCGGAGCGCATCGCGCAT TTCATCGCGAATCACCTCAACGACATCGATGAACTGGTCGTAACGCTGGA CTCTCATCATGTGAGCTCTCGCATGTTCGTATCATATGATACGAGCACAA GTTTATGAAGTTGAAGAACTTCAGATTCGCCCTACTTGCTTTCTGCACAG CGTATGATACTCAAGACGCCTTTTCTTGCACGAGTAGTACTGCTGTAAAC AAAGCGCAGCAGAAGGGCCCCTCGCGTTTGTTGTTTGTGTTGGCTTGGTG TTGGGGGGCGCATAGTGCGGTTGTGGTAGAACCCAAAACACTTGGGAGAG TCCTGGTGCGCACAGAGTGCAAAAAAGAGCCAGCGCGGGCGCGATACCAA GCACCCAATGTTTCAGTCTTTGATCGCTTTGAGAGCGCAGTGCCAAAAGT CTGCAGCAGCAGGGATGCAACATGCGATATACCTGGTACGAAGTGCCTCG TACCATATACGGAGTACATGCGTTGCTCTGTTTTGTCGCTGCGTTTCACT ACGTACAGCGTCTGGACATCGCTCACCCCATGTTCTGGACGGACGGCAGC GGCAGCGGCTCCCACCCCGCGCCTTTCACCCTGATTACGTCAGAGGACAT CCAACAAGGGACTTGGGTACCTGTACAGGGCGAACACAAGGTAACAGCAG ATCGCTTTTAATTGATACTGGCGTGTCATATATATGATACCCCAACCACA CTACAATTCAGATGAAGTCACGTGCAGAATTGTATTCGATACACCTTGGA ACCCTTCTTTCTCACGCTGTGTTGCATTGTGATGCTGCATGTGGCTGCTG TCGTCGCTGTCGCCGTTAACTTATTATTGAAAAACAGCAAACCTTGTTAC ACGGTCACCCCGGTGGTCTAGTGGTTCCCGCGATCAACCCACTGCCAGTA ACGACGCAGGTTCGATTATCTCTGGGTTATCCTGCAAATTTACAGTGGAA AGCGATTCACTCGTGAGTAAATAGAGTGAAGGGATTGCTGAACCCGACTC GCATCAAAAAACAACGACAAGTACCGCAGGAGGATTGGCGTGGGCAATAA AAATAAATGAAGAATGAAGAAGCTTGTGTGTGACCTTCCTCCTGTGTGAC CCCGGCTGGAGCACCTATTTCATACCGAAAGGTGTAGACCGGTGCCCATA ACAAACGGGATGACACACACACACCATTCTTGCGCTGCCTGAAACTCTCG CTGGGCCGGTGAACGGAGTAGCAAGCCCGATGTCCATTTTTCTCGGCACC TTTGACAACTAAATTCGGTTCCTTTGTCACTTTTTTATTTTTTATTTCAT TTTTGACTTTGCTCTGGACCAGGTTTCTATTCTCTTGTACTATTTTTGTG GCGTTGTGTGATATTTCGGGGCCCGTTTTGTTTTGCCGGAGTTTCCATGT CGTACCTTTAGTGGATTGATGGGATCTTCCGCGTACTATATACCCATCCC ATCCCGGCACCTCCAAAAAAAAATTACCACCCCGTCCCGTCCAAATTTTT CCCGATAGAACTACCGTCCCGTCCCGTCCCGGCAAGAATTCAAACCACCA TACTTTGCTACTCCGGCGCTACCGGCGAAATAGAAAATTTTGCATCCACC CGAATTTTCCCCCCGTCCCAGCAATTTATTATTTTAGATGTCCATCTCTA GCCTTGAGTATACCTCTTTTGGGCAAGCAGCCTGTGACCACGGAAATCGT CCTTGATCGGAAGAGTACGGACATTAGAAGGTACTGAGGAGAAATCGGAA TGCTTTTTTTATGTGAATACAACACACACACCATTCTCTGACAACAGCAG TTAGGTGTGTCTTGAGCCCTATGGAGCAACAGACAAAATCTTGAAATTTC CATATTCAGAAAGAGGTGTATAACATCATTATTTCAGGTTGCAGGCCACT GACAATTGTAACGAAAGTGCCCGTTCCCCGTAGCTACGATGGATACACAT AGGAGACGTGAGGCTTCGATCTCACCCGATTCTCCCGTCGGTACCGACTG TCAACAGGAGCACTGCCTCGAGTACACCAGACAGCTGGAAAAGGGGGGAA AATTTACGCTGTGTGTCTGGCCTGAGCACTGTCTGGTGAGTACGATCCAC CAGAACAGCCGCAGGAAAGGGCTATGCTTGACTAGAGGTGGTGGTTGACG TGTCTATTTAATTTAACAACACAATTGCGCTCTTTGCCGTCGCGTTATTG TCGCACGTACGCGCGAAACAGCCGTCACAAAGCCGTTTTCACGAACCCGC GCATGCATTCACCTCGACCAGCTCGTGTGTTGATCTTCTCCCCACGGTCG