mRNA_P-littoralis_Contig75.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.61.1
Unique NamemRNA_P-littoralis_Contig75.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.450e-35
Identity = 72/118 (61.02%), Postives = 84/118 (71.19%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRAVATPGVDRGEH*RPTQLLL 758
            P  FRI AS PA LD  LLQRG+LVRL MGWFGGLITRQSQ+RTR  YDYRVH + D ST  MKL LE Y GDPDAV+GSW+LL+ +  +QV+G+   A  T GV  G   RP  +L+
Sbjct:   25 PDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVDGSG--ATGTSGV-AGRERRPNVILI 139          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.090e-33
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRAVATPGVDRGEH*RPTQLLL 758
            P  FRI AS PA LD SLLQRG+LVRL MGWFGG+ITRQSQ+RTR  YDYRVH + D ST SMKLPLE Y GDPDAV+GSW+LL+ +  +QV+G+   A  T GV  G   RP  +L+
Sbjct:  555 PDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVDGSG--ATGTSGV-AGRERRPNVILI 669          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 9.560e-33
Identity = 66/107 (61.68%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRAVATPGVDR 725
            P  FRI A  PA LD SLLQRGVLV L MGWFGG+ITRQSQ+RTR  YDY +H + D ST SMKLPLE Y  DPDAV+GSW+LL+    +QV+G      A+ GV R
Sbjct:   13 PDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVDGGGN--AASLGVSR 117          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.860e-30
Identity = 64/99 (64.65%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRA 701
            P  FRI AS PA LD SLLQRG+LVRL MGW GG+ITRQSQ+RTR  YDYRVH + D ST SMKLPLE Y  DPDAV+ SW+LL+    +QV+G    A
Sbjct:  124 PDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLERSTVEQVDGGGAAA 221          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.930e-28
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLL 656
            P  F I A  PA +D SLLQRGVLVRL MGWFGG+ITR+SQ+RTR  YDYRVH + D ST SMKLPLE Y G PDAV+GSW+LL
Sbjct:  270 PDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KEM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.710e-28
Identity = 62/94 (65.96%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  378 DTRRGDPGDPGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
            DTR GDPG    FR+  S P  LD  LLQRGVLVRL MGWFGGLI +QS QR    YDY V  E D ST +MKLPL+KYSGDPDA  GSWVLL+
Sbjct:   12 DTRNGDPGG---FRLQESTPTALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDKYSGDPDAAAGSWVLLE 100          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.260e-26
Identity = 60/96 (62.50%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  393 DPGD-------PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
            DPGD       P  FR+  S PA LD SLLQ GVLVRL MGWFGGLI +QS QR    YDY V  E D ST +MKLPL+ YSGDPDA +GSWVLL+
Sbjct:   22 DPGDETQGMEIPAGFRLQESTPAALDRSLLQLGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDTYSGDPDAAVGSWVLLE 115          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.090e-25
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
            P  FRI  +KP  L   LL+RGVLVRL MGWFGGLIT+Q Q+ TR  YDY V  E D ST  MKLPL+KYSGD DA +GSWVLL+
Sbjct:   40 PAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE 124          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KLT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.090e-25
Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 3
Query:  405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
            P  FR+  S PA LD  LLQRGVLVRL MGWFGGLI +QS QR    YDY V  E D ST ++KLPL+KYSGDPDA +GSWVLL+
Sbjct:   46 PAGFRLQESTPAALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNVKLPLDKYSGDPDAAVGSWVLLE 128          
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KNG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.160e-24
Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 3
Query:  318 PRRRAGTFGRRRRQRGPG*RDTRRGDPGDPGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
            P RRA +FGR R+   P   +        P  FR+  S P  LD  LLQRGVLVRL MGWFGGLI  QS QR    YDY VH E D ST +MKLPL+KYSGDPDA +GSWVLL+
