mRNA_P-littoralis_Contig74.163.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.040e-67 Identity = 113/134 (84.33%), Postives = 116/134 (86.57%), Query Frame = 3
Query: 312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
GGN N TRAYVNM HGTLPETYD+FV+ T NLGSFHAPRFARLLLEAGADAT RFP DSDEGEEDE FIGTPL+LATSY RRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE
Sbjct: 245 GGNINVSTRAYVNMAHGTLPETYDDFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFIGTPLELATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 378
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 231 bits (588), Expect = 4.100e-67 Identity = 115/134 (85.82%), Postives = 120/134 (89.55%), Query Frame = 3
Query: 312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
GGNANTGTRAYVNMDHGTLPETY+EFV+ T NLGSFHAPRFARLLLEAGADAT RFP DSDEGEEDEGFIGTPLDLATSYVRRFS M+VHREMVRGLKGVIRLL+QEEAVH+VSWTWPIDTGRS E
Sbjct: 666 GGNANTGTRAYVNMDHGTLPETYEEFVFQETPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYVRRFSTMKVHREMVRGLKGVIRLLQQEEAVHSVSWTWPIDTGRSAE 799
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 222 bits (565), Expect = 1.460e-66 Identity = 113/134 (84.33%), Postives = 115/134 (85.82%), Query Frame = 3
Query: 312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
GGNANTGTRAYVNMDHGTLPETYDEFV+ T NLGSFHAP FARLLLEAGADAT RFP DSDEGEEDEGFIGTPLDLATSY RRFS M VHREMV LKGVIRLLRQEEAVH+VSWTWPID GRSVE
Sbjct: 299 GGNANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVE 432
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 224 bits (572), Expect = 5.500e-65 Identity = 113/134 (84.33%), Postives = 118/134 (88.06%), Query Frame = 3
Query: 312 GGNANTGTRAYVNMDHGTLPETYDEFVY-------TTNLGSFHAPRFARLLLEAGADATLASRFPYDSDEGEEDEGFIGTPLDLATSYVRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVE 692
G A+T +RAYVNMDHG+LPETYDEFV+ T NLGSFHAPRFARLLLEAGADAT RFP DSDEGEEDEGFIGTPLDLATSY RRFSPMRVHREMVRGLKGVIRLLRQEEAVH+VSWTWPIDTGRSVE
Sbjct: 635 GRKASTDSRAYVNMDHGSLPETYDEFVFQEPPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHSVSWTWPIDTGRSVE 768
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 106 bits (265), Expect = 2.220e-23 Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 7 GVKILLRAYANPLLSAYG--SLPLYMAVYDGHQKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG 315
GVK + A ANP+L+AY SLPL +A +G VVREL +G D C+ DGGA AL AAS+ VDIVTFL D GVVD EG+ALCA +EG E C+ LLLR +G
Sbjct: 126 GVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQG 230
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.220e-21 Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG 315
++ VKILL+ ANP+L + PL +A + GH VV+ELV +G D C+ +G AL TAA H I+TFL DAGV DT+G ALC IEG SEAC+ LL+ RRG
Sbjct: 160 LDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRG 264
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.400e-21 Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 1 MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVVDTEGVALCAVIEGCSEACVYLLLRRRG 315
+E V+IL + ANPLL + PL +A + GH VV+ELV +G D C +G AL TAA H I+TFL DAGV+DT+G ALC IEG +EAC+ LL+ RRG
Sbjct: 173 LEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRG 277
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 2.940e-12 Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 3
Query: 117 RALVRNRPLYKRRRRTSSRNGRFSQTRGHRHLPVRCRCG 233
R LVRNR LYKRRRRT SRNGRFSQ+RGHRHLPVRCRCG
Sbjct: 165 RPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 6.530e-7 Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 1 MEGVKILLRAYANPLLSAY------GSLPLYMAVYDGHQKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVVDT 240
++ V++LL A +PLL+ + SLPL +A GH +VV EL+ G C S GG AL AA KH+D++T L +AGVVDT
Sbjct: 63 VDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDT 149 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig74.163.1 >prot_P-littoralis_Contig74.163.1 ID=prot_P-littoralis_Contig74.163.1|Name=mRNA_P-littoralis_Contig74.163.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=179bp MEGVKILLRAYANPLLSAYGSLPLYMAVYDGHQKVVRELVHWYGTDRCTSback to top mRNA from alignment at P-littoralis_Contig74:644876..645567+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig74.163.1 ID=mRNA_P-littoralis_Contig74.163.1|Name=mRNA_P-littoralis_Contig74.163.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=692bp|location=Sequence derived from alignment at P-littoralis_Contig74:644876..645567+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig74:644876..645567+ >mRNA_P-littoralis_Contig74.163.1 ID=mRNA_P-littoralis_Contig74.163.1|Name=mRNA_P-littoralis_Contig74.163.1|organism=Pylaiella littoralis U1_48|type=CDS|length=537bp|location=Sequence derived from alignment at P-littoralis_Contig74:644876..645567+ (Pylaiella littoralis U1_48)back to top |