mRNA_P-littoralis_Contig75.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.11.1
Unique NamemRNA_P-littoralis_Contig75.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Match: D8LG04_ECTSI (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG04_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 5.490e-60
Identity = 120/185 (64.86%), Postives = 130/185 (70.27%), Query Frame = 3 
Query:  234 PSQDPGTKALLESLERVVMDLNDMENMIENFEEPGAESFFSKVNEYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSRCKDEFGQLNARVLGIKKVRQTVMEGWNAERGRNTEGSSAVAEENGIGVGVATGGN---------------STAEGFPRTAAVAMPKGVGGKAAPG 743
            P  DPGTKALL SLE VVMDLNDMENMIENFEE  AESFFSK+NEYI NLK+VE+KAP C L VPREALERIDDD++QNPE+FAQELL+RCKDE GQL+ARVLGIKKVRQTVMEGW       TEGS  V        G A G N               +TAEG        +PKGVGGK APG
Sbjct:    6 PQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLHVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWR------TEGSGPVNGATPSAGGAAVGPNGAAALAHGRAGSAQKATAEGAEGGGVGVLPKGVGGKGAPG 184
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BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Match: A0A6H5JGA7_9PHAE (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.060e-37
Identity = 79/111 (71.17%), Postives = 86/111 (77.48%), Query Frame = 3 
Query:  234 PSQDPGTKALLESLERVVMDLNDMENMIENFEEPGAESFFSKVNEYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSR-----CKDEFGQLNARVLGIK 551
            P  DPGTKALL SLE VVMDLNDMENMIENFEE  AESFFSK+NEYI NLK+VE+KAP C LQVPREALERIDDD++QNPE+FAQELL+      C D     NA  L  K
Sbjct:    6 PQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLQVPREALERIDDDVDQNPEIFAQELLASQPCTLCADGEHHTNAVYLAFK 116
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BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Match: A0A835Z750_9STRA (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z750_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-13
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  282 VVMDLNDMENMIENFEEPGAESFFSKVNEYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSRCKDEFGQLNARVLGIKKVRQTVMEGWNAERG 596
            VV+ L+++EN IENF E   +  FS++N Y+  L+ +      CD  VP +ALER+D++   NPEVF+ ELL RC+ EF  +  +  GI+++R+ V + W    G
Sbjct:    4 VVLTLDELENRIENFVE--EKPLFSQINAYVDKLQALSDARETCDADVPVQALERLDNNFNNNPEVFSLELLQRCRAEFDAVRNKAEGIRQLREGVAD-WRGGGG 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG04_ECTSI5.490e-6064.86Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5JGA7_9PHAE1.060e-3771.17Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z750_9STRA1.080e-1340.00Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:31078..35602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog653948.CCA20712
