prot_P-littoralis_Contig75.11.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig75.11.1
Unique Nameprot_P-littoralis_Contig75.11.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length180
Homology
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BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Match: D8LG04_ECTSI (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG04_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 5.850e-65
Identity = 120/185 (64.86%), Postives = 130/185 (70.27%), Query Frame = 0 
Query:    7 PSQDPGTKALLESLERVVMDLNDMENMIENFEEPGAESFFSKVNEYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSRCKDEFGQLNARVLGIKKVRQTVMEGWNAERGRNTEGSSAVAEENGIGVGVATGGN---------------STAEGFPRTAAVAMPKGVGGKAAPG 176
            P  DPGTKALL SLE VVMDLNDMENMIENFEE  AESFFSK+NEYI NLK+VE+KAP C L VPREALERIDDD++QNPE+FAQELL+RCKDE GQL+ARVLGIKKVRQTVMEGW       TEGS  V        G A G N               +TAEG        +PKGVGGK APG
Sbjct:    6 PQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLHVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWR------TEGSGPVNGATPSAGGAAVGPNGAAALAHGRAGSAQKATAEGAEGGGVGVLPKGVGGKGAPG 184
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BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Match: A0A6H5JGA7_9PHAE (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA7_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.890e-42
Identity = 79/111 (71.17%), Postives = 86/111 (77.48%), Query Frame = 0 
Query:    7 PSQDPGTKALLESLERVVMDLNDMENMIENFEEPGAESFFSKVNEYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSR-----CKDEFGQLNARVLGIK 112
            P  DPGTKALL SLE VVMDLNDMENMIENFEE  AESFFSK+NEYI NLK+VE+KAP C LQVPREALERIDDD++QNPE+FAQELL+      C D     NA  L  K
Sbjct:    6 PQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLQVPREALERIDDDVDQNPEIFAQELLASQPCTLCADGEHHTNAVYLAFK 116
[Close]
BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Match: A0A835Z750_9STRA (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z750_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.810e-15
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 0 
Query:   23 VVMDLNDMENMIENFEEPGAESFFSKVNEYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSRCKDEFGQLNARVLGIKKVRQTVMEGWNAERG 127
            VV+ L+++EN IENF E   +  FS++N Y+  L+ +      CD  VP +ALER+D++   NPEVF+ ELL RC+ EF  +  +  GI+++R+ V + W    G
Sbjct:    4 VVLTLDELENRIENFVE--EKPLFSQINAYVDKLQALSDARETCDADVPVQALERLDNNFNNNPEVFSLELLQRCRAEFDAVRNKAEGIRQLREGVAD-WRGGGG 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG04_ECTSI5.850e-6564.86Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5JGA7_9PHAE8.890e-4271.17Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z750_9STRA1.810e-1540.00Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019145Mediator complex, subunit Med10PFAMPF09748Med10coord: 18..120
e-value: 1.6E-9
score: 37.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:32244..35387 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.11.1mRNA_P-littoralis_Contig75.11.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig75 31078..35602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig75.11.1 ID=prot_P-littoralis_Contig75.11.1|Name=mRNA_P-littoralis_Contig75.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MSVASNPSQDPGTKALLESLERVVMDLNDMENMIENFEEPGAESFFSKVN
EYIGNLKEVEKKAPACDLQVPREALERIDDDLEQNPEVFAQELLSRCKDE
FGQLNARVLGIKKVRQTVMEGWNAERGRNTEGSSAVAEENGIGVGVATGG
NSTAEGFPRTAAVAMPKGVGGKAAPGNVI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10