mRNA_P-littoralis_Contig75.27.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: D8LG10_ECTSI (Cytochrome c oxidase subunit 6b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG10_ECTSI) HSP 1 Score: 156 bits (395), Expect = 2.730e-43 Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 1
Query: 1 MSSASKCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
MSSAS+ FKT P DSRFPTVNQANHCWNLYNEWVLCTKKAEEAG+ KC KR NA+A+CPDEWTEKWDEDRDEGTYAGIK
Sbjct: 1 MSSASRYFKTAPSDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKKCYRKRHNALALCPDEWTEKWDEDRDEGTYAGIK 82
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A7S4JKT8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKT8_9STRA) HSP 1 Score: 105 bits (262), Expect = 7.600e-24 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 16 KCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKA--EEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
K +TTP D+RFP+ NQ+NHCWN YNEW+LC K +EAG C+ RQ AV+ICP W+EKWDE+R+E TY GIK
Sbjct: 31 KSVRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAG-----CKHMRQMAVSICPSIWSEKWDEEREENTYPGIK 104
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A7S4JKQ2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKQ2_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.520e-23 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 16 KCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKA--EEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
K +TTP D+RFP+ NQ+NHCWN YNEW+LC K +EAG C+ RQ AV+ICP W+EKWDE+R+E TY GIK
Sbjct: 73 KSVRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAG-----CKHMRQMAVSICPSIWSEKWDEEREENTYPGIK 146
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A8J2WWH0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWH0_9STRA) HSP 1 Score: 104 bits (259), Expect = 3.090e-23 Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 25 KTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
KTTP D RFP+ NQA+HCWN YNE+V+C KK E + C+ RQ A++ICPD+W KWDE+R+EGT++G+K
Sbjct: 40 KTTPYDKRFPSTNQASHCWNRYNEYVMCLKKTESDEDA---CKPMRQLALSICPDDWWNKWDEEREEGTFSGVK 110
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A7S2SC35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC35_9STRA) HSP 1 Score: 103 bits (256), Expect = 4.980e-23 Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 1 MSSASKCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
MSS KTT D RFP NQANHCWN YNEWV+C K + + C+ RQ AV++CP EW EKWDE+R+EG +AGIK
Sbjct: 19 MSSIVNFMKTTQADKRFPNQNQANHCWNRYNEWVMCLKGTQGDEDA---CKGVRQLAVSLCPCEWVEKWDEEREEGAFAGIK 97
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A7S2D0D8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0D8_9STRA) HSP 1 Score: 102 bits (255), Expect = 6.130e-23 Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 16 KCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
K KT+P D RFP+ NQANHCWN YNEWV+C K AG+ C+ RQ A++ICP++W+ KWDE+R+EG++AG++
Sbjct: 21 KMIKTSPSDKRFPSQNQANHCWNRYNEWVMCLKGT--AGDADA-CKGVRQMALSICPEDWSNKWDEEREEGSFAGVE 94
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: B8BSI6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSI6_THAPS) HSP 1 Score: 101 bits (252), Expect = 7.500e-23 Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 25 KTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
+TTP D+RFPT NQANHCWN YNEW++C K ++ EG C+ R AV ICP WT+KWDE+R EG Y GIK
Sbjct: 1 RTTPRDARFPTQNQANHCWNRYNEWLVCLKSTQDE-EG---CKAMRNMAVKICPTIWTDKWDEERGEGIYPGIK 70
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: K0T774_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T774_THAOC) HSP 1 Score: 102 bits (255), Expect = 7.720e-23 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 16 KCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
K +TTP D+RFPT NQANHCWN YNEW+LC K + EGG C+ + A+ ICP WT+KW+E+R+EGT+ GI+
Sbjct: 34 KATRTTPRDARFPTQNQANHCWNRYNEWLLCLKSTND--EGG--CKSMKNMALKICPSIWTDKWEEEREEGTFPGIQ 106
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A7S2WRP3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP3_9STRA) HSP 1 Score: 102 bits (255), Expect = 7.720e-23 Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 16 KCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
K +TTP DSRFP+ NQANHCWN YNEW+LC K EG C+ R A ICP WT+KWDE+R EGT+AGIK
Sbjct: 32 KAVRTTPRDSRFPSQNQANHCWNRYNEWLLCMKTTNSE-EG---CKTMRHLAAKICPTIWTDKWDEERGEGTFAGIK 104
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Match: A0A7S0GB85_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GB85_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.420e-22 Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 25 KTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCRFKRQNAVAICPDEWTEKWDEDRDEGTYAGIK 246
KTTP FP+ NQA HCWN YNEWV+C K E G+ G KC RQ A +ICPDEW EKWDE+R+EGT+ G+K
Sbjct: 50 KTTPRQHNFPSQNQAAHCWNRYNEWVVCMKTTE--GDRG-KCAGSRQLAGSICPDEWQEKWDEEREEGTFPGMK 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig75.27.1 >prot_P-littoralis_Contig75.27.1 ID=prot_P-littoralis_Contig75.27.1|Name=mRNA_P-littoralis_Contig75.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp MSSASKCFKTTPLDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGEGGGKCback to top mRNA from alignment at P-littoralis_Contig75:75636..81010- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig75.27.1 ID=mRNA_P-littoralis_Contig75.27.1|Name=mRNA_P-littoralis_Contig75.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5375bp|location=Sequence derived from alignment at P-littoralis_Contig75:75636..81010- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig75:75636..81010- >mRNA_P-littoralis_Contig75.27.1 ID=mRNA_P-littoralis_Contig75.27.1|Name=mRNA_P-littoralis_Contig75.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig75:75636..81010- (Pylaiella littoralis U1_48)back to top |