mRNA_P-littoralis_Contig75.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.18.1
Unique NamemRNA_P-littoralis_Contig75.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig75.18.1 vs. uniprot
Match: D8LG08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG08_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.210e-49
Identity = 99/118 (83.90%), Postives = 105/118 (88.98%), Query Frame = 2 
Query:  155 PKVSQLLTRVLAREHDEDKSSSSS-EEDYGLQQMAANASAGLKMEMEMLRESRARDKVDGVDRKACIVDRNQFFNTQIGVGYQHKTVVRQRTVEQPSGAEQRVVDMSVAAATGSKGKR 505
            PK SQLL RVLAREHD D  S    E+DYGLQQMAANASAGLKMEMEMLRES+AR+K DGV+RKACIVDRNQFFNTQIG+GYQHKTVVRQRTVEQP+GA QRVVDMSVAAA G KGKR
Sbjct:    3 PKGSQLLNRVLAREHDGDGGSXXXXEDDYGLQQMAANASAGLKMEMEMLRESKAREKKDGVERKACIVDRNQFFNTQIGIGYQHKTVVRQRTVEQPTGAGQRVVDMSVAAARGKKGKR 120
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BLAST of mRNA_P-littoralis_Contig75.18.1 vs. uniprot
Match: A0A835Z3W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-8
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 2 
Query:  173 LTRVLAREHDEDKSSSSSEEDYGLQQM-----AANASAGLKMEMEMLRESRARDKVDGVDRKA-CIVDRNQFFNTQIGVGYQHKTVVRQRTVEQPSGAEQRVVDMSVAAATGSKGK-RHR 511
            L R +A E      +SSS++  G+ ++     +A   AGL MEME+ R+ RAR+  +G       IVD+ QF NT++G GYQHKTVVRQR+    +    ++VDM+ A A   K K RH+
Sbjct:    3 LERAVADE------ASSSDDGNGMSELKFIPRSAQTDAGLAMEMELTRDLRARELEEGDAAGGNFIVDQTQFRNTEVGKGYQHKTVVRQRSATN-AARPMKIVDMTQARAPTEKHKDRHK 115
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BLAST of mRNA_P-littoralis_Contig75.18.1 vs. uniprot
Match: W7TKF5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.720e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:  269 AGLKMEMEMLRESRARDKVDGVDRKACIVDRNQFFNTQIGVGYQHKTVVRQRTVE 433
            AGL++EM ++RE R RDK +  +R   IVDR  + N +IGVGYQHK V+RQ  V+
Sbjct:   13 AGLELEMALMREERQRDK-ELKERNTSIVDRRVWENHEIGVGYQHKNVMRQAVVQ 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG08_ECTSI2.210e-4983.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3W9_9STRA1.400e-840.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TKF5_9STRA3.720e-552.73Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:58524..62201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1452
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005040.1
Cds size1014
