mRNA_P-littoralis_Contig74.159.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.159.1
Unique NamemRNA_P-littoralis_Contig74.159.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 1421 bits (3679), Expect = 0.000e+0
Identity = 908/1371 (66.23%), Postives = 968/1371 (70.61%), Query Frame = 2
Query:  377 RCGWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQMDEEYHLLLEEGFVDGTDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGSTPSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDDDKYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVVEXXXXXXXXXXXXXXAEAGEEVQQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAAVTSTTVLLRIGEAFASVSNNGSNSXXXXXXXXXXXXXXXXXKTGRTGIGRILKCRFAGGRRFRPARTRRNGRGFWARGQRRSEGELLVMDDDSARIFGMVLAFLRGGAKSGDQQQTQGRPRRDRRPAGGVFAPGWAPDPAPTARNDSARESEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDEYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGNPVSEEIWRKCEKENYGLYGITVRRAGPTGETIPGNKVTSDKGRRGEVVEAKMDEGYTVFTVEWSEGKSKRSSAYSTEDVLRDRDDNQGVATLGKAKEKMGVFLLSTLCMVNVQVYRFITKNTKLENVSVSSETRPLARDKKLILEKAGITLGRR*RKLVRWTCSWIMKSRSWTPLRTKACGWRWKKNRASK*WD*STTPELT*RVS*EARKI-----SKTSI*LSSTTL*GGRRRPFGWVDPPTWRRP*SIFR*TSFLPESRPKH*RNK-TLSCINPVNRRLLAWG*GVSWRGHG*RIQKSLVTGDLRPASF**GIRC-------------------TGFWIFPGLIIFLCVRQRSIRVML------HQHFATEMRTVKRFLRTVSG--KR-----IWTCLT*SRGYHSVSQEKRSEKGVIENENERIAFGAKFNKGRTHLVGSDECLQGFLLLEELVSRNGIDSFMEKLPDKDDIVKMCNEVLEMNPRKRENEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAQDLYRMKCQDVHGNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLLEKEAEKDLAELRKKGGCTEK 4375
            R  WELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS+ECPMMLHDGYGHFKALIPLRRMPLEF+M+EEYHLLL+EGFVDGTDEEEAVPGTSD ETSDGTDEVPESAVAVDVAGTEASDGGSTPS +SSDSGGGDSDLGARGAFGE+AEGEEVKAATR+SSKRSHPWDDD+YWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEV EXXXXXXXXXXXXXX  AGEE +  +                                                                                                                                                                                  N+SARESE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPD+YTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCL KGNPVSEEIWRKCEKENYGLYGITVRRAGPTGETIPG +VTSDKGRRGE+VEAKMDEGYTVFTVEWSEGKS R SAYSTEDVLRDRDDNQGVATL +AKEKMGVFLL+TLCMVN QVYRFITKNTKLENVSVSSETRPLARDK +      IT GR                              W++ + ++  D     E+T   S E + +      KT   +    +   R    G V      +   +     F+  ++      + T    + ++  +     GV  +    + Q + +     P SF  G+RC                   T  ++    +  L    R   + L        H +  +R    + +  S   KR     ++  +    GYHSVSQEKRSEKGVIENENERIAFGAKFNKGRTHLVGSDECLQGFLLLEELVSRNGIDSFMEKLPDKDDIVKMCNEVLEMNPRKRENEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLA+DLYRMKC+DV+GNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMR  L +  ++      +KGG   K
Sbjct:   67 RAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSQECPMMLHDGYGHFKALIPLRRMPLEFEMEEEYHLLLDEGFVDGTDEEEAVPGTSDSETSDGTDEVPESAVAVDVAGTEASDGGSTPSPESSDSGGGDSDLGARGAFGENAEGEEVKAATRLSSKRSHPWDDDEYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVGEXXXXXXXXXXXXXXXXAGEEERSRVT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNSARESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDKYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLDKGNPVSEEIWRKCEKENYGLYGITVRRAGPTGETIPGTEVTSDKGRRGELVEAKMDEGYTVFTVEWSEGKSNRRSAYSTEDVLRDRDDNQGVATLEEAKEKMGVFLLATLCMVNAQVYRFITKNTKLENVSVSSETRPLARDKTV-----DITKGR---------------------------NHAWEETKKARAVDTLMDNEVTFLDSSEDKGLRVEMEEKTCFEMMGL-INDARAHFTGLVRSTEDFQDKHLAFVNHFVRGAQASFRLGRPTNMASSMIHLSVNELPPGVQAKTL--KEQDTQLYQPGEPTSFSLGMRCVLARARVKDSEEFGDGGSSTCQFLMRYPLYRLLDLSRVDNLPLCPTTEHSSHVSPTLRHRDAYSQAFSSHSKRKADLDVFDII--KGGYHSVSQEKRSEKGVIENENERIAFGAKFNKGRTHLVGSDECLQGFLLLEELVSRNGIDSFMEKLPDKDDIVKMCNEVLEMNPRKRENEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAKDLYRMKCKDVYGNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRSFLRRRRKRTWQSSERKGGVPRK 1223          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D7FVQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ8_ECTSI)

