mRNA_P-littoralis_Contig1189.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1189.6.1
Unique NamemRNA_P-littoralis_Contig1189.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A2G8S714_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S714_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 6.100e-7
Identity = 52/198 (26.26%), Postives = 82/198 (41.41%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKIC-KRCQGRGHDEDKYGSPADLRTNLAVELPDCDSG----SAVGLEPWHV----DSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTGEQLLMRP-DNDLYVSYGRRVDGEVETA 636
            +CYNCRG+GH AR+C  K   K  Q      D   +PA    N A E      G    SA+   P       DSGAS  +         FR  N  + +   +       G GD+ + + +   + L+ +++  Y P+ A+ L+S+ +    GY    +     + ++S+   +   P  N LY    R V+    TA
Sbjct:  558 ICYNCRGVGHIARNCRQKGGGKEGQWPKPKTDDAANPAKADANAATEKGFLALGNVVTSALAAVPGTYIDVFDSGASVHISPYRECFVKFRELNPARAITAANGEQFFATGEGDVEIRVPNGPSTQLLTLRDVLYSPSVAFALVSIKRVDEGGYTTIFEHGECHIVERSSELDIARIPLTNGLYQIVSRYVEVPSATA 755          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: T1J0W8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0W8_STRMM)

HSP 1 Score: 59.7 bits (143), Expect = 7.610e-7
Identity = 43/160 (26.88%), Postives = 68/160 (42.50%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDE-----DKYGSPADLRTNLAVELPDCDSGSAVGL------EPWHVDSGASGTVMRSSRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSML--MAVKNAAYVPTFAYNLLSMSQCVRQGYKFET 519
             C+NC G+GHFA+DC     KR     ++      DK  S    +       P  DS   V L      + +++DS  +  V  +  +  NF+    +          I+G GDI + +  D+  +   + +KN  Y P F  NL+S S+C +  Y   T
Sbjct:  263 QCFNCSGLGHFAKDCPSPRKKRDNRNANNSVVKNSDKVLSVKSGKRGAFYAHPIFDSHDTVALSSVLSNDTFYLDSACTNHVCSNKSLFVNFKSIKPVPLELGEGYSSIEGIGDIEL-ITYDLDGIQNEVTLKNVCYAPKFKRNLISESKCDKASYDVHT 421          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A5N6L843_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L843_9ASTR)

HSP 1 Score: 58.2 bits (139), Expect = 2.650e-6
Identity = 42/177 (23.73%), Postives = 83/177 (46.89%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDEDKYGSPADLRTNLAVELP-DCDSGSAVGLEPWHVDSGASGTVMRSSRMMTNF--RPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTGE--QLLMRPDNDLY 594
             CYNC   GH   DC  +   +   +  ++D+     + R  +A+    +C+       + W +DSG S  +     + T     P + +  G +  + Q++ +G I +++++    +L  V+   + P   YNLLS+ Q ++ GY+   D+    +T K TG+   ++ R  N+L+
Sbjct:  343 QCYNCNQFGHIKADCWNEPQAQAAVQDEEDDE-----EYRLFMAIGCEKNCEQ------DVWFLDSGCSNHMTPKRDIFTCMYNTPKHHVKLG-NGKSIQVENKGKIKLEVEAGKYRVLDDVQ---FAPELGYNLLSVGQLMKAGYRLSFDEDKCTITHKQTGDIMSVIWRSSNNLF 504          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A834R2W3_SARSC (Copia protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R2W3_SARSC)

HSP 1 Score: 57.4 bits (137), Expect = 4.390e-6
Identity = 43/148 (29.05%), Postives = 68/148 (45.95%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVMRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFE 516
            P+C+NC+ IGH A+DC   +  R   + + + +Y   +D   N+A         +++    W +DSGA      + +++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  N LS SQ  + G+  E
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQ-QY---SDRVVNIAS--------NSILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A834RG90_SARSC (Uncharacterized protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RG90_SARSC)