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.18.1prot_P-littoralis_Contig75.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 58675..61914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791545.0654695-UTR-P-littoralis_Contig75:58523..586741680791545.0654695-UTR-P-littoralis_Contig75:58523..58674Pylaiella littoralis U1_48UTRP-littoralis_Contig75 58524..58674 +
1680791545.1304743-UTR-P-littoralis_Contig75:61914..622011680791545.1304743-UTR-P-littoralis_Contig75:61914..62201Pylaiella littoralis U1_48UTRP-littoralis_Contig75 61915..62201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791545.0785933-CDS-P-littoralis_Contig75:58674..588071680791545.0785933-CDS-P-littoralis_Contig75:58674..58807Pylaiella littoralis U1_48CDSP-littoralis_Contig75 58675..58807 +
1680791545.0887156-CDS-P-littoralis_Contig75:59763..598611680791545.0887156-CDS-P-littoralis_Contig75:59763..59861Pylaiella littoralis U1_48CDSP-littoralis_Contig75 59764..59861 +
1680791545.0993385-CDS-P-littoralis_Contig75:60362..606741680791545.0993385-CDS-P-littoralis_Contig75:60362..60674Pylaiella littoralis U1_48CDSP-littoralis_Contig75 60363..60674 +
1680791545.112148-CDS-P-littoralis_Contig75:61443..619141680791545.112148-CDS-P-littoralis_Contig75:61443..61914Pylaiella littoralis U1_48CDSP-littoralis_Contig75 61444..61914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.18.1

>prot_P-littoralis_Contig75.18.1 ID=prot_P-littoralis_Contig75.18.1|Name=mRNA_P-littoralis_Contig75.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=338bp
MPKVSQLLTRVLAREHDEDKSSSSSEEDYGLQQMAANASAGLKMEMEMLR
ESRARDKVDGVDRKACIVDRNQFFNTQIGVGYQHKTVVRQRTVEQPSGAE
QRVVDMSVAAATGSKGKRHRRQEKKNGHQSDSDSSSDDSDDGRGRRKKKK
SSKSSSSNRKSKKRKKHSDKGREHAAKKEKKAKKEKRQRKRSKSTSRRGQ
RDLRAEEEEEEDERETVGSERRRQHTKKKKKRKHREISSPGERSNDGDSS
SSSCTSNSSSDSDEGGGSDDQANAAATDKSMPPPSPISRGAVGKRRLLTP
AEEKLDRARVPLQQLRDLLEKKIRSKQARTDDATDCD*
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mRNA from alignment at P-littoralis_Contig75:58524..62201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.18.1 ID=mRNA_P-littoralis_Contig75.18.1|Name=mRNA_P-littoralis_Contig75.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3678bp|location=Sequence derived from alignment at P-littoralis_Contig75:58524..62201+ (Pylaiella littoralis U1_48)
TACACACATACCGGTACAAGGCAGTGTGAGGAGAATACACGCCTCGGCGT
CAACAATCGCAGCACGGCCGGGCGTTGCCCTTCTGCCTGTGGTACAGAGG
ACGTTACAGACCTGCTGCAGCAGGTGAAAGGGACTTGGCGGCGGTCGGAA
GATGCCGAAAGTAAGCCAGCTGCTGACACGGGTCTTAGCCCGAGAGCATG
ATGAAGACAAGTCTAGCAGTTCTAGCGAGGAGGATTACGGTCTGCAACAG
ATGGCCGCCAACGCCAGCGCGGGACTGAAAATGGGTGAGAGCATGAGAGC