HSP 1 Score: 990 bits (2560), Expect = 0.000e+0
Identity = 630/876 (71.92%), Postives = 647/876 (73.86%), Query Frame = 2
Query:  377 RCGWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQMDEEYHLLLEEGFVDGTDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGSTPSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDDDKYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVVEXXXXXXXXXXXXXXAEAGEEVQQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAAVTSTTVLLRIGEAFASVSNNGSNSXXXXXXXXXXXXXXXXXKTGRTGIGRILKCRFAGGRRFRPARTRRNGRGFWARGQRRSEGELLVMDDDSARIFGMVLAFLRGGAKSGDQQQTQGRPRRDRRPAGGVFAPGWAPDPAPTARNDSARESEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDEYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGNPVSEEIWRKCEKENYGLYGITVRRAGPTGETIPGNKVTSDKGRRGEVVEAKMDEGYTVFTVEWSEGKSKRSSAYSTEDVLRDRDDNQGVATLGKAKEKMGVFLLSTLCMVNVQVYRFITKNTKLENVSVSSETRPLARDKKLILEK 3004
            R  WELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISSEECP MLHDGYGHFKALIPLRRMP       EYHLLLEE FVDGTDEEEAVPGTSDL      DEV ESAVAVDVAGTEASDGGS PSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDD++YWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLET+LAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEV EXXXXXXXXXXXXXX EAGEE +  +                                                                                                                                                                                  N+SARESEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGD+NSDLEDSGYAPSEAGDTD          ECSSTGGETRCEGCEEDFYCELVECPT NAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFS+GGVTDGPDEYTDT+SGSVSGNSKRRRRSAGKK N IPRTSSPRE LMVPKDDQQA+LMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKG+PV EEIWRKCEKENY LYGITVRRAGPTGETIPG KVTSDKGRRGEVVEAKMDEGYTVFTVEWSEGKS R SAYSTEDVLR RDDNQGVATL +AKEKMGVFLL+TLC+VNVQVYRFITKNTKLE VSVSSETRPL+RD K+ + K
Sbjct:  112 RAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPTMLHDGYGHFKALIPLRRMP-------EYHLLLEESFVDGTDEEEAVPGTSDLXXXXXXDEVTESAVAVDVAGTEASDGGSMPSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDDNEYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETTLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVGEXXXXXXXXXXXXXXXEAGEEERSRVT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNSARESEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDKNSDLEDSGYAPSEAGDTDGDNDEDTTSDECSSTGGETRCEGCEEDFYCELVECPTYNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSTGGVTDGPDEYTDTESGSVSGNSKRRRRSAGKKDNCIPRTSSPRELLMVPKDDQQAKLMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGSPVREEIWRKCEKENYALYGITVRRAGPTGETIPGTKVTSDKGRRGEVVEAKMDEGYTVFTVEWSEGKSNRRSAYSTEDVLRTRDDNQGVATLEEAKEKMGVFLLATLCVVNVQVYRFITKNTKLETVSVSSETRPLSRDIKVDIIK 803          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D7FGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY2_ECTSI)

HSP 1 Score: 786 bits (2029), Expect = 1.420e-263
Identity = 512/706 (72.52%), Postives = 526/706 (74.50%), Query Frame = 2
Query:  377 RCGWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQMDEEYHLLLEEGFVDGTDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGSTPSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDDDKYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVVEXXXXXXXXXXXXXXAEAGEEVQQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAAVTSTTVLLRIGEAFASVSNNGSNSXXXXXXXXXXXXXXXXXKTGRTGIGRILKCRFAGGRRFRPARTRRNGRGFWARGQRRSEGELLVMDDDSARIFGMVLAFLRGGAKSGDQQQTQGRPRRDRRPAGGVFAPGWAPDPAPTARNDSARESEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDEYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENK 2494
