mRNA_P-littoralis_Contig741.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig741.1.1
Unique NamemRNA_P-littoralis_Contig741.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: D8LKN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKN8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-21
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1
Query:    7 PSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            PSRGCHLITSEIVRQMPELREFKVGMAN+FLKHTSASITLNEN
Sbjct:   28 PSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNEN 70          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: D8LMU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.210e-17
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    7 PSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            PSRGCHLITSEI +Q+PELR F+VGMANIFLKHTSAS+T+NEN
Sbjct:   90 PSRGCHLITSEISKQVPELRSFRVGMANIFLKHTSASLTINEN 132          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A7D4SX87_9GAMM (YjbQ family protein n=2 Tax=Thiomicrorhabdus TaxID=2039723 RepID=A0A7D4SX87_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 1.240e-15
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    4 PPSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            P SRG HLIT EI+RQ+PEL+EFKVGM N+F++HTSAS+T+NEN
Sbjct:   11 PKSRGFHLITDEILRQLPELKEFKVGMMNVFIQHTSASLTINEN 54          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A4P9ZTP0_9FUNG (Uncharacterized protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZTP0_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 1.270e-15
Identity = 30/41 (73.17%), Postives = 40/41 (97.56%), Query Frame = 1
Query:   13 RGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            RGCHL+TS+IVR++PELR +++G+ANIFL+HTSAS+TLNEN
Sbjct:   15 RGCHLVTSDIVREVPELRNYRIGLANIFLQHTSASLTLNEN 55          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A1Y2G6G5_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G6G5_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 1.330e-15
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 PPPSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            P  SRGCHL+T EI +Q+PEL++F VGMAN+FL+HTSAS+TLNEN
Sbjct:   11 PAKSRGCHLVTHEIEKQIPELKDFTVGMANVFLQHTSASLTLNEN 55          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A1E3PTG8_9ASCO (UPF0047-domain-containing protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PTG8_9ASCO)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-15
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1
Query:   10 SRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            S GC+L+T EIV Q+PELREFKVGMANIFL+HTSA++TLNEN
Sbjct:   13 SAGCYLVTDEIVSQVPELREFKVGMANIFLQHTSAALTLNEN 54          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A1P8WEH0_9PLAN (Secondary thiamine-phosphate synthase enzyme n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WEH0_9PLAN)

HSP 1 Score: 73.2 bits (178), Expect = 2.610e-15
Identity = 30/42 (71.43%), Postives = 40/42 (95.24%), Query Frame = 1
Query:   10 SRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            SRGCHL+TSEI++Q+PE+ EFKVG+ N+F++HTSAS+TLNEN
Sbjct:   15 SRGCHLVTSEILQQVPEVAEFKVGLLNVFIQHTSASLTLNEN 56          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A433QAE9_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QAE9_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 2.650e-15
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    4 PPSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            P  RGCHLITSEI RQ+P+L+ FKVG+AN+FL+HTSAS+ LNEN
Sbjct:   20 PRPRGCHLITSEIERQLPDLKTFKVGLANVFLQHTSASLCLNEN 63          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A7S2XZV0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.040e-15
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 PSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            PSRGCHLIT E+V Q+PELR F+VG A++F+KHTSAS+TLNEN
Sbjct:   62 PSRGCHLITREVVSQLPELRRFQVGTAHLFIKHTSASLTLNEN 104          
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Match: A0A197K8K9_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K8K9_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 3.860e-15
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 PPPSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN 135
            P   RGCHL+T EI  Q+PEL++F VGMANIFL+HTSAS+TLNEN
Sbjct:   11 PAKKRGCHLVTREIENQLPELKQFSVGMANIFLQHTSASLTLNEN 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig741.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN8_ECTSI1.540e-2197.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMU1_ECTSI2.210e-1783.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7D4SX87_9GAMM1.240e-1572.73YjbQ family protein n=2 Tax=Thiomicrorhabdus TaxID... [more]
A0A4P9ZTP0_9FUNG1.270e-1573.17Uncharacterized protein n=1 Tax=Dimargaris cristal... [more]
A0A1Y2G6G5_9FUNG1.330e-1571.11Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A1E3PTG8_9ASCO1.500e-1578.57UPF0047-domain-containing protein n=1 Tax=Nadsonia... [more]
A0A1P8WEH0_9PLAN2.610e-1571.43Secondary thiamine-phosphate synthase enzyme n=1 T... [more]
A0A433QAE9_9FUNG2.650e-1572.73Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S2XZV0_9STRA3.040e-1574.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A197K8K9_9FUNG3.860e-1571.11Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig741contigP-littoralis_Contig741:123..257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKN8
PFAMsUPF0047
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K08773
KEGG Pathwayko04014,ko05200,ko05212,map04014,map05200,map05212
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.53e-22
EggNOG OGsCOG0432@1|root,KOG3267@2759|Eukaryota
DescriptionUncharacterised protein family UPF0047
Cds size135
COG categoryC
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791535.6459057-CDS-P-littoralis_Contig741:122..2571680791535.6459057-CDS-P-littoralis_Contig741:122..257Pylaiella littoralis U1_48CDSP-littoralis_Contig741 123..257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig741.1.1prot_P-littoralis_Contig741.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig741 123..257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig741.1.1

>prot_P-littoralis_Contig741.1.1 ID=prot_P-littoralis_Contig741.1.1|Name=mRNA_P-littoralis_Contig741.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
PPPSRGCHLITSEIVRQMPELREFKVGMANIFLKHTSASITLNEN
back to top

mRNA from alignment at P-littoralis_Contig741:123..257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig741.1.1 ID=mRNA_P-littoralis_Contig741.1.1|Name=mRNA_P-littoralis_Contig741.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig741:123..257- (Pylaiella littoralis U1_48)
CCGCCCCCCTCTCGAGGCTGCCACCTCATCACCAGCGAGATTGTTCGACA GATGCCCGAACTCAGGGAGTTCAAGGTCGGAATGGCCAACATTTTTCTCA AGCACACCTCGGCCTCCATCACTCTCAACGAGAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig741:123..257-

>mRNA_P-littoralis_Contig741.1.1 ID=mRNA_P-littoralis_Contig741.1.1|Name=mRNA_P-littoralis_Contig741.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig741:123..257- (Pylaiella littoralis U1_48)
CCGCCCCCCTCTCGAGGCTGCCACCTCATCACCAGCGAGATTGTTCGACA
GATGCCCGAACTCAGGGAGTTCAAGGTCGGAATGGCCAACATTTTTCTCA
AGCACACCTCGGCCTCCATCACTCTCAACGAGAAC
back to top