HSP 1 Score: 57.4 bits (137), Expect = 4.780e-6
Identity = 43/148 (29.05%), Postives = 68/148 (45.95%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVMRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFE 516
            P+C+NC+ IGH A+DC   +  R   + + + +Y   +D   N+A         +++    W +DSGA      + +++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  N LS SQ  + G+  E
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQ-QY---SDRVVNIAS--------NSILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQLRKDGFDLE 336          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 8.230e-6
Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +  + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KKQ4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KKQ4_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 8.260e-6
Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +  + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KB33_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB33_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 8.770e-6
Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +  + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2JWG0_9BRAS (Uncharacterized protein n=10 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JWG0_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 8.980e-6
Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +  + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 385          
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Match: A0A6D2KB39_9BRAS (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB39_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 9.310e-6
Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVMRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQG 504
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +  + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V  G
Sbjct:  522 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAVDSG 659          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1189.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2G8S714_9APHY6.100e-726.26Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
T1J0W8_STRMM7.610e-726.88Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A5N6L843_9ASTR2.650e-623.73Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A834R2W3_SARSC4.390e-629.05Copia protein n=1 Tax=Sarcoptes scabiei TaxID=5228... [more]
A0A834RG90_SARSC4.780e-629.05Uncharacterized protein n=1 Tax=Sarcoptes scabiei ... [more]
A0A6D2KMT4_9BRAS8.230e-626.71Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KKQ4_9BRAS8.260e-626.71Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KB33_9BRAS8.770e-626.71Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2JWG0_9BRAS8.980e-626.71Uncharacterized protein n=10 Tax=Coluteocarpeae Ta... [more]
A0A6D2KB39_9BRAS9.310e-626.71ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1189contigP-littoralis_Contig1189:20282..21052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog225117.XP_009346568.1
PFAMsDUF4219,Retrotran_gag_2
Model size645
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5K@33090|Viridiplantae,3GICD@35493|Streptophyta,4JSBY@91835|fabids
Descriptiongag-polypeptide of LTR copia-type
Cds size645
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.1516235-CDS-P-littoralis_Contig1189:20281..206861680789498.1516235-CDS-P-littoralis_Contig1189:20281..20686Pylaiella littoralis U1_48CDSP-littoralis_Contig1189 20282..20686 -
1680789498.16303-CDS-P-littoralis_Contig1189:20812..210521680789498.16303-CDS-P-littoralis_Contig1189:20812..21052Pylaiella littoralis U1_48CDSP-littoralis_Contig1189 20813..21052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1189.6.1prot_P-littoralis_Contig1189.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1189 20282..21052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1189.6.1

>prot_P-littoralis_Contig1189.6.1 ID=prot_P-littoralis_Contig1189.6.1|Name=mRNA_P-littoralis_Contig1189.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
RGNNRKKKSSDGKDGAEDDKPSAKGPMCYNCRGIGHFARDCTVKICKRCQ
GRGHDEDKYGSPADLRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVMRS
SRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAY
VPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTGEQLLMRPDNDLYVS
YGRRVDGEVETACAV
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mRNA from alignment at P-littoralis_Contig1189:20282..21052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1189.6.1 ID=mRNA_P-littoralis_Contig1189.6.1|Name=mRNA_P-littoralis_Contig1189.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig1189:20282..21052- (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA GGACGACAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA TAGGCCATTTCGCCCGCGACTGTACTGTGAAGATCTGCAAGCGATGCCAA GGAAGAGGGCACGACGAAGACAAGTACGGGTCTCCGGCTGATTTGCGGAC AAACCTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGTGACTTCGA GCGTAGAGGCCGCGGGGTTCATAGCAAAGGAGCTGGACCTAGCCGGGTGT GTGCATCTATAAGGCAAGTGCGATGATGGTGGTCCAATCGGTGGTGTAGG GGATTTCGCACTGCAGGCTGTTGGTTTAGAACCTTGGCACGTTGACTCCG GGGCTTCAGGCACCGTGATGCGTAGCTCCAGGATGATGACCAACTTCCGA CCGTGCAACAAGCTAGTTGCAGGTCCAGACAATGTCACTCACCAGATTAA AGGCAGAGGTGACATAGCCGTCGACCTCAAGTCTGATGTGGGGTCAATGC TTATGGCTGTCAAAAACGCAGCCTACGTGCCCACGTTTGCCTACAATCTG CTTTCCATGTCCCAGTGCGTGCGACAAGGATACAAATTCGAAACCGATGA CCCCGGTATGCTCGTCACTAAAAAGTCGACTGGAGAACAACTACTGATGC GCCCCGACAATGACTTATATGTCTCATACGGCCGCAGAGTTGATGGTGAG GTAGAAACAGCCTGCGCCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1189:20282..21052-

>mRNA_P-littoralis_Contig1189.6.1 ID=mRNA_P-littoralis_Contig1189.6.1|Name=mRNA_P-littoralis_Contig1189.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1189:20282..21052- (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA
GGACGACAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA
TAGGCCATTTCGCCCGCGACTGTACTGTGAAGATCTGCAAGCGATGCCAA
GGAAGAGGGCACGACGAAGACAAGTACGGGTCTCCGGCTGATTTGCGGAC
AAACCTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGCTGTTGGTT
TAGAACCTTGGCACGTTGACTCCGGGGCTTCAGGCACCGTGATGCGTAGC
TCCAGGATGATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCC
AGACAATGTCACTCACCAGATTAAAGGCAGAGGTGACATAGCCGTCGACC
TCAAGTCTGATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTAC
GTGCCCACGTTTGCCTACAATCTGCTTTCCATGTCCCAGTGCGTGCGACA
AGGATACAAATTCGAAACCGATGACCCCGGTATGCTCGTCACTAAAAAGT
CGACTGGAGAACAACTACTGATGCGCCCCGACAATGACTTATATGTCTCA
TACGGCCGCAGAGTTGATGGTGAGGTAGAAACAGCCTGCGCCGTG
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