Sbjct:  224 PDRRASSFGRGRQHGDPDNPEDETQGMEIPAGFRLQESTPGALDRLLLQRGVLVRLGMGWFGGLIIEQSPQR--HLYDYCVHLEVDHSTRNMKLPLDKYSGDPDAAVGSWVLLE 335          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHL7_9PHAE1.450e-3561.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE1.090e-3362.71C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUW4_9PHAE9.560e-3361.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE2.860e-3064.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J8_9PHAE5.930e-2870.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEM3_9PHAE6.710e-2865.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD5_9PHAE8.260e-2662.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE2.090e-2564.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT3_9PHAE3.090e-2565.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNG7_9PHAE1.160e-2457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:212879..214078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1020
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791547.0900123-UTR-P-littoralis_Contig75:212878..2130881680791547.0900123-UTR-P-littoralis_Contig75:212878..213088Pylaiella littoralis U1_48UTRP-littoralis_Contig75 212879..213088 +
1680791547.138059-UTR-P-littoralis_Contig75:213568..2140781680791547.138059-UTR-P-littoralis_Contig75:213568..214078Pylaiella littoralis U1_48UTRP-littoralis_Contig75 213569..214078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791547.1064022-CDS-P-littoralis_Contig75:213088..2131821680791547.1064022-CDS-P-littoralis_Contig75:213088..213182Pylaiella littoralis U1_48CDSP-littoralis_Contig75 213089..213182 +
1680791547.1246948-CDS-P-littoralis_Contig75:213362..2135681680791547.1246948-CDS-P-littoralis_Contig75:213362..213568Pylaiella littoralis U1_48CDSP-littoralis_Contig75 213363..213568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.61.1prot_P-littoralis_Contig75.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 213089..213568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.61.1

>prot_P-littoralis_Contig75.61.1 ID=prot_P-littoralis_Contig75.61.1|Name=mRNA_P-littoralis_Contig75.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MCAGDGTTGPWGEGDGVGSRGDDDSSIEGDNDTPDNLGDELAPLDEDDDS
VDPDDEIQGVEIPEIPDGFAFKRQSPLVLTVRYCSVECSSGWPWGGLVG*
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mRNA from alignment at P-littoralis_Contig75:212879..214078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.61.1 ID=mRNA_P-littoralis_Contig75.61.1|Name=mRNA_P-littoralis_Contig75.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1200bp|location=Sequence derived from alignment at P-littoralis_Contig75:212879..214078+ (Pylaiella littoralis U1_48)
CGCCCGGCGTGGTTGGTTTTTTTTACGAGCATCGATCTACTGTACAGTAT TTGAGAAGTGTGGCATGGCAATGACGGTGGACGGTTCAGGCGACGAAAAA ACACTTTGGAGGGTTTGGACAAGCCGTACAACTTTACAGATGCTGAACAC GCCAGCGACAACGAGGGAGAGTCTGACGCCGGCAGCGATGGGTGTGGGGG AGAGGATGACATGTGCGCCGGAGACGGAACGACGGGCCCGTGGGGTGAGG GCGACGGTGTCGGCAGCCGGGGCGACGACGATTCCAGCATCGAAGGCGAC AACGGCAAGTTTGATTGTCACCAGATTGATTTGTGTCCTTGTGTTGTTGA TTCAGCTGCTCCGGCTGTTGCTGCTGATCTGTTTCTGATGTTGCTTTTGT TGTCGTATTCAAATATTTCTAGATGTATTTGTCCATGTTTTAAAACTCTG CTTGGTGCGATTTGTAATGCATTTTTACTTGCAGACACGCCCGACAACCT AGGCGACGAGCTGGCACCTTTGGACGAAGACGACGACAGCGTGGACCCGG ATGACGAGATACAAGGCGTGGAGATCCCGGAGATCCCGGATGGTTTCGCA TTTAAGCGTCAAAGCCCGCTGGTCTTGACTGTTCGTTACTGCAGCGTGGA GTGCTCGTCAGGCTGGCCATGGGGTGGTTTGGTGGGTTGATAACTCGGCA GTCTCAGCAGCGTACCCGCCAATTTTACGACTACCGTGTGCACTTTGAGG AAGACTAGAGTACGTGCAGCATGAAGTTGCCGTTGGAAAAGTACAGTGGA GACCCGGATGCAGTGATGGGCTCGTGGGTTTTGCTCAAGGGGGATGCGGC ACAGCAGGTGGAAGGCGCTGCCACGAGAGCTGTAGCTACACCCGGAGTAG ATCGGGGAGAGCACTAACGCCCAACGCAACTCTTGTTGATCAAGAAGGTT GAGAGTTGCTCAATGGTGCCGATTTTTGTTAATTCATTGCGCACTGTTGA TACCGCGTTAATGTTTGAATCGTGCTACAGTAAGCATGGGCTTGAAAGAT GGGTTCGCGTTTGATACAGAAGACCCTGGGTGTGGTGTTCTGAGGTATGT TTTGCATTTTTTTTTGCTGTTTGAATAGCAAGCGGTGGGCGCCAGGGTAG CGATTACATGTTTCCGGATGTTGTGCTGCTATCATGCAATAAAAACAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:212879..214078+

>mRNA_P-littoralis_Contig75.61.1 ID=mRNA_P-littoralis_Contig75.61.1|Name=mRNA_P-littoralis_Contig75.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig75:212879..214078+ (Pylaiella littoralis U1_48)
ATGTGCGCCGGAGACGGAACGACGGGCCCGTGGGGTGAGGGCGACGGTGT
CGGCAGCCGGGGCGACGACGATTCCAGCATCGAAGGCGACAACGACACGC
CCGACAACCTAGGCGACGAGCTGGCACCTTTGGACGAAGACGACGACAGC
GTGGACCCGGATGACGAGATACAAGGCGTGGAGATCCCGGAGATCCCGGA
TGGTTTCGCATTTAAGCGTCAAAGCCCGCTGGTCTTGACTGTTCGTTACT
GCAGCGTGGAGTGCTCGTCAGGCTGGCCATGGGGTGGTTTGGTGGGTTGA
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