GTGAGAGCGACGACCGAGACGTTACACATGATAGCATAAACTGCGCCACA
AGCAGTAGTCGACTCATGGATCGCAGAAAACCTCTGCTGACAGCTACCCG
TAGGTACATGTGCCTGGTTTGTGACAACGGGCTAGACTGCGGCGGTAGTG
AGCTATTGTGAGAATCAACAACAACATCACATCACATGCCCGCTGCTTGT
CCAATACTCCGGAGTATTTTATATACTTGTACGAAGTGTTGACTTTCAGA
ATTTGGTTCTCCGGAGTATATAAATATCATATCATATGACAACTCACTCG
GTTGTAGAGCAGTCTATGCAGTGTTCGGTAGAGATCATTTTCGAGCGGCA
AAGGTTTGACTTCATCGAAATCAGGTACGTGCACTGCTGAGTTGGCTTTC
GTACGGTTGACACAAGGTATGCTTGCTGGGCTTGATGCGGCTATTTTGTT
AGGGGCAAGGACAGCCCGTTGTCAAAGGCGCGAGAAAGAAAGGTTGACCC
ACGACGACCTTTTTTTTTTACCAGTACAGGAGAGAGTATGAGACGAATTG
TATCATTACATGTTCATATATCTAGCGCCAGGTACCCCAAACAAAATATT
TTTCCTGCGGAGAAAGAGACCCAATGTTGCTCGTCGTTGAAACGTGGTGT
CCCGACCGCATGTTTTGGTGGTTTATCTTGGCTCCAGCACGTATGGGCGA
TAGCGCGATCCTCCTTTCCCGTCTTCACGTCACTGCTGTGTGCGTGAATG
ATGGGATAGCAAATACGAGAGTGGAGTTGTGAAGCATATTGTGCGCTTTC
CGAACCCGAGTGTACCACTTCATACCGCCCCAAGCACCTCCAACTCTCCC
AAGTTTAATCTAGTTTGTTTTTGCTTCTCCCAACCTTGCTGTTTGTTGGT
TCATTCCCCGTGCGCCTCATGTCTTGAATCCCTCTTTCAGAAATGGAAAT
GCTGCGTGAGAGCAGGGCAAGGGACAAGGTTGACGGTGTCGATCGCAAGG
CTTGCATCGTAGACCGCAACCAATTCTTCAACACGCAGGTAAGCGCTCAT
GAGAGAGCTCCGCCCGCAAATTTTTGCACGATCGAAATTACAGATTGCCC
GTCCCACAAAGGACCGGACTTGAATTATTTGTCGTGCTTCTCGTCAGAGT
GTATTCCATCGCCATCGCAAGTACTGTTAGGCCGATCGCGCAGTGTCCCG
GTTGCGCGCGAGAGTAAGCAGCGCCAATTTCAGCTACAAACCCCATTCGA
AACTTGGTTCTCGTAGCTATGCGGATGCCCAAATGCTAATGACAGCCCGC
GGATGTATACGAGTAGTGGGGGCGATACATCCATGTGGCCATGATCGAAA
CCTCAAGTCTGTACTTTTGGCCATGGTTGAAAGCCCAAGTCCACATTTGA
GTTCGTGAATCGCGATGATGATGTTGTTCCTGCTTGAGAACCTCTGCCTT
TTGATGCGGCAGAAGCCGAAACAGGTGTCAAAATTGTGGCGACAATATTG
CACTGGTGTACCGCACGTTCTGAATGCCGAATTTTCCAGATCGGCGTAGG
TTACCAACACAAGACCGTCGTGAGGCAAAGGACGGTGGAGCAGCCATCGG
GTGCCGAACAGCGAGTGGTGGATATGTCGGTAGCCGCCGCTACGGGATCT
AAAGGGAAACGGCATCGCCGGCAGGAGAAGAAAAACGGCCACCAGAGCGA
CAGCGACAGCAGTAGCGATGATAGTGATGATGGAAGGGGCAGGAGAAAGA
AAAAAAAGAGCAGCAAGTCCTCCTCTAGCAACAGAAAGTCAAAAAAGAGA
AAGAAGCATTCGGACAAGGGCAGGGAGCACGCCGCAAAGAAGGAGAAGAA
GGTGCGGCAGCAGTGTTCAAATCCCATAACGATTCGATCTCAGGGAACAT
GTCACCACCCTTTCCTGGCTGCCGCTTGAGATTCATTTGAACTTTCGACC
AGGTGATGCTACCGTGTAGGGGGAGTCGAAGGTAAAGAGGCTTGTTGGGT
TTTACTGTATGTTCAGGTTAGGTGATACCGGCATACCGTCGCAAATACCA
AAGGACCGACCCGGCAATTGTCGTCAGCGCGTGCTTTGTCAGTGACGCTT
TCTTAGCGCTGAACGTGCATCGCAGAGTTCGTACTACTCCTGGTCAAGAA
AACGCTCCCGACCACGTGATACCACCCCAAATAAAGCCTTGTTTTGTATG
CCCGAAACTCTTATCATGTGACGGCGTCGTGACTACAGGTCTTAGGGTGC
GGTAGAGGTCTCTCTTCCGCCCCATCCCACAAAAACCTTTCTTGAGATGC
AGGTCACACTTGATATGACCCGCCGAAGATCTCACATGCCTCGCGCTCTT
GGTGCAGTGTCCTTTTTATCAGTGAAACCCGAAATATTCCGTCCTTGTGT
