mRNA_P-littoralis_Contig1189.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A2G8S714_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S714_9APHY) HSP 1 Score: 60.1 bits (144), Expect = 6.100e-7 Identity = 52/198 (26.26%), Postives = 82/198 (41.41%), Query Frame = 1
Query: 79 MCYNCRGIGHFARDCTVKIC-KRCQGRGHDEDKYGSPADLRTNLAVELPDCDSG----SAVGLEPWHV----DSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTGEQLLMRP-DNDLYVSYGRRVDGEVETA 636
+CYNCRG+GH AR+C K K Q D +PA N A E G SA+ P DSGAS + FR N + + + G GD+ + + + + L+ +++ Y P+ A+ L+S+ + GY + + ++S+ + P N LY R V+ TA
Sbjct: 558 ICYNCRGVGHIARNCRQKGGGKEGQWPKPKTDDAANPAKADANAATEKGFLALGNVVTSALAAVPGTYIDVFDSGASVHISPYRECFVKFRELNPARAITAANGEQFFATGEGDVEIRVPNGPSTQLLTLRDVLYSPSVAFALVSIKRVDEGGYTTIFEHGECHIVERSSELDIARIPLTNGLYQIVSRYVEVPSATA 755
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: T1J0W8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0W8_STRMM) HSP 1 Score: 59.7 bits (143), Expect = 7.610e-7 Identity = 43/160 (26.88%), Postives = 68/160 (42.50%), Query Frame = 1
Query: 79 MCYNCRGIGHFARDCTVKICKRCQGRGHDE-----DKYGSPADLRTNLAVELPDCDSGSAVGL------EPWHVDSGASGTVMRSSRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSML--MAVKNAAYVPTFAYNLLSMSQCVRQGYKFET 519
C+NC G+GHFA+DC KR ++ DK S + P DS V L + +++DS + V + + NF+ + I+G GDI + + D+ + + +KN Y P F NL+S S+C + Y T
Sbjct: 263 QCFNCSGLGHFAKDCPSPRKKRDNRNANNSVVKNSDKVLSVKSGKRGAFYAHPIFDSHDTVALSSVLSNDTFYLDSACTNHVCSNKSLFVNFKSIKPVPLELGEGYSSIEGIGDIEL-ITYDLDGIQNEVTLKNVCYAPKFKRNLISESKCDKASYDVHT 421
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR) HSP 1 Score: 58.2 bits (139), Expect = 2.650e-6 Identity = 42/177 (23.73%), Postives = 83/177 (46.89%), Query Frame = 1
Query: 79 MCYNCRGIGHFARDCTVKICKRCQGRGHDEDKYGSPADLRTNLAVELP-DCDSGSAVGLEPWHVDSGASGTVMRSSRMMTNF--RPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTGE--QLLMRPDNDLY 594
CYNC GH DC + + + ++D+ + R +A+ +C+ + W +DSG S + + T P + + G + + Q++ +G I +++++ +L V+ + P YNLLS+ Q ++ GY+ D+ +T K TG+ ++ R N+L+
Sbjct: 343 QCYNCNQFGHIKADCWNEPQAQAAVQDEEDDE-----EYRLFMAIGCEKNCEQ------DVWFLDSGCSNHMTPKRDIFTCMYNTPKHHVKLG-NGKSIQVENKGKIKLEVEAGKYRVLDDVQ---FAPELGYNLLSVGQLMKAGYRLSFDEDKCTITHKQTGDIMSVIWRSSNNLF 504
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A834R2W3_SARSC (Copia protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R2W3_SARSC) HSP 1 Score: 57.4 bits (137), Expect = 4.390e-6 Identity = 43/148 (29.05%), Postives = 68/148 (45.95%), Query Frame = 1
Query: 76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVMRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFE 516
P+C+NC+ IGH A+DC + R + + + +Y +D N+A +++ W +DSGA + +++ N R N V P I G VDL++D M+V +VP F N LS SQ + G+ E
Sbjct: 206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQ-QY---SDRVVNIAS--------NSILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A834RG90_SARSC (Uncharacterized protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RG90_SARSC) HSP 1 Score: 57.4 bits (137), Expect = 4.780e-6 Identity = 43/148 (29.05%), Postives = 68/148 (45.95%), Query Frame = 1
Query: 76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVMRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFE 516
P+C+NC+ IGH A+DC + R + + + +Y +D N+A +++ W +DSGA + +++ N R N V P I G VDL++D M+V +VP F N LS SQ + G+ E
Sbjct: 206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQ-QY---SDRVVNIAS--------NSILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS) HSP 1 Score: 56.6 bits (135), Expect = 8.230e-6 Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
CY C +GHF +DC VK+ + + H ED+ D VE + + L W VDSG S + + ++ ++ + + + + DN H+++ G I ++ + G + +KN +VP NLLS+ V G
Sbjct: 248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KKQ4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KKQ4_9BRAS) HSP 1 Score: 56.6 bits (135), Expect = 8.260e-6 Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
CY C +GHF +DC VK+ + + H ED+ D VE + + L W VDSG S + + ++ ++ + + + + DN H+++ G I ++ + G + +KN +VP NLLS+ V G
Sbjct: 248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KB33_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB33_9BRAS) HSP 1 Score: 56.6 bits (135), Expect = 8.770e-6 Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
CY C +GHF +DC VK+ + + H ED+ D VE + + L W VDSG S + + ++ ++ + + + + DN H+++ G I ++ + G + +KN +VP NLLS+ V G
Sbjct: 248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2JWG0_9BRAS (Uncharacterized protein n=10 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JWG0_9BRAS) HSP 1 Score: 56.6 bits (135), Expect = 8.980e-6 Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
CY C +GHF +DC VK+ + + H ED+ D VE + + L W VDSG S + + ++ ++ + + + + DN H+++ G I ++ + G + +KN +VP NLLS+ V G
Sbjct: 248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KB39_9BRAS (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB39_9BRAS) HSP 1 Score: 56.6 bits (135), Expect = 9.310e-6 Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
CY C +GHF +DC VK+ + + H ED+ D VE + + L W VDSG S + + ++ ++ + + + + DN H+++ G I ++ + G + +KN +VP NLLS+ V G
Sbjct: 522 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 659 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1189.6.1 >prot_P-littoralis_Contig1189.6.1 ID=prot_P-littoralis_Contig1189.6.1|Name=mRNA_P-littoralis_Contig1189.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp RGNNRKKKSSDGKDGAEDDKPSAKGPMCYNCRGIGHFARDCTVKICKRCQback to top mRNA from alignment at P-littoralis_Contig1189:20282..21052- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1189.6.1 ID=mRNA_P-littoralis_Contig1189.6.1|Name=mRNA_P-littoralis_Contig1189.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig1189:20282..21052- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1189:20282..21052- >mRNA_P-littoralis_Contig1189.6.1 ID=mRNA_P-littoralis_Contig1189.6.1|Name=mRNA_P-littoralis_Contig1189.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1189:20282..21052- (Pylaiella littoralis U1_48)back to top |