            R  WELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQ+++EYHLLLEE FVD TDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGS PSAQSS SGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRS PWDD++YWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLET+LAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEV EXXXXXXXXXXXXXXAEAGEE                                                                                                                                                          TQGRP+RDRRPAGGVFAPGWAPDPAP ARNDSARESEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGD+NSDLEDSGYAPSEAGDTD          ECSSTGGETRCEGCEEDFYCELVECPTCNA+YCQDCENDLSSDKERT SRCQRADDDGVGDFS+GGVTDGPDEYTDT+SGSVSGNSKRRRRSAGKK N IPRTSSPRE LMVPKDDQQA+LMLSLYRKAREMERKLAG+ +
Sbjct:  125 RAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQINQEYHLLLEESFVDVTDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGSMPSAQSSGSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSQPWDDNEYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETTLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVGEXXXXXXXXXXXXXXAEAGEE----------------------------------------------------------------------------------------------------------------------------------------------------------TQGRPKRDRRPAGGVFAPGWAPDPAPNARNDSARESEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDKNSDLEDSGYAPSEAGDTDGDNDEDTTSDECSSTGGETRCEGCEEDFYCELVECPTCNAKYCQDCENDLSSDKERTYSRCQRADDDGVGDFSTGGVTDGPDEYTDTESGSVSGNSKRRRRSAGKKDNCIPRTSSPRELLMVPKDDQQAKLMLSLYRKAREMERKLAGKTR 676          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI)

HSP 1 Score: 784 bits (2024), Expect = 6.580e-263
Identity = 527/733 (71.90%), Postives = 537/733 (73.26%), Query Frame = 2
Query:  377 RCGWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQMDEEYHLLLEEGFVDGTDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGSTPSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDDDKYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVVEXXXXXXXXXXXXXXAEAGEEVQQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAAVTSTTVLLRIGEAFASVSNNGSNSXXXXXXXXXXXXXXXXXKTGRTGIGRILKCRFAGGRRFRPARTRRNGRGFWARGQRRSEGELLVMDDDSARIFGMVLAFLRGGAKSGDQQQTQGRPRRDRRPAGGVFAPGWAPDPAPTARNDSARESEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDEYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGNPVS 2575
            R  WELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEF+M+E YHLLL+EGFVDGTDEEEAVPGTSD ETSDGTDEVPESAV VDVAGTEASDGGSTP A+SSDSGGGDSDLGARGAFGE+AE   VKAATRVSSKRSHPWDDD+YWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEV EXXXXXXXXXXXXXX EAGEE +  +                                                                                                                                                                                  N+SARESEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPD+YTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELM SLYRKAREMERKLAGENKRI EVRNLTLLDLTEAASCL KGNPVS
Sbjct:  123 RAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFEMEEGYHLLLDEGFVDGTDEEEAVPGTSDSETSDGTDEVPESAVVVDVAGTEASDGGSTPCAESSDSGGGDSDLGARGAFGENAE---VKAATRVSSKRSHPWDDDEYWDDDANYYSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVGEXXXXXXXXXXXXXXXEAGEEERSRVT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNSARESEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDKYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMFSLYRKAREMERKLAGENKRINEVRNLTLLDLTEAASCLDKGNPVS 675          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: A0A6H5JW77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW77_9PHAE)