TGCAGGGATGCAAGTATGTCAAGATCGTACACTTTCATGCCGCCATTGCG
CGACAAGTAGCACACATCTCCCTAGTGGTGAAACAAAGTGTTTCAATGAA
CTCGCATTCGTTGTCGAGATATGCTGAAAGTACGAGCTTGGGGTTTTTGA
GTAATTGTGTGGTGGCACGGTTGTGATACATGTGATCTGATTCCAGCGAG
CGCATTGCCTCGTTCAGCAGGCGAAAAAGGAGAAGCGGCAGAGGAAAAGG
AGTAAATCCACCAGCCGACGTGGGCAGCGTGATTTGAGGGCCGAAGAGGA
GGAGGAGGAAGATGAGAGAGAGACCGTTGGAAGTGAGCGCAGGCGACAAC
ACACGAAAAAAAAGAAAAAGCGCAAGCACCGGGAGATCTCCTCACCGGGG
GAGCGGAGCAATGACGGCGACTCATCATCATCATCTTGTACATCGAATAG
CTCGTCAGATTCCGATGAGGGGGGAGGCAGCGACGACCAAGCCAACGCCG
CCGCGACGGATAAAAGCATGCCACCGCCATCCCCGATCTCTCGAGGGGCC
GTCGGTAAGCGCCGGTTGCTGACCCCGGCCGAGGAAAAGCTTGATAGAGC
AAGGGTCCCGCTGCAGCAGCTCAGAGATTTGTTAGAAAAAAAAATAAGGT
CGAAGCAGGCGCGGACGGACGACGCGACGGATTGCGACTAGCCGGCGCAA
GGCCCTTCTCTTCCTTTTGAAATTGGGAGGGCGGGGGTGTGCGGGTGTTG
GATGGTTTCTTTTTTTATTAGATTTGTTTTTTACGGTAGTAAGGAGGGCG
CGTATGTGATAATGTGATGATTGCTGGTTTGTACTTCGAAGGGTATGATG
AGAAGACAGATTTGTGCTGGCTTTTTCCGAGAAACTCATCACGCCCCTTC
CTGTTAGAATCAATCCGTTTGATTCAATCCGGAGAACGCGACCGATCGAT
ACCGTAGTATAACCACTCGGTATAAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:58524..62201+

>mRNA_P-littoralis_Contig75.18.1 ID=mRNA_P-littoralis_Contig75.18.1|Name=mRNA_P-littoralis_Contig75.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1014bp|location=Sequence derived from alignment at P-littoralis_Contig75:58524..62201+ (Pylaiella littoralis U1_48)
ATGCCGAAAGTAAGCCAGCTGCTGACACGGGTCTTAGCCCGAGAGCATGA
TGAAGACAAGTCTAGCAGTTCTAGCGAGGAGGATTACGGTCTGCAACAGA
TGGCCGCCAACGCCAGCGCGGGACTGAAAATGGAAATGGAAATGCTGCGT
GAGAGCAGGGCAAGGGACAAGGTTGACGGTGTCGATCGCAAGGCTTGCAT
CGTAGACCGCAACCAATTCTTCAACACGCAGATCGGCGTAGGTTACCAAC
ACAAGACCGTCGTGAGGCAAAGGACGGTGGAGCAGCCATCGGGTGCCGAA
CAGCGAGTGGTGGATATGTCGGTAGCCGCCGCTACGGGATCTAAAGGGAA
ACGGCATCGCCGGCAGGAGAAGAAAAACGGCCACCAGAGCGACAGCGACA
GCAGTAGCGATGATAGTGATGATGGAAGGGGCAGGAGAAAGAAAAAAAAG
AGCAGCAAGTCCTCCTCTAGCAACAGAAAGTCAAAAAAGAGAAAGAAGCA
TTCGGACAAGGGCAGGGAGCACGCCGCAAAGAAGGAGAAGAAGGCGAAAA
AGGAGAAGCGGCAGAGGAAAAGGAGTAAATCCACCAGCCGACGTGGGCAG
CGTGATTTGAGGGCCGAAGAGGAGGAGGAGGAAGATGAGAGAGAGACCGT
TGGAAGTGAGCGCAGGCGACAACACACGAAAAAAAAGAAAAAGCGCAAGC
ACCGGGAGATCTCCTCACCGGGGGAGCGGAGCAATGACGGCGACTCATCA
TCATCATCTTGTACATCGAATAGCTCGTCAGATTCCGATGAGGGGGGAGG
CAGCGACGACCAAGCCAACGCCGCCGCGACGGATAAAAGCATGCCACCGC
CATCCCCGATCTCTCGAGGGGCCGTCGGTAAGCGCCGGTTGCTGACCCCG
GCCGAGGAAAAGCTTGATAGAGCAAGGGTCCCGCTGCAGCAGCTCAGAGA
TTTGTTAGAAAAAAAAATAAGGTCGAAGCAGGCGCGGACGGACGACGCGA
CGGATTGCGACTAG
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