mRNA_P-littoralis_Contig1189.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5KQS5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS5_9PHAE) HSP 1 Score: 112 bits (280), Expect = 5.900e-28 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 2
Query: 143 YTISMSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ +S T A LD V ++LP GCG+ S V E+A+YGLKQSG W LV+ +G E+C DPCVFR++V VV++I+ ++VDD VAG + ++LL +LN+ F T +LGE +F G A+ +D
Sbjct: 49 WCVSWKTNKTHATLDEEVFLRLPAGCGDKSHNIVKAERAIYGLKQSGRQWGYHAADTLVE-NGFERCNADPCVFRMMVDEVVVMIIVINVDDFLVAGSDEDCEELLASLNKKFPTKNLGECEWFDGYAIERD 179
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.240e-25 Identity = 53/124 (42.74%), Postives = 78/124 (62.90%), Query Frame = 2
Query: 167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ AKL + ++ P GCG +SGK V +E+ALYGLKQSG W L++ +G EQC+ DPC+FR +V G V+ ++ ++VDD+ VA E + L +LN F DLGE +++ GCA+ D
Sbjct: 133 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-YGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMD 255
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.570e-25 Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 2
Query: 128 RWDTGYTISMSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+WD + + AKL + ++ P GCG +SGK V +E+ALYGLKQSG W L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA E ++L +LN+ F DLGE +++ GCA+ D
Sbjct: 254 QWD------VKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 383
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.710e-25 Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ AKL + ++ P GCG +SGK V +E+ALYGLKQSG W L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA E ++L +LN+ F DLGE +++ GCA+ D
Sbjct: 476 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 598
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.740e-25 Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 2
Query: 155 MSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
++ + AKL + ++ P GCG +SGK V +E+ALYG KQSG W LV+ +G EQC+ DPCVFR +V V+ ++ ++VDD+ VA E + L +LN+ F DLGE +++ GCA+ D
Sbjct: 46 VNQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVE-NGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGEREVLFASLNKKFPVKDLGECTWYDGCAIAMD 172
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.000e-25 Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 2
Query: 167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ AKL + + P GC +SGK V +E+ALYGLKQSG W L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA + ++L +LN+ F DLGE +++ GCA++ D
Sbjct: 50 YIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMD 172
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.150e-25 Identity = 53/124 (42.74%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ AKL + ++ P GCG +SGK V +E+ALYGLKQSG W L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA E ++L +LN+ F D+GE +++ GCA+ D
Sbjct: 330 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMD 452
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.180e-25 Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 2
Query: 167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ AKL + ++ P GCG +SGK V +E+ALYGLKQ G W L++ +G EQC+ DPCVFR +V G V+ ++ ++VDD+ VA E ++L +LN+ F DLGE +++ GCA+ D
Sbjct: 617 YIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIE-NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMD 739
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JK64_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK64_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.240e-25 Identity = 55/139 (39.57%), Postives = 85/139 (61.15%), Query Frame = 2
Query: 122 PTRWDTGYTISMSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
P WD + +T AKL + ++LP GCG +GK V +E+ALYGLKQSG W L+ +G EQC+ DPC+FR +V G V+ ++ ++VDD+ ++ E ++LL +L E F+ DLG+ +++ GCA+ D
Sbjct: 864 PVHWD------IKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALIS-NGYEQCRVDPCIFRKVVDGKVVGLIVIYVDDIMLSATEEEREELLASLQERFSVKDLGDCTWYDGCAIEVD 995
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 110 bits (276), Expect = 4.910e-25 Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 2
Query: 167 FTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLVVKLVKKHGMEQCKTDPCVFRLIVKGVVMLILTVHVDDMAVAGPRVEVDKLLVTLNEDFTTVDLGELSFFTGCAVIQD 538
+ AKL + ++LP GCG +SGK V +E+ALYGLKQSG W + L++ +G EQC+ DPCVFR +V G V+ ++ ++VD++ VA E ++L +LN+ F +GE ++F GCA+ D
Sbjct: 400 YIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIE-NGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMD 522 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1189.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1189.4.1 >prot_P-littoralis_Contig1189.4.1 ID=prot_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp MSNRFTQAKLDCRVVMKLPGGCGELSGKYVDLEKALYGLKQSGLLWNDLLback to top mRNA from alignment at P-littoralis_Contig1189:18404..18941- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1189.4.1 ID=mRNA_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=538bp|location=Sequence derived from alignment at P-littoralis_Contig1189:18404..18941- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1189:18404..18941- >mRNA_P-littoralis_Contig1189.4.1 ID=mRNA_P-littoralis_Contig1189.4.1|Name=mRNA_P-littoralis_Contig1189.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1189:18404..18941- (Pylaiella littoralis U1_48)back to top |