HSP 1 Score: 499 bits (1285), Expect = 2.180e-158
Identity = 346/596 (58.05%), Postives = 360/596 (60.40%), Query Frame = 2
Query:  962 YSGCTIVGEDGWTLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAAEVDEAVDEVVEXXXXXXXXXXXXXXAEAGEEVQQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAAVTSTTVLLRIGEAFASVSNNGSNSXXXXXXXXXXXXXXXXXKTGRTGIGRILKCRFAGGRRFRPARTRRNGRGFWARGQRRSEGELLVMDDDSARIFGMVLAFLRGGAKSGDQQQTQGRPRRDRRPAGGVFAPGWAPDPAPTARNDSARESEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASAGDENSDLEDSGYAPSEAGDTDXXXXXXXXXXECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERTCSRCQRADDDGVGDFSSGGVTDGPDEYTDTDSGSVSGNSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGNPVSEEIWRKCEKENYGLYGITVRRAGPTGETIPGNKVTSD-KGRRGEVVEAKMDEGYTVFT 2746
            +SGCTIVGEDGWTLVGKEGRRMGLETSLAFDE              PLFLDHDDETDENEAAEVDEAVD+V E XXXXXXXXXXXXXAEAGEE+QQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAA+T TTVLLRIGEAFAS                                                                                                     GR +RDRRPAGGVFAPGWAPDPAPTA NDSARESE                                     XXXXXXXXXXXXX  AS    +   E    APSEAGDTD          +CSSTGGETR EGCEEDFYCELVECPTCNAQYCQDCENDLSSDKER                                      NSKRRRRSAGKKHNRIP TSSPRESLMVPKDDQQAE +L LYRKAREMERKLAGENKRI EVRNLTLLDLTEAASCL KGNPVSEEIWRKCEKENYGLYGITV RAGPTGETIPG KVTSD +G+  +  +A+  +G T  T
Sbjct:   12 FSGCTIVGEDGWTLVGKEGRRMGLETSLAFDE--------------PLFLDHDDETDENEAAEVDEAVDKVGEDXXXXXXXXXXXXXAEAGEELQQTIVVHEGTTISPWMLAFFLPLLLAVGAALFLVFQAAMTFTTVLLRIGEAFAS-----------------------------------------------------------------------------------------------------GRLKRDRRPAGGVFAPGWAPDPAPTAHNDSARESEX------------------------------------XXXXXXXXXXXXXDAASLDGVSDGEEGLRVAPSEAGDTDGDIDDDTTSDKCSSTGGETRREGCEEDFYCELVECPTCNAQYCQDCENDLSSDKERLW------------------------------------NSKRRRRSAGKKHNRIPTTSSPRESLMVPKDDQQAERILILYRKAREMERKLAGENKRINEVRNLTLLDLTEAASCLDKGNPVSEEIWRKCEKENYGLYGITVHRAGPTGETIPGTKVTSDCRGKLLQRSQAQFTKGATAAT 420          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: A0A6H5JY76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY76_9PHAE)

HSP 1 Score: 420 bits (1079), Expect = 1.340e-128
Identity = 286/585 (48.89%), Postives = 326/585 (55.73%), Query Frame = 2
Query: 2720 MDEGYTVFTVEWSEGKSKRSSAYSTEDVLRDRDDNQGVATLGKAKEKMGVFLLSTLCMVNVQVYRFITKNTKLENVSVSSETRPLARDKKLILEKAGITLGRR*RKLVRWTCSWIMKSRSWTPLRTKACGWRWKKNRASK*WD*STTPELT*RVS*EARKISKTSI*LSSTTL*GGRRRPFGWVDPPTWRRP*SIFR*TSFLPESRPKH*RNK-TLSCINPVNRRLLAWG*GVSWRGHG*RIQKSLVTGDLRPASF**GIRCTGFWIFPGLIIFLCVRQRSIRVMLHQHFATEMRTVKRFLRTVSGKRIWT-------CLT*----SRGYHSVSQEKRSEKGVIENENERIAFGAKFNKGRTHLVGSDECLQGFLLLEELVSRNGIDSFMEKLPDKDDIVKMCNEVLEMNPRKRENEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAQDLYRMKCQDVHGNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLLEKEAEKDLAELRKKGGCTEKALERVAESYTLTPHLGPFDDK 4438
            MDEGY VFTVEWSEGKS R S+YSTEDVLRDRDDNQGVATL +AKEKMGVFLL+TLCMVNVQVYRFITKNTKLENVSVSSETRPLARDKK+      IT GR               + +W            KK++               RV  E +   +    ++       R    G V      +   +     F+  ++      + T    + ++  +     GV  +    + Q + +     P SF  G+RC              V  R+ RV   + F     +  +FL   +  + ++       CL+       GYHSVSQEKRSEKGVIENEN RIAFGAKFNKGRTHLVGSDE                                    +LEMNPRKRENEDHLCPPEFKQR EAIVDELVE NK                                LA+DL RMKC+DV+G DVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLLEKEAE DLAELRKKGGCTEKALERVAES  L P   P   K
