mRNA_P-littoralis_Contig74.163.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.163.1
Unique NamemRNA_P-littoralis_Contig74.163.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.040e-67
Identity = 113/134 (84.33%), Postives = 116/134 (86.57%), Query Frame = 3
Query:  312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
            GGN N  TRAYVNM HGTLPETYD+FV+       T NLGSFHAPRFARLLLEAGADAT   RFP DSDEGEEDE FIGTPL+LATSY RRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE
Sbjct:  245 GGNINVSTRAYVNMAHGTLPETYDDFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFIGTPLELATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 378          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 4.100e-67
Identity = 115/134 (85.82%), Postives = 120/134 (89.55%), Query Frame = 3
Query:  312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
            GGNANTGTRAYVNMDHGTLPETY+EFV+       T NLGSFHAPRFARLLLEAGADAT   RFP DSDEGEEDEGFIGTPLDLATSYVRRFS M+VHREMVRGLKGVIRLL+QEEAVH+VSWTWPIDTGRS E
Sbjct:  666 GGNANTGTRAYVNMDHGTLPETYEEFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYVRRFSTMKVHREMVRGLKGVIRLLQQEEAVHSVSWTWPIDTGRSAE 799          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.460e-66
Identity = 113/134 (84.33%), Postives = 115/134 (85.82%), Query Frame = 3
Query:  312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
            GGNANTGTRAYVNMDHGTLPETYDEFV+       T NLGSFHAP FARLLLEAGADAT   RFP DSDEGEEDEGFIGTPLDLATSY RRFS M VHREMV  LKGVIRLLRQEEAVH+VSWTWPID GRSVE
Sbjct:  299 GGNANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVE 432          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 5.500e-65
Identity = 113/134 (84.33%), Postives = 118/134 (88.06%), Query Frame = 3
Query:  312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
            G  A+T +RAYVNMDHG+LPETYDEFV+       T NLGSFHAPRFARLLLEAGADAT   RFP DSDEGEEDEGFIGTPLDLATSY RRFSPMRVHREMVRGLKGVIRLLRQEEAVH+VSWTWPIDTGRSVE
Sbjct:  635 GRKASTDSRAYVNMDHGSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTGRSVE 768          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.220e-23
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    7 GVKILLRAYANPLLSAYG--SLPLYMAVYDGHQKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG 315
            GVK  + A ANP+L+AY   SLPL +A  +G   VVREL   +G D C+ DGGA AL  AAS+  VDIVTFL D GVVD EG+ALCA +EG  E C+ LLLR +G
Sbjct:  126 GVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQG 230          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.220e-21
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG 315
            ++ VKILL+  ANP+L    + PL +A + GH  VV+ELV  +G D C+ +G   AL TAA   H  I+TFL DAGV DT+G ALC  IEG SEAC+ LL+ RRG
Sbjct:  160 LDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRG 264          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.400e-21
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG 315
            +E V+IL +  ANPLL    + PL +A + GH  VV+ELV  +G D C  +G   AL TAA   H  I+TFL DAGV+DT+G ALC  IEG +EAC+ LL+ RRG
Sbjct:  173 LEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRG 277          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.940e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query:  117 RALVRNRPLYKRRRRTSSRNGRFSQTRGHRHLPVRCRCG 233
            R LVRNR LYKRRRRT SRNGRFSQ+RGHRHLPVRCRCG
Sbjct:  165 RPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203          
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.530e-7
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 MEGVKILLRAYANPLLSAY------GSLPLYMAVYDGHQKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVVDT 240
            ++ V++LL A  +PLL+ +       SLPL +A   GH +VV EL+   G   C  S GG  AL  AA  KH+D++T L +AGVVDT
