mRNA_P-littoralis_Contig75.61.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.450e-35 Identity = 72/118 (61.02%), Postives = 84/118 (71.19%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRAVATPGVDRGEH*RPTQLLL 758
P FRI AS PA LD LLQRG+LVRL MGWFGGLITRQSQ+RTR YDYRVH + D ST MKL LE Y GDPDAV+GSW+LL+ + +QV+G+ A T GV G RP +L+
Sbjct: 25 PDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVDGSG--ATGTSGV-AGRERRPNVILI 139
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.090e-33 Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRAVATPGVDRGEH*RPTQLLL 758
P FRI AS PA LD SLLQRG+LVRL MGWFGG+ITRQSQ+RTR YDYRVH + D ST SMKLPLE Y GDPDAV+GSW+LL+ + +QV+G+ A T GV G RP +L+
Sbjct: 555 PDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVDGSG--ATGTSGV-AGRERRPNVILI 669
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE) HSP 1 Score: 127 bits (319), Expect = 9.560e-33 Identity = 66/107 (61.68%), Postives = 76/107 (71.03%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRAVATPGVDR 725
P FRI A PA LD SLLQRGVLV L MGWFGG+ITRQSQ+RTR YDY +H + D ST SMKLPLE Y DPDAV+GSW+LL+ +QV+G A+ GV R
Sbjct: 13 PDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVDGGGN--AASLGVSR 117
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 125 bits (314), Expect = 2.860e-30 Identity = 64/99 (64.65%), Postives = 73/99 (73.74%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLKGDAAQQVEGAATRA 701
P FRI AS PA LD SLLQRG+LVRL MGW GG+ITRQSQ+RTR YDYRVH + D ST SMKLPLE Y DPDAV+ SW+LL+ +QV+G A
Sbjct: 124 PDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLERSTVEQVDGGGAAA 221
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 121 bits (304), Expect = 5.930e-28 Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLL 656
P F I A PA +D SLLQRGVLVRL MGWFGG+ITR+SQ+RTR YDYRVH + D ST SMKLPLE Y G PDAV+GSW+LL
Sbjct: 270 PDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KEM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM3_9PHAE) HSP 1 Score: 114 bits (286), Expect = 6.710e-28 Identity = 62/94 (65.96%), Postives = 67/94 (71.28%), Query Frame = 3
Query: 378 DTRRGDPGDPGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
DTR GDPG FR+ S P LD LLQRGVLVRL MGWFGGLI +QS QR YDY V E D ST +MKLPL+KYSGDPDA GSWVLL+
Sbjct: 12 DTRNGDPGG---FRLQESTPTALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDKYSGDPDAAAGSWVLLE 100
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 8.260e-26 Identity = 60/96 (62.50%), Postives = 66/96 (68.75%), Query Frame = 3
Query: 393 DPGD-------PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
DPGD P FR+ S PA LD SLLQ GVLVRL MGWFGGLI +QS QR YDY V E D ST +MKLPL+ YSGDPDA +GSWVLL+
Sbjct: 22 DPGDETQGMEIPAGFRLQESTPAALDRSLLQLGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDTYSGDPDAAVGSWVLLE 115
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE) HSP 1 Score: 108 bits (271), Expect = 2.090e-25 Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
P FRI +KP L LL+RGVLVRL MGWFGGLIT+Q Q+ TR YDY V E D ST MKLPL+KYSGD DA +GSWVLL+
Sbjct: 40 PAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE 124
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KLT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT3_9PHAE) HSP 1 Score: 108 bits (270), Expect = 3.090e-25 Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 3
Query: 405 PGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
P FR+ S PA LD LLQRGVLVRL MGWFGGLI +QS QR YDY V E D ST ++KLPL+KYSGDPDA +GSWVLL+
Sbjct: 46 PAGFRLQESTPAALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNVKLPLDKYSGDPDAAVGSWVLLE 128
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Match: A0A6H5KNG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.160e-24 Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 3
Query: 318 PRRRAGTFGRRRRQRGPG*RDTRRGDPGDPGWFRI*ASKPAGLDCSLLQRGVLVRLAMGWFGGLITRQSQQRTRQFYDYRVHFEED*STCSMKLPLEKYSGDPDAVMGSWVLLK 659
P RRA +FGR R+ P + P FR+ S P LD LLQRGVLVRL MGWFGGLI QS QR YDY VH E D ST +MKLPL+KYSGDPDA +GSWVLL+
Sbjct: 224 PDRRASSFGRGRQHGDPDNPEDETQGMEIPAGFRLQESTPGALDRLLLQRGVLVRLGMGWFGGLIIEQSPQR--HLYDYCVHLEVDHSTRNMKLPLDKYSGDPDAAVGSWVLLE 335 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig75.61.1 >prot_P-littoralis_Contig75.61.1 ID=prot_P-littoralis_Contig75.61.1|Name=mRNA_P-littoralis_Contig75.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp MCAGDGTTGPWGEGDGVGSRGDDDSSIEGDNDTPDNLGDELAPLDEDDDSback to top mRNA from alignment at P-littoralis_Contig75:212879..214078+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig75.61.1 ID=mRNA_P-littoralis_Contig75.61.1|Name=mRNA_P-littoralis_Contig75.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1200bp|location=Sequence derived from alignment at P-littoralis_Contig75:212879..214078+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig75:212879..214078+ >mRNA_P-littoralis_Contig75.61.1 ID=mRNA_P-littoralis_Contig75.61.1|Name=mRNA_P-littoralis_Contig75.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig75:212879..214078+ (Pylaiella littoralis U1_48)back to top |