Sbjct:    1 MDEGYIVFTVEWSEGKSNRRSSYSTEDVLRDRDDNQGVATLEEAKEKMGVFLLATLCMVNVQVYRFITKNTKLENVSVSSETRPLARDKKV-----DITKGR---------------NHAWEET---------KKDKGL-------------RVEMEEKACFEMMGLINDA-----RAHFTGLVRSTEDFQDKHLALVNHFVRGAQASFRLGRPTNMASSMIHLSVNELPPGVQAKAL--KEQDTQLYQPGEPTSFSLGMRC--------------VLARA-RVKDSEEFGDGGSSTCQFLMRDAYSQAFSSHSKRKACLSVFDIIKGGYHSVSQEKRSEKGVIENENGRIAFGAKFNKGRTHLVGSDE------------------------------------LLEMNPRKRENEDHLCPPEFKQRNEAIVDELVEENK--------------------------------LAKDLCRMKCKDVYGKDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLLEKEAENDLAELRKKGGCTEKALERVAESLLLYPIWVPLTTK 453          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: A0A6H5JVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ6_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 3.520e-109
Identity = 182/196 (92.86%), Postives = 187/196 (95.41%), Query Frame = 2
Query:  377 RCGWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQMDEEYHLLLEEGFVDGTDEEEAVPGTSDLETSDGTDEVPESAVAVDVAGTEASDGGSTPSAQSSDSGGGDSDLGARGAFGEDAEGEEVKAATRVSSKRSHPWDDDKYWDDDANYY 964
            R  WELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEEC MMLHDGYGHFKALIPLRRMPLEF+MDEEY LLL+EGFVDG DEEEAV GTSD ETSDGTDEVPESAVAVDVAGTEASDGGSTPSA+SSDSGGGDSDLGARGAFGEDAEGEEVKAAT VSSKRSHPWDDD+YWD DANY+
Sbjct:  125 RAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECSMMLHDGYGHFKALIPLRRMPLEFEMDEEYRLLLDEGFVDGADEEEAVLGTSDSETSDGTDEVPESAVAVDVAGTEASDGGSTPSAESSDSGGGDSDLGARGAFGEDAEGEEVKAATGVSSKRSHPWDDDEYWDHDANYF 320          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D7FR94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR94_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 4.670e-67
Identity = 138/220 (62.73%), Postives = 148/220 (67.27%), Query Frame = 1
Query:   43 KNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTHCEEIFEAVSGELTDDIKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIVTRAMW-------VGAGDTSSNWISRRKGGVAVGEVPRVARI*DSQARRRPLGPM*CRGPHLLRRVP---HDAARRLRALQGPDSTSKNATGVPDG*RVPFASRRGFRGRHR 672
            KNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMD  GT CEEIFEA+SGELTD + EYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVI TRAMW        G  D  + W+  +  G+      R+ +  D        G     GP      P   HD     +AL       +   GVPD  RVPFASRR FRGRHR
Sbjct:    2 KNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAISGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGL---HGFRIVKHEDGHLVSCDAG-----GPISSEECPMMLHDGYGHFKAL----IPLRRMPGVPDKSRVPFASRREFRGRHR 209          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D7FZH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH0_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.310e-48
Identity = 125/267 (46.82%), Postives = 168/267 (62.92%), Query Frame = 2
Query: 2204 ERTCSRC-QRADDDGVGDFSSGGVTDGPDEYT---DTDSGSVSG--NSKRRRRSAGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGNPVSEEIWRKCEKENYGLYGITVRRAGPTGETIPGNKVTSDKGRRGEVVEAKMDEGYTVFTVEWSEGKSKRSSAYSTEDVLRDRDDNQGVATLGKAKEKMGVFLLSTLCMVNVQVYRFITKNTKLENVSVSSETRPLARDK 2986
            E  C+ C +   D+  G     G  +G  E     DT +G+ SG   SK+ ++   +  NR+ +T S  E+L+VPKDD+QAE + + Y +A E ERKL    K I EVRNLT LD+T A++CL KG PV E+IWRK EKE+YGLYGIT RR     E + G KVTS    +GEVV A+  +GY  FT+EWS+ + K++S Y T DVLRDRDD QGV +LG+A  ++  FL S  CM +VQ + FIT N K+ +   +  TRPL++DK
Sbjct:  811 ELRCAGCLEEESDERAGSVGDAGAVEGDPESDVNGDTCTGATSGVPASKKSKQCRRQVCNRLHKTCSQNEALVVPKDDEQAERIFANYNEANEHERKLTASKKTINEVRNLTYLDITRASTCLDKGLPVGEDIWRKLEKEDYGLYGITTRR-----EEVSGTKVTSAN-NKGEVVVARRVKGYNTFTIEWSDSR-KKNSEYKTGDVLRDRDDGQGVVSLGEATRRIERFLRSARCMADVQFHEFITNNVKVHD---AKSTRPLSQDK 1067          
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.800e-40
Identity = 239/880 (27.16%), Postives = 365/880 (41.48%), Query Frame = 2