Sbjct:   63 VDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDT 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JHQ8_9PHAE1.040e-6784.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE4.100e-6785.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.460e-6684.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE5.500e-6584.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE2.220e-2357.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP44_ECTSI1.220e-2152.38EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE3.400e-2151.43Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LH66_ECTSI2.940e-1289.74EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FXY7_ECTSI6.530e-743.68EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:644876..645567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP44
PFAMsAnk_2,Ank_4,Ank_5,HET,NACHT,NACHT_N
Model size692
Max annot lvl2759|Eukaryota
KEGG koko:K10334
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.57e-23
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size537
COG categoryI
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.4213808-CDS-P-littoralis_Contig74:644875..6454121680791534.4213808-CDS-P-littoralis_Contig74:644875..645412Pylaiella littoralis U1_48CDSP-littoralis_Contig74 644876..645412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.4337182-UTR-P-littoralis_Contig74:645412..6455671680791534.4337182-UTR-P-littoralis_Contig74:645412..645567Pylaiella littoralis U1_48UTRP-littoralis_Contig74 645413..645567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.163.1prot_P-littoralis_Contig74.163.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 644876..645412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.163.1

>prot_P-littoralis_Contig74.163.1 ID=prot_P-littoralis_Contig74.163.1|Name=mRNA_P-littoralis_Contig74.163.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp
MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDRCTS
DGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLL
LRRRGEMPTRVRVPTSIWTTVLSRKPMTNSCTQPIWEAFMLPDSRACYSK
PGRTRHWPVGFRTTVMRGKKTKVSSARP*
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mRNA from alignment at P-littoralis_Contig74:644876..645567+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.163.1 ID=mRNA_P-littoralis_Contig74.163.1|Name=mRNA_P-littoralis_Contig74.163.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=692bp|location=Sequence derived from alignment at P-littoralis_Contig74:644876..645567+ (Pylaiella littoralis U1_48)
ATGGAAGGGGTGAAAATTCTCCTTCGGGCGTACGCGAATCCGCTCTTGTC AGCGTACGGAAGTCTCCCGTTATATATGGCGGTCTACGATGGACATCAGA AAGTGGTCCGCGAGCTCGTGCATTGGTACGGAACCGACCGCTGTACAAGC GACGGCGGCGCACTAGCTCTCGCAACGGCCGCTTCTCGCAAACACGTGGA CATCGTCACCTTCCTGTGCGATGCCGGTGTGGTTGATACGGAGGGCGTGG CCCTGTGTGCTGTCATTGAGGGCTGTAGCGAGGCGTGCGTCTACCTTCTG CTGCGGAGACGGGGGGAAATGCCAACACGGGTACGCGTGCCTACGTCAAT ATGGACCACGGTACTCTCCCGGAAACCTATGACGAATTCGTGTACACAAC CAATCTGGGAAGCTTTCATGCTCCCAGATTCGCGCGCTTGCTACTCGAAG CCGGGGCGGACGCGACATTGGCCAGTCGGTTTCCGTACGACAGTGATGAG GGGGAAGAAGACGAAGGTTTCATCGGCACGCCCCTAGACTTGGCCACATC TTATGTTCGCAGATTCAGTCCAATGAGAGTCCACCGCGAGATGGTGCGGG GGCTGAAGGGTGTCATCCGCCTGCTGCGACAGGAGGAGGCAGTTCACGCG GTGTCCTGGACGTGGCCAATCGACACCGGTCGTTCTGTAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:644876..645567+

>mRNA_P-littoralis_Contig74.163.1 ID=mRNA_P-littoralis_Contig74.163.1|Name=mRNA_P-littoralis_Contig74.163.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig74:644876..645567+ (Pylaiella littoralis U1_48)
ATGGAAGGGGTGAAAATTCTCCTTCGGGCGTACGCGAATCCGCTCTTGTC
AGCGTACGGAAGTCTCCCGTTATATATGGCGGTCTACGATGGACATCAGA
AAGTGGTCCGCGAGCTCGTGCATTGGTACGGAACCGACCGCTGTACAAGC
GACGGCGGCGCACTAGCTCTCGCAACGGCCGCTTCTCGCAAACACGTGGA
CATCGTCACCTTCCTGTGCGATGCCGGTGTGGTTGATACGGAGGGCGTGG
CCCTGTGTGCTGTCATTGAGGGCTGTAGCGAGGCGTGCGTCTACCTTCTG
CTGCGGAGACGGGGGGAAATGCCAACACGGGTACGCGTGCCTACGTCAAT
ATGGACCACGGTACTCTCCCGGAAACCTATGACGAATTCGTGTACACAAC
CAATCTGGGAAGCTTTCATGCTCCCAGATTCGCGCGCTTGCTACTCGAAG
CCGGGGCGGACGCGACATTGGCCAGTCGGTTTCCGTACGACAGTGATGAG
GGGGAAGAAGACGAAGGTTTCATCGGCACGCCCCTAG
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