PFAMsMed10
Model size1921
Max annot lvl2759|Eukaryota
KEGG koko:K15151
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.17e-07
EggNOG OGs2CB04@1|root,2S39K@2759|Eukaryota
Ec32 ortholog descriptionMediator complex, subunit Med10
Ec32 orthologEc-21_005090.1
DescriptionTranscription factor subunit Med10 of Mediator complex
Cds size540
COG categoryS
BRITEko00000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.11.1prot_P-littoralis_Contig75.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 32244..35387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.649057-UTR-P-littoralis_Contig75:31077..322431680791544.649057-UTR-P-littoralis_Contig75:31077..32243Pylaiella littoralis U1_48UTRP-littoralis_Contig75 31078..32243 -
1680791544.7239604-UTR-P-littoralis_Contig75:35387..356021680791544.7239604-UTR-P-littoralis_Contig75:35387..35602Pylaiella littoralis U1_48UTRP-littoralis_Contig75 35388..35602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.6631348-CDS-P-littoralis_Contig75:32243..324961680791544.6631348-CDS-P-littoralis_Contig75:32243..32496Pylaiella littoralis U1_48CDSP-littoralis_Contig75 32244..32496 -
1680791544.6799905-CDS-P-littoralis_Contig75:32836..328961680791544.6799905-CDS-P-littoralis_Contig75:32836..32896Pylaiella littoralis U1_48CDSP-littoralis_Contig75 32837..32896 -
1680791544.6924214-CDS-P-littoralis_Contig75:33680..337611680791544.6924214-CDS-P-littoralis_Contig75:33680..33761Pylaiella littoralis U1_48CDSP-littoralis_Contig75 33681..33761 -
1680791544.7096944-CDS-P-littoralis_Contig75:35241..353871680791544.7096944-CDS-P-littoralis_Contig75:35241..35387Pylaiella littoralis U1_48CDSP-littoralis_Contig75 35242..35387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.11.1

>prot_P-littoralis_Contig75.11.1 ID=prot_P-littoralis_Contig75.11.1|Name=mRNA_P-littoralis_Contig75.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MSVASNPSQDPGTKALLESLERVVMDLNDMENMIENFEEPGAESFFSKVN
EYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSRCKDE
FGQLNARVLGIKKVRQTVMEGWNAERGRNTEGSSAVAEENGIGVGVATGG
NSTAEGFPRTAAVAMPKGVGGKAAPGNVI*
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mRNA from alignment at P-littoralis_Contig75:31078..35602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.11.1 ID=mRNA_P-littoralis_Contig75.11.1|Name=mRNA_P-littoralis_Contig75.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4525bp|location=Sequence derived from alignment at P-littoralis_Contig75:31078..35602- (Pylaiella littoralis U1_48)
CGGGGGGAGCGTGACTTAGGTGAACGGCTGCTGGGGGGGGGGGTGCAGGA
CGGTGATGATCGCACCGCAGTGACTTCTCCGCTGCTCACCACCCGCCACC
CGCACACCTCACACGGCACACGGGACACCAGTATCTTCCTGAAAGCACAG