Query: 2357 KHNRIPRTSSPRESLMVPKDDQQAELMLSLYRK-AREMERKLAGENKRIKEVRNLTLLDLTEAASCLAKGNPVSE--EIWRKCEKENYGLYGITV---RRAGPTGETIPGNKVTSDKGRRGEVVEAKMDEGYT--VFTVEWSEGKSKRSSAYSTEDVLRDRDDNQGVATLGKAKEKMGVFLLSTLCMVNVQVYRFITKNTKLENVSVSSETRPLARDKKLIL--EKAGITLGRR*RKLVRWTCSWIMKSRSWTPLRTKACGWRWKKNRASK*WD*STTPELT*RVS*EARKISKTSI*LSSTTL*GGR-RRPFGWVDPPTWRRP*SIFR*TSFLPESRPKH*RNKTLS---CINPVNRRLLAWG*GVSWRGHG*RIQKSLVTGDLRPA-SF**GIRC-----------TGF--WI--FPGLIIFLCVRQRSIRVML----HQHFATEMRTVKRFLRT------VSGKRIWTCLT*SRGYHSVSQEKRSEKGVIENENERIAFGAKFNKGRTHLVGSDECLQGFLLLEELVSRNGIDSFMEKLPD----KDDIVKMCNEVLEMNPR----------KRENEDHLCPPEFKQRIEAIVDELVEGNKVTRSDISLLSCSLTVLDSLLTAALRKQDILGQLAQDLYRMKCQDVHGNDVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLLE----------KEAEKDLAELRK---KGGCTEK-----ALERVAESYTLTP-----------------------HLGP----FDDKGRVFTPSQVTGMYKWLGQRTMGLSHFGTHIIRSNHATAVAMYCVRTGLSHDDQAVKDLFALARHGDKQRIRFYT----KVKGDTPNS 4687
            K  R+P  S     L+   DD +    L   RK AR++  ++ G+  +  + R LTL ++ +AA     G+   +    W+K  K +Y LYGITV   R  G   +   G KV    GR G V    +D+     +FTV+W E ++     Y   ++  +  D   V T+G  K ++ +FL   LCMVNVQV R+ T          SSE R   R     L  E A  T+  R  K        +  + + TP   K               +  + PEL        R + K     +   L G +  +  G V          +     F+  ++      +  S   C+ PV+   +               + ++VT   + A     G+R            +G   W+  FP   +F+  R   I  +     +   A++ R     L+T       S +           Y  V+  KRS+    EN  +R+  G K++ GR  L    E  +    L + V  + I  FM+++ +    +D++VKMC EVLE              KR +EDHL P  ++ +I+A+V    +   V  SD++  S  L +LDSL  A LR QD LG LA  +Y      V G  +     +LP   KN +AL+ S  G+VV H K ++ +G YAVM VIGR++MR+ LE          ++A+ +LA+  +   K G  +      A ER    Y  T                         LG     F   G+ +  S +  MYK++G+  +GL  FG +I+RS H T V   C + G+ +DD  +   FALARHG+ +R R Y      +  D PNS
Sbjct:  792 KRGRLPLPSGRHSGLVNFGDDDKLRDQLEGNRKRARDLREEIRGDRAKA-DHRYLTLCEI-KAALMDVDGDTGGDFDTAWKKLGKIDYRLYGITVMGRRLRGKGVQYEKGTKVRDSDGREGVVAGYSLDKETCSGLFTVQWGEKETTEHGLYDVLELAENFGDPD-VVTIGDDKWRVRMFLRGVLCMVNVQVRRYTT----------SSENRVTRRRNLYTLPSESADRTMAMR--KTAYEEIQDVSSASTMTPYEIKIL-------------ESPSDPELV-------RDLEKAGSFFTMLGLDGFKDTQELGLVYVREEFHKRQVEFANHFIRGAQVAWKLGRPTSFESCLVPVSAGGVYTELPSEINCASCDRENTVVTNTCQQARECGLGVRALLVKARVGSVESGCYKWMKHFPLYRVFVDTRPDRIGKINVGTENTSHASQTRKDAALLKTGVDVSATSSQDRAVLKQIGEKYKEVANVKRSDASDYENGLKRVGNGQKYDNGR--LARGAEWKKDLKFLGDSVEESVIAPFMDRIGEDAEGRDEVVKMCMEVLEDKSDATHNKNRYLGKRLDEDHLYPDSYRAQIDAVVGMFWDSG-VDASDLASFSQGLQILDSLTAACLRPQDWLGCLASQVY------VKGTRLIF---VLPPECKNSEALKKSDIGLVVTHAKSDRTKGPYAVMMVIGRRLMRKHLEANYKDARSQVQKAQTNLADAVRNSTKDGVVKARKILAAAERQLTEYAPTESERKNEEDRAKAEKRDQREIGYAELGDKVCTFTAYGKNYDQSMLNDMYKYVGEYYLGLPAFGPNILRSIHVTDVMEVCYKIGIHYDDMRLVRHFALARHGEFERKRAYNGHTMDMVQDDPNS 1624          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LH64_ECTSI0.000e+066.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVQ8_ECTSI0.000e+071.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGY2_ECTSI1.420e-26372.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK60_ECTSI6.580e-26371.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW77_9PHAE2.180e-15858.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY76_9PHAE1.340e-12848.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVJ6_9PHAE3.520e-10992.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR94_ECTSI4.670e-6762.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZH0_ECTSI2.310e-4846.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKZ5_ECTSI2.800e-4027.16PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:632905..638870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size5201
Hectar predicted targeting categoryother localisation
Exons6
Cds size2484
