mRNA_P-littoralis_Contig1189.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1189.4.1
Unique NamemRNA_P-littoralis_Contig1189.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5KQS5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.900e-28
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  143 YTISMSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            + +S     T A LD  V ++LP GCG+ S   V  E+A+YGLKQSG  W       LV+ +G E+C  DPCVFR++V  VV++I+ ++VDD  VAG   + ++LL +LN+ F T +LGE  +F G A+ +D
Sbjct:   49 WCVSWKTNKTHATLDEEVFLRLPAGCGDKSHNIVKAERAIYGLKQSGRQWGYHAADTLVE-NGFERCNADPCVFRMMVDEVVVMIIVINVDDFLVAGSDEDCEELLASLNKKFPTKNLGECEWFDGYAIERD 179          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.240e-25
Identity = 53/124 (42.74%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPC+FR +V G V+ ++ ++VDD+ VA    E + L  +LN  F   DLGE +++ GCA+  D
Sbjct:  133 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-YGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMD 255          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.570e-25
Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  128 RWDTGYTISMSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +WD      +   +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   DLGE +++ GCA+  D
Sbjct:  254 QWD------VKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 383          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.710e-25
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   DLGE +++ GCA+  D
Sbjct:  476 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 598          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.740e-25
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  155 MSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            ++  +  AKL   + ++ P GCG +SGK V +E+ALYG KQSG  W       LV+ +G EQC+ DPCVFR +V   V+ ++ ++VDD+ VA    E + L  +LN+ F   DLGE +++ GCA+  D
Sbjct:   46 VNQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVE-NGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGEREVLFASLNKKFPVKDLGECTWYDGCAIAMD 172          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.000e-25
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +  AKL   + +  P GC  +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    + ++L  +LN+ F   DLGE +++ GCA++ D
Sbjct:   50 YIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMD 172          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.150e-25
Identity = 53/124 (42.74%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQSG  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   D+GE +++ GCA+  D
Sbjct:  330 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMD 452          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.180e-25
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +  AKL   + ++ P GCG +SGK V +E+ALYGLKQ G  W       L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA    E ++L  +LN+ F   DLGE +++ GCA+  D
Sbjct:  617 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 739          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JK64_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK64_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.240e-25
Identity = 55/139 (39.57%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  122 PTRWDTGYTISMSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            P  WD      +   +T AKL   + ++LP GCG  +GK V +E+ALYGLKQSG  W       L+  +G EQC+ DPC+FR +V G V+ ++ ++VDD+ ++    E ++LL +L E F+  DLG+ +++ GCA+  D
Sbjct:  864 PVHWD------IKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALIS-NGYEQCRVDPCIFRKVVDGKVVGLIVIYVDDIMLSATEEEREELLASLQERFSVKDLGDCTWYDGCAIEVD 995          
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.910e-25
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
            +  AKL   + ++LP GCG +SGK V +E+ALYGLKQSG  W   +   L++ +G EQC+ DPCVFR +V G V+ ++ ++VD++ VA    E ++L  +LN+ F    +GE ++F GCA+  D
Sbjct:  400 YIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIE-NGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMD 522          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQS5_9PHAE5.900e-2843.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.240e-2542.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J7P7_9PHAE1.570e-2540.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.710e-2543.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K738_9PHAE1.740e-2541.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE2.000e-2541.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE2.150e-2542.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE3.180e-2542.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK64_9PHAE3.240e-2539.57CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JK49_9PHAE4.910e-2542.74Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1189contigP-littoralis_Contig1189:18404..18941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3641.EOY17116
PFAMsRVT_2,Retrotran_gag_3
Model size538
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.28e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3GFVM@35493|Streptophyta
DescriptionCysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size384
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.1002393-CDS-P-littoralis_Contig1189:18403..187871680789498.1002393-CDS-P-littoralis_Contig1189:18403..18787Pylaiella littoralis U1_48CDSP-littoralis_Contig1189 18404..18787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.1153107-UTR-P-littoralis_Contig1189:18787..189411680789498.1153107-UTR-P-littoralis_Contig1189:18787..18941Pylaiella littoralis U1_48UTRP-littoralis_Contig1189 18788..18941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1189.4.1prot_P-littoralis_Contig1189.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1189 18404..18787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1189.4.1

>prot_P-littoralis_Contig1189.4.1 ID=prot_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLL
VVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDK
LLVTLNEDFTTVDLGELSFFTGCAVIQD
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mRNA from alignment at P-littoralis_Contig1189:18404..18941-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1189.4.1 ID=mRNA_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=538bp|location=Sequence derived from alignment at P-littoralis_Contig1189:18404..18941- (Pylaiella littoralis U1_48)
ATCGTTACCCCTAATGCTAGACTGGTAGCCAAAGGATTCATGCAACGTGA AGGTGTGAATTACAACCAGACTGCCGCGCCTACACCCGCCGCAGCGTCCG TCAAGATAGTGTTGGCAGTTGCCAACCAGATGGGATACAGGGTATACCAT CTCGATGTCAAACAGGTTCACCCAGGCGAAGCTAGACTGCAGGGTAGTCA TGAAGCTTCCAGGTGGATGTGGCGAGCTGTCTGGCAAATACGTGGACCTC GAGAAGGCGCTGTATGGCCTTAAACAGAGCGGTTTGCTGTGGAACGACTT GCTGGTGGTGAAGCTAGTCAAGAAACACGGCATGGAGCAGTGCAAGACCG ACCCTTGCGTATTTCGGTTGATCGTGAAGGGCGTGGTAATGCTGATCCTG ACGGTTCATGTGGATGACATGGCTGTCGCGGGTCCTCGGGTTGAGGTTGA CAAGCTTCTTGTGACGCTCAACGAGGATTTCACCACGGTGGACCTGGGAG AATTGTCGTTCTTCACGGGGTGCGCCGTCATTCAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1189:18404..18941-

>mRNA_P-littoralis_Contig1189.4.1 ID=mRNA_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1189:18404..18941- (Pylaiella littoralis U1_48)
ATGTCAAACAGGTTCACCCAGGCGAAGCTAGACTGCAGGGTAGTCATGAA
GCTTCCAGGTGGATGTGGCGAGCTGTCTGGCAAATACGTGGACCTCGAGA
AGGCGCTGTATGGCCTTAAACAGAGCGGTTTGCTGTGGAACGACTTGCTG
GTGGTGAAGCTAGTCAAGAAACACGGCATGGAGCAGTGCAAGACCGACCC
TTGCGTATTTCGGTTGATCGTGAAGGGCGTGGTAATGCTGATCCTGACGG
TTCATGTGGATGACATGGCTGTCGCGGGTCCTCGGGTTGAGGTTGACAAG
CTTCTTGTGACGCTCAACGAGGATTTCACCACGGTGGACCTGGGAGAATT
GTCGTTCTTCACGGGGTGCGCCGTCATTCAGGAC
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