TGCTGCACAAAGATATCACAAGGCCCTTTGAACGTTCGTTTCGTCTTGTG
GTCTTTCCTACCGTGATGAGTGTTGCGAGCAATCCGTCGCAGGATCCTGG
AACCAAGGCGCTGCTGGAAAGTCTGGAGAGGGTTGTGATGGACCTCAACG
ACATGGAGAACATGATCGAAAACTTCGAGGAGCCGGGGGCAGAGTCTTTC
TTCTCCAAAGTGTGAGAAGCCTAATAATCCCCTCGATCCATACGGCAGTC
TTTACAGGAGAGCCTCGCCATGTTCCCAATTCAGCGTGAGCAGTGAGACC
TTTTTGCACGTGCACAACAGCATGAGTGCACAGCAGTGCACAGCTCTGTT
GAACACGATCTCCGTAGAGCGGTGCCTACGCCCATCAAATCCGTCCGCAC
TCGTTGTGCTATATTACAAGTATATCATACTCGTATGATACTTCGAAGTA
CGAATTCTTCCGATTATACAACAGCATTAGTATTTCACACACAAGCCACC
TGTTTGCCTGTGGTGTGCAATGTCCAGTGCAGCAGCAGGACTCCTTTGAG
TGTCGAACTCGCAGCTGAAGCGACAAAAAAAGGGTGACACACGCTACTGC
CTCAGGTAACCCTGTAGGTATGCCTGCCTCCCTGCCTTCCTGCTGTGTAC
TTCGCCAGCAGAGTCCCACGCCCCACGGTACCACAGCGGAAGCACACGTA
GTAGACATAAAAGCCCTATGCTGGAAGCCAGTCTACACCCACGGCAGCCC
TGGTTTCAGAACTTCCCTTGTGCTCGCCCAGTTTCATTTTATACTCCGTC
CAAAAAAAACTTCAACAGGCATTCGTTTCCTGTCGTTCCGCCCCGCCTTC
TCTCTGTATGATACGAAGTACTATGATACACAGCAAAGCTACTTGCTGTC
CGGCACTTCTGGTGCGCTATCATATAGTGTGCGTGTGCTAATAAGCACGG
CGGTGGATAGGTTGCAGAAGATACCACGGGACACCCTGGACCGGTTTCAA
AGCCCGCTCGATTATTCCACAGCGAAGAGGGTGCCAACATCAAACGGTAG
CTACTTTTTCGAAAAGCTCTCGAAGAGTTGGTTCCCGCTCCAATGCCGAT
CAAATTACCCTTTTCGATATGCAAAAAGGAATCACACTTCTCACACTACT
TGCATATGGTACTCGAGCTTTGAAGACGGTCCACGGGATGCCGGCATCTT
GTGCGACCAACGGCATGTCGAGCAAGTCTGAGAGGCTCGCCATATCATAC
TGCTGCTCTGCTGTAGACGGCCTACTCCTGTACTGGTACTGTCGACAAGA
AGTGATGTAAAACGGGCGTTGTGTGTATGTCTGCTTTTTGTCCATCGGGG
CTGCAATTTTTTACCTTCAGATCGGATCATTCAATGTGTGGCTACCTCCG
ACAGATCGTGCTACAGTAAGTCTATCTGTCAGGTGCTTCATGGTTCAAGA
GACAGTGCGTATATCCAACCACACCGACCCCTGCCCGGCGTCTTCCGACA
TCAATGTGCGATGCGAAGCTTCGTCTTTTTTTTTGGCACAGCACGATACT
TTGCTCACGCGATTTTCCTGTTTTTGACTCCCTGTCGCTCCACGCTCCGC
CTCCCACCCAACCCCTCCCCGACCCCGCACATGCCGTCCTTTCGTCCCTT
GGGGCTTGGTGTATTACCTTGCTCTGGCTTGTGCGACACAGAAACGAATA
CATCGGGAACTTGAAGGAGGTGGAAAAGAAGGCACCTGCGTGCGATCTGC
AAGTTCCCCGAGAAGCCCTCGAGTGAGTCGCGCGTTCCGGCGGTGCTGGG
GGGGGGGGGGGTAGGCAAGGGTTGAGAAATGTGCCGTATATGCTTCATTA
CATTCTGGGAGAGCGTGCGTATTTTCTGCATGAAAGTCGTTTGGTTCAGG
AGGGCGGCGATTTCTTGTTCTGACTTTTGGAGTAAAATATTTAAAGGTTT
GTGGCAGAACCCGCACATGCCGCATGTACTTGCGCCTCGCGTCATGCCCA
TCCGATGTCATGAACTTCGTAGGCAAGAACACACCTTTACGCGTTTGTTG
TTGGTCCTGTTCCGTGCCCCCCTCGGTTCATTCAACACGAAATCGAAGGG
GTTCCGTGTCTGGCTTTTGTTTGCTGCCTTGGGGCTCTCGAGGGGCGACA
GAACCGTTCCGTACTCGCACACAAGGAAGATATATGCAAAAGCAGTACCT
AGTGGCTCCCAACATACGATGCGACAACAAGCTGGACGGTGATTGTCGCG
ATGCAGAAAAGAAAGACATTTGCCCGAAGGTGGAGCACGCCTTGCCCCCT
GTGACTACAAAATCCAGCCCATCTCGGTATTGCTCGCTCTCTCCCTCTGT
ATCTCTCTCCCTTCACGGTACACAGCACAAAAGGCCTCTTGTTTTGTTTA
CGACCCTCTGAAAGTTACTGTAACGCGTCTTAGTCGGTCAGCCGGTAAGA
GCGGTATCTGCTCAGAAACACCCACGCGCGTGAACACGCGCACGTAATTT
ATCTGTCGCTGCCGTTGGCCTGGTTTTGCGCGCTCACCCGTCCGTCCGCT
GAGCAGGAGAATCGACGACGACTTGGAACAGAACCCGGAGGTTTTCGCGC