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.159.1prot_P-littoralis_Contig74.159.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 633452..636700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.2905767-UTR-P-littoralis_Contig74:632904..6334511680791534.2905767-UTR-P-littoralis_Contig74:632904..633451Pylaiella littoralis U1_48UTRP-littoralis_Contig74 632905..633451 +
1680791534.391239-UTR-P-littoralis_Contig74:636700..6388701680791534.391239-UTR-P-littoralis_Contig74:636700..638870Pylaiella littoralis U1_48UTRP-littoralis_Contig74 636701..638870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.3115618-CDS-P-littoralis_Contig74:633451..6335141680791534.3115618-CDS-P-littoralis_Contig74:633451..633514Pylaiella littoralis U1_48CDSP-littoralis_Contig74 633452..633514 +
1680791534.3276935-CDS-P-littoralis_Contig74:633660..6339211680791534.3276935-CDS-P-littoralis_Contig74:633660..633921Pylaiella littoralis U1_48CDSP-littoralis_Contig74 633661..633921 +
1680791534.3447387-CDS-P-littoralis_Contig74:634066..6342521680791534.3447387-CDS-P-littoralis_Contig74:634066..634252Pylaiella littoralis U1_48CDSP-littoralis_Contig74 634067..634252 +
1680791534.3571587-CDS-P-littoralis_Contig74:634446..6350911680791534.3571587-CDS-P-littoralis_Contig74:634446..635091Pylaiella littoralis U1_48CDSP-littoralis_Contig74 634447..635091 +
1680791534.3670647-CDS-P-littoralis_Contig74:635235..6357391680791534.3670647-CDS-P-littoralis_Contig74:635235..635739Pylaiella littoralis U1_48CDSP-littoralis_Contig74 635236..635739 +
1680791534.380882-CDS-P-littoralis_Contig74:635875..6367001680791534.380882-CDS-P-littoralis_Contig74:635875..636700Pylaiella littoralis U1_48CDSP-littoralis_Contig74 635876..636700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.159.1

>prot_P-littoralis_Contig74.159.1 ID=prot_P-littoralis_Contig74.159.1|Name=mRNA_P-littoralis_Contig74.159.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=828bp
MMLHDGYGHFKALIPLRRMPLEFQMDEEYHLLLEEGFVDGTDEEEAVPGT
SDLETSDGTDEVPESAVAVDVAGTEASDGGSTPSAQSSDSGGGDSDLGAR
GAFGEDAEGEEVKAATRVSSKRSHPWDDDKYWDDDANYYSGCTIVGEDGW
TLVGKEGRRMGLETSLAFDEASGLYDLTSPNKCQPLFLDHDDETDENEAA
EVDEAVDEVVEDEAAEEVGEDEEAEAEAGEEVQQTIVVHEGTTISPWMLA
FFLPLLLAVGAALFLVFQAAVTSTTVLLRIGEAFASVSNNGSNSADNNKC
SSRRRRAARRRKTGRTGIGRILKCRFAGGRRFRPARTRRNGRGFWARGQR
RSEGELLVMDDDSARIFGMVLAFLRGGAKSGDQQQTQGRPRRDRRPAGGV
FAPGWAPDPAPTARNDSARESEEDGEDGEDSGDADDAASLDGVSDGEESE
EDEEDSDEDSGKGPRGAGGGAGGVASAGDENSDLEDSGYAPSEAGDTDGD
TDEDTTSDECSSTGGETRCEGCEEDFYCELVECPTCNAQYCQDCENDLSS
DKERTCSRCQRADDDGVGDFSSGGVTDGPDEYTDTDSGSVSGNSKRRRRS
AGKKHNRIPRTSSPRESLMVPKDDQQAELMLSLYRKAREMERKLAGENKR
IKEVRNLTLLDLTEAASCLAKGNPVSEEIWRKCEKENYGLYGITVRRAGP
TGETIPGNKVTSDKGRRGEVVEAKMDEGYTVFTVEWSEGKSKRSSAYSTE
DVLRDRDDNQGVATLGKAKEKMGVFLLSTLCMVNVQVYRFITKNTKLENV
SVSSETRPLARDKKLILEKAGITLGRR*
back to top

mRNA from alignment at P-littoralis_Contig74:632905..638870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.159.1 ID=mRNA_P-littoralis_Contig74.159.1|Name=mRNA_P-littoralis_Contig74.159.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5966bp|location=Sequence derived from alignment at P-littoralis_Contig74:632905..638870+ (Pylaiella littoralis U1_48)