TCCAACTCGCGTGCTGCTCAGATTGGCACCCCGGGGCACTCTGTCCACCC CGTGGTCAACGAAGGTGAGCGAGAGGTCAACCCCTACGTGGGAGCGGAAG CTTGAACTTTGAACGGTATGATGCTGTTCACAACTATATTGTTACCAGTT CATTGTCCCAGCGCCACCAGAAAAAACTAATGATCCCTGCGAACTTACCG ATGCCATTGTTGTTCATGTAGCATGATACCATGTGCTTCGAAGTATGCGA CTTGCGTCGGAACAGATTCAGAGCATACTGTTGCACTCGACACCGTTTGT AACTGCTTTGATCTTTAAAGAATGCGAATAAAAATTTAAGCCCGTTTCAA ATGTCCCGGTTCGAGAAGGAAATCCCGCGTTACTTGTGTTCCCGTGACGG ATTTCCGACATGATCGAATGGGCGGCCGGGGATTGGCTTGTACGGCCGGG CTGATCCGGGCCGCAGCAATTCAGGAGTGGGCTGTGGCCCGAAGGACGGG CGTGACGTACGTGCACAAGGGACAGCACCCGCTTACTGAGCATTACAGGT TTGCAGCTGTCTGTCGTGCCTCCCCCGCTCCTCAAATTATCGAAACGTGA CGAAATCCATCGTTGCATCGTGCGCGTGTTGGCTGGTGGCTTCGTGGACA CCGTTGAGCTTTCCCGCTCTGGGCGTTCTCAGGATGTGCGTAGCATGAGA CCCTCGAGTTCGCCGTAAACGTCGAGCTGGACCTAGGTTGTTGCGTACGT TGCACCCCAGCGTGGTTTTGTCGACAGGCCCCTCTGCCGTGATTGGCAGT CTTGCATTCCACGTAGATTCGGCGTCTGAATCCACCAAGGTAGTGAGGGT CCTGGACCTCAAAATGCAAAACTCTGGGACCATACAAATCACCCGACCGC TTTTCTTTTGGCTAGTCTCGGCGTCTACTTTAGCCTCTCTCCTACCGCGG CTTTGCGTGTGGTTTCTTTTCAACCGAGGGATGCAGCAAAAAAATATTTC TCATTTGCCTGTCTGCCCCCGTAAAACAAAAAGCTGCTTCGCGGCAGAGG TGCCCGTCCAGGGCGACGAGGCCAATGACAAGGGACGGGCCGTGCTTGCC AAGCTGTGCGCCCGAGACAGAGTGCTGGTCTGCGGGCAGGCCTCTTCCCA TTGCGTCAACTTTTCTGCGAGGGACCTTGCAGCGGCGTGGAAGCGGACCA CGACGGGGGCGCTAGAGGACGAGATTGCTCGGCGACGAATGGGAAGCCTG GTGTTGCTCAAGGATGGCATGTCACCGGTCCCTGGGTTTGAGGTGGGCGG CCAGAACTGCTTCTCTTCCTGTGAATCTCACTTCATGATTCTCTGGCTCA CTTCATTTATTTCGTTGCCGTTAATGCTTGTCGGGCTGTCGTCAGAAACG CGTATGGCACCAACACGCACGCACAACACGCACGCACGAGAGTAGTATTC GTAGATGTGCCGCACAGGTGTGTGCGATAGAAATATTTGCAGCTCTTTTT TTAGTTGGCTTGGTGGAACGAAGTCCGGTCTGGCCGTCGCGCGTGTCCTT GAGAAGTATCCGTTTTTTTCTGTCTTCATTGTCGAAGTATCGAGCATAGC GTTTGTGGAAGAAAGACAGCAAAGATAAGGCGAACGATATATTGAAGGAG CTGGCGGACTCAAAACGCGCAACCTGCGGGTGGTGTGCGGCGCTATGAAT TGTTGCCAAACGAGAATCGAAACCTGCAGCTGCCGTCGTAGAAAGCACGT TAGTTTGATTTTCTGCTGTCAATCAATCAATTCGAGCTGCAACACGCAGT GAGTCGTGCCTGATATAGAGCTGGGTCAGGGTGCAAGTAGAATCTACATT TATGCGGCGGAGTTCGCAACGACCTTTTGACCCTAGTACACAATTTCGAG CCGGTTTGTCGTGTCTTCTTATTTCGAGATGGTCGAGGGTACTTCGGGCG CATGTCTAACCAGAGATATAAAAGCCACCAAACATCCTCGACGAGCTGGC CGTCGTGTCTTCCAGTTTCGAGATATAGGCCAGGGTGCTTGAATCACCGC GTCTTACTGGAGAAAGAACCCACCAATTATCCTCAGAGATGGCGAGACCG TCTAGAGCAGCTTTGACCGACCTTGTTGCGGATGTTTGGGTCGCTGGCCG TCCCACAGAGGAGGGTTTCCTGCTCTCCCGACCAATGAAAATGCTTTCAA GTTTTTTGCCAAATTCTCAACAACCGTTACTTCTTGGGCACGTACTGCCA