AAGAGCTCCTCAGCAGGTATGATTTGTTGACGTCGCAGCATGCTTTGCGG
TCGTGCGTAGCACGGCCACCTCATCAAGTCGGACAGGATGAATGTTTCGA
CGAACACGTTGTCGTGTTCGGCCGCATACGGGCGACGAAGATAGGCTGTT
TTCATCTCCTGACCGTAGGTGCGGGTCACAACAACGTCGACAAACAACAT
TGCGCGTTTGTGTATCGGCGGGCCTGTAAAAATCCACAACAAACGAGCTG
TCGCATATATCGTTTCATTTCGACTTTACCACCACACGAATGAAATACAA
ACACGCCTATTATAGTTTTTGTCCAACGCCGATGCCGTAACGTGCTCGCG
GGGCAGGTGCAAGGACGAGTTCGGCCAACTCAACGCGAGAGTCCTAGGAA
TCAAGAAAGTGCGCCAAACCGTCATGGAAGGCTGGAACGCCGAACGAGGC
AGGAATACGGAGGGTTCCTCGGCTGTTGCCGAGGAAAACGGGATAGGGGT
AGGGGTAGCAACAGGGGGAAATTCAACAGCTGAAGGATTTCCACGAACGG
CTGCAGTCGCAATGCCAAAAGGAGTGGGCGGGAAGGCGGCGCCTGGGAAT
GTTATTTGACCGCGGAGACATGTCTGCCGACCTTTGACAACCAGCTGCAA
GTGGGAGGGGTGCAAGGTCGTTCGATGCTCTTGTACAAAGGCTATCTCCC
CTAAACAATTCCTTATTTTCCGCTCCTTTTTCCGCTCGGGATTCGTGCGT
CCCACTGAAGGGGAGCGGAGGCGGGTGCGATTTTGAACAGGTAGATGGCA
AGGAAATTATTCGTAGTAGAAGCAGCACCGAGGTTAGTGAGAAAGACATT
TGGTGCAGTTCTCCTCTATGTGCAGTCCTCCTTTTGGTCGTCACCGGTGG
TACTGAATTCCGATTGGCCGAAAACCCTTTACCGGGCGTTGCAGTCAGCC
ATGGTCATAACTTCCAAATTCGTTTCCTTCGAGATTCGCGCATCTCCTGG
CTTGTTGGTTCGGTGTCGGCTCTGTTACGGTTCCTCAGATCTACCGCATG
GACCCGCAGCTCTTGTATATATACATAAAAAATATTTTTATTTTCTCTTG
GCCGATCGCCGTAGGCTAGTTTTTTCGTTTGGAGCGTTTGTGGGAGCGTT
TTTCTCGCAGCAAGGTTGCGCTGAAACGTCTGCCACTCAGTGACTTTATT
TTCGATGAAATCGCAGAGTATTTCCTCTCGGATGTTGTCCTTTCTGGTGG
GTACGATGTGTGTGTGTGAAGACGATTGAATTATGATGTACGTGTGAGCG
TTGGCCCGGGCTCCCTCTTACTGTTTGTGCGTTTCGGTGGTTTGTATCAT
CAAGCCCTTTTTGCAACAGTCATAATTTGCTGCTATGTTTGACGGCAGGC
TGTTTCCTGCTGCCTCATTTGTTATTTGTGTGCGTGAGTTCGAAAGGAAG
TAGATCTTCCAAAGGAAGTGGAACTCCTCTGCACCAACAAACTTTGAAAC
GACTCCTGATAATCCATACAAGTACCAAATAGGTTGTCGAGTTTTTGTAG
GGACTGGAAGGTGGTCGACGAGACCGATCACCCATAAAAAAGTGGCATCG
ATCGATTACTTTATTTCGCGCTACTGCAGGAGTGTGACAACCTGACATCC
CGAACCCCAGCCAGCTTCGAGTTGGTGTTTTCATGTTTGCTCTGCGTTCG
TTTTTGCGAGTGGACACCGCAGTACTGAAGCGCATTTTGGTCATCGGAAA
TACCGTGTCAACACTTGGTGTATAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:31078..35602-

>mRNA_P-littoralis_Contig75.11.1 ID=mRNA_P-littoralis_Contig75.11.1|Name=mRNA_P-littoralis_Contig75.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig75:31078..35602- (Pylaiella littoralis U1_48)
ATGAGTGTTGCGAGCAATCCGTCGCAGGATCCTGGAACCAAGGCGCTGCT
GGAAAGTCTGGAGAGGGTTGTGATGGACCTCAACGACATGGAGAACATGA
TCGAAAACTTCGAGGAGCCGGGGGCAGAGTCTTTCTTCTCCAAAGTAAAC
GAATACATCGGGAACTTGAAGGAGGTGGAAAAGAAGGCACCTGCGTGCGA
TCTGCAAGTTCCCCGAGAAGCCCTCGAGAGAATCGACGACGACTTGGAAC
AGAACCCGGAGGTTTTCGCGCAAGAGCTCCTCAGCAGGTGCAAGGACGAG
TTCGGCCAACTCAACGCGAGAGTCCTAGGAATCAAGAAAGTGCGCCAAAC
CGTCATGGAAGGCTGGAACGCCGAACGAGGCAGGAATACGGAGGGTTCCT
CGGCTGTTGCCGAGGAAAACGGGATAGGGGTAGGGGTAGCAACAGGGGGA
AATTCAACAGCTGAAGGATTTCCACGAACGGCTGCAGTCGCAATGCCAAA
AGGAGTGGGCGGGAAGGCGGCGCCTGGGAATGTTATTTGA
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