CCCACTATCCATGAAGCAGAATCGGTGCCCGCTGTCCCTTCCAGGTATTG TCTCGTTTCGAGATTTCGAAATGGGCCGAGGTGTTTTGAGACACTAATGC TAGCTTGAAACAGGAGGCACCAAAGGACCTGAACATTGGCGAGACCCTCC GGTGTCACGCAAGGCGCCCAGCCGTGTGTGGTTAGTTTGGTCGCCGCGTG GCCCAGAGCGCCAAACGAGAATCGAGAGAAAGTTTGGCAAGGGTCGACCC CGCCGCCTGTAAAGCGGACACGCGCGCACGCACGAACATTTTTTCGTTAG TTCTGTTCGTACTTTTGCGGCCGGGGACTTCTTGAGGTTGACGGACGAGA TGTATTTGCGATTCCATGAACAAATTTGTCCACAGCAGATTATGACGAGT GTAGGTGTTTCCCCACAGTAGTAGTGGTCTCGCGTCGTGGGAGTGGCTCC CCTGCAACTCCCTGCCGTATTAGCTGACCACCCACCCTCTCATGTGCTGC TTGACGCTGTTTTCAGAATGAAGCATCACAGTTCTTCGAAGATATGGCCG GGATGGGAATCAGCGTGCGCACGTGTGCGGAAGCCTTCAACCTGTGACGA GGCGAACGCGACGCTGTCAGGGCTTCCAAACAACACCTCGTTGCTGGCTA CGAGAGTAGATGAGAGCCGCACTCGGTGCCCCTGCGTGTTGATGGCTGCC GGGGCCGCTGCACATACGGGAGGGGCGCCTTGCCCGGTAGAAGTCGATCT GCTGATAAAGTTGGGTCGCGTGCTTGGCAAAGCACGAAAGTTGTAAAAAT AGCCAGCTTAGAAGTTGAGGGAGACGTTGTGCTCAAGCCTAGGGATTTTT AAGTCATGTATGCTATTTTAGTTCGCTGAATTGTTCAACTGATTACGTGC AATTTGCAACCCTGGGTGATATACGTATCACTTTGCCAGGAGTGCCCTTC GACCAAACAAGGTCGCCTCAAATAGTGTAACCTCGCTACAGCACCAGAAC CGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig75:339862..345764+

>mRNA_P-littoralis_Contig75.103.2 ID=mRNA_P-littoralis_Contig75.103.2|Name=mRNA_P-littoralis_Contig75.103.2|organism=Pylaiella littoralis U1_48|type=CDS|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig75:339862..345764+ (Pylaiella littoralis U1_48)
ATGGAAGAATACAGCATGCGGAGGCTCTCAGACCTCTCTGCCGCTCTTGA
GACGGAGGCCAGCCTAGGAGGCACTACTCTAATGATCGTAGACCCTCAGG
TGGATTTTCACGAGGGAGGGTCGCTCGCCGTTCCTGGTGCACTTGATGAT
GCGGAGCGCATCGCGCATTTCATCGCGAATCACCTCAACGACATCGATGA
ACTGGTCGTAACGCTGGACTCTCATCATCGTCTGGACATCGCTCACCCCA
TGTTCTGGACGGACGGCAGCGGCAGCGGCTCCCACCCCGCGCCTTTCACC
CTGATTACGTCAGAGGACATCCAACAAGGGACTTGGGTACCTGTACAGGG
CGAACACAAGGAGCACTGCCTCGAGTACACCAGACAGCTGGAAAAGGGGG
GAAAATTTACGCTGTGTGTCTGGCCTGAGCACTGTCTGATTGGCACCCCG
GGGCACTCTGTCCACCCCGTGGTCAACGAAGCAATTCAGGAGTGGGCTGT
GGCCCGAAGGACGGGCGTGACGTACGTGCACAAGGGACAGCACCCGCTTA
CTGAGCATTACAGCTGCTTCGCGGCAGAGGTGCCCGTCCAGGGCGACGAG
GCCAATGACAAGGGACGGGCCGTGCTTGCCAAGCTGTGCGCCCGAGACAG
AGTGCTGGTCTGCGGGCAGGCCTCTTCCCATTGCGTCAACTTTTCTGCGA
GGGACCTTGCAGCGGCGTGGAAGCGGACCACGACGGGGGCGCTAGAGGAC
GAGATTGCTCGGCGACGAATGGGAAGCCTGGTGTTGCTCAAGGATGGCAT
GTCACCGGTCCCTGGGTTTGAGGTGGGCGGCCAGAACTGCTTCTCTTCCT
GTGAATCTCACTTCATGATTCTCTGGCTCACTTCATTTATTTCGTTGCCG
TTAATGCTTGTCGGGCTGTCGTCAGAAACGCGTATGGCACCAACACGCAC
GCACAACACGCACGCACGAGAGTAG
back to top