ATGATGAGCAAGAAAGAGGGGAGGCAGCTCTGCAAAAACAAGAAGAACGT CCCGGCGACCCCGAAGCTTTGCGACAACAGCCGCGTGTACTTCACGACTG AGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCGGTCTGTGTGCT CTTCTCGGCGTCATCGCTGTGGCGATGGACGCCGCAGGAACCCATTGTGA GGAGATTTTCGAAGCCGTCAGCGGCGAGCTCACGGACGACATAAAGGAGT ACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCGGCGACCAGTTC GCCTTCAAGGACGGTGAAGAGCTGGCTAGCTTCGACGACATCGTCCACGA CCCGATGTGGGTGATTGTGACGAGGGCGATGTGGGTGGGAGCTGGTGACA CTTCATCCAACTGGATATCTCGACGGAAGGGCGGTGTGGCTGTTGGCGAA GTTCCTCGGGTTGCACGGATTTAGGATAGTCAAGCACGAAGACGGCCACT TGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCCGAAGAGTGCCCCATG ATGCTGCACGACGGCTACGGGCACTTCAAGGCCCTGATTCCACTTCGAAG AATGCCACTGGTAAGTCTCGTCTGTTTTTAATTGTATGTGTGCGCGCGTA CATGATATGATCCGTGATATTTTTGTTTCGAATTTAAAAACATATTTGAA GCTCACACCGCTCACGTTTGGCCAACGCATTGTTTTGTTTTGCCCCCCCC CTCCAGGAGTTCCAGATGGATGAAGAGTACCATTTGCTTCTCGAAGAGGG TTTCGTGGACGGCACAGATGAGGAGGAGGCCGTTCCGGGGACGTCGGATT TGGAGACTTCGGACGGCACCGACGAGGTCCCTGAATCGGCTGTCGCGGTA GATGTAGCCGGCACGGAGGCGTCTGACGGTGGATCGACGCCGAGCGCCCA ATCGTCTGATTCCGGTGGGGGCGACAGTGACCTGGGGGCACGTGGAGCGT TTGGCGAAGATGCTGAGGTGCGCGTTGTTCGTTAATTCTCCTTGTGTAAA ATTCTCCATAAAAAATAGTCGTCTAGTGGTCTGAACCACCGCATCGTTGT TGACAGACAGCAGCCGTAGCACTGAACGTATCCATGGTCTCATTTCGTTG ATTGAAAAATAGGGAGAAGAGGTCAAAGCGGCTACCCGTGTGTCCAGCAA GAGGAGCCACCCATGGGACGACGACAAGTATTGGGATGACGACGCCAACT ACTACTCGGGTTGCACCATAGTTGGCGAAGACGGGTGGACTCTCGTCGGC AAGGAAGGTCGGCGAATGGGGTTGGAGACAAGCTTGGCCTTCGACGAAGT GAGTCCCTGATACCCCAACCTGAAATCCCAACCTGAACACCCAACGTGAA AACCCAACCTGAAATACCAACCTGAAAACCCAACCTGAAAACCCAACCTG AAAACCCAACCTGAAACCCCAACCTGAAAACCCAACCTGAAAACCCAACC TGAAAACCCAACCTGAAAACCCAATGCTTTTCGTGAACACAGGCCTCGGG TTTGTACGACCTCACCAGTCCGAACAAATGCCAGCCTTTGTTCCTAGACC ACGATGACGAAACCGATGAGAACGAAGCAGCGGAGGTGGACGAGGCTGTG GACGAGGTGGTCGAAGATGAAGCCGCAGAGGAGGTGGGCGAGGACGAGGA GGCTGAGGCTGAGGCTGGAGAGGAGGTGCAGCAGACTATCGTCGTACACG AAGGAACCACGATTTCCCCCTGGATGCTGGCTTTCTTTCTACCGCTTCTG CTCGCCGTTGGGGCCGCTCTTTTCCTGGTGTTTCAGGCAGCCGTGACCTC TACCACCGTACTCCTTCGCATCGGCGAGGCATTCGCATCAGTCAGCAACA ACGGCAGCAACTCTGCCGACAACAACAAATGCAGCTCTCGTCGGCGGCGT GCAGCTCGTCGTCGCAAGACTGGTCGCACGGGGATCGGCAGGATTCTGAA ATGCAGATTTGCAGGAGGGAGACGCTTCCGTCCTGCAAGGACTCGTCGCA ACGGAAGAGGTTTCTGGGCACGTGGTCAGAGGAGGAGTGAAGGCGAGCTT CTTGTGATGGACGATGATTCTGCACGCATCTTCGGAATGGTGCTGGCGTT TCTGCGGGGAGGAGCGAAGTCGGGTGACCAACAACAGGTGTGTGCGTGTA CCAGTTGATTTGTGTTCTTCAAGAGGTACGTATTTTCATCACGCGACAAA ACGGCAAGTCAAACAAGACACTTAATTTCTCCGAATGCTTGCTTGGTCGT TCCATCCCCGTCGTCCCATCCTTTCTCGCAGACACAGGGGAGGCCGAGAA GGGACAGGCGTCCAGCAGGGGGGGTATTTGCCCCCGGTTGGGCACCCGAT CCTGCCCCAACCGCGCGCAACGACAGCGCGAGAGAGTCCGAGGAGGATGG TGAAGATGGTGAAGACTCCGGGGATGCAGATGATGCCGCGTCTCTGGATG GAGTCAGCGATGGCGAAGAGTCTGAAGAAGATGAAGAGGACTCCGATGAA GACTCCGGTAAAGGGCCTCGTGGTGCTGGTGGGGGAGCGGGTGGTGTGGC GTCAGCGGGCGATGAAAACTCCGATTTAGAGGACTCCGGGTATGCTCCCA GCGAGGCCGGCGACACCGATGGAGACACCGACGAAGATACCACCAGCGAC GAGTGTTCCTCCACCGGCGGGGAAACTCGCTGCGAGGGGTGCGAAGAAGA CTTCTATTGTGAACTGGTGGAGTGCCCCACGTGCAATGCGCAGTATTGTC AGGACTGCGAGAACGACTTGTCTTCTGACAAAGAGGTGAGCTGAACTCGT GTTAGTATTGAGCGAGTGAGGGCCGAAACCAAACTATATGCGCACAAAAA CTTCAAAGAAAACCCCGACCAAGCTTATTTTTTCCTGTTTTGTTGTTCCT TGTTTTTTCACCGAACCGCAGCGAACGTGTTCTAGGTGTCAGCGAGCGGA CGATGATGGTGTTGGTGATTTTTCGAGTGGGGGGGTCACTGATGGACCGG ATGAGTACACCGACACAGATAGTGGTAGCGTCTCTGGAAACTCCAAGCGA CGTCGTCGATCTGCGGGGAAGAAACATAATCGCATTCCAAGAACTTCTAG CCCGAGAGAGTCGTTGATGGTGCCTAAAGACGACCAGCAGGCGGAACTTA TGTTAAGTCTATACCGCAAAGCCCGCGAGATGGAACGGAAACTTGCAGGA GAAAACAAGAGAATCAAGGAGGTAAGGAACCTCACCCTCCTCGACCTCAC GGAAGCAGCAAGCTGCTTGGCCAAGGGCAATCCCGTAAGCGAAGAGATCT GGCGAAAGTGCGAAAAGGAGAACTACGGCCTGTACGGTATCACCGTGCGT CGAGCTGGGCCAACCGGTGAGACGATTCCGGGGAACAAGGTTACGTCAGA CAAGGGTAGACGGGGGGAGGTCGTGGAGGCAAAGATGGATGAAGGATACA CCGTGTTCACCGTCGAGTGGTCGGAAGGCAAGAGCAAGAGAAGCAGCGCA TATTCTACGGAGGACGTGCTTCGTGATCGCGATGATAACCAGGGCGTGGC GACACTTGGGAAGGCGAAGGAGAAAATGGGGGTGTTTCTACTTTCAACCT TGTGTATGGTCAACGTCCAGGTTTACCGATTTATTACCAAGAACACCAAG TTGGAGAATGTGTCAGTGTCAAGTGAGACACGCCCCCTGGCCCGGGATAA AAAGTTGATATTAGAAAAGGCCGGAATCACGCTTGGGAGGAGATGAAGAA AGCTCGTGCGGTGGACATGCTCATGGATAATGAAGTCACGTTCTTGGACT CCTCTGAGGACAAAGGCTTGCGGGTGGAGATGGAAGAAAAATCGTGCTTC GAAATGATGGGATTGATCAACGACGCCAGAGCTCACTTAACGGGTCTCGT GAGAAGCACGGAAGATTTCCAAGACAAGCATCTAGCTTTCGTCAACCACT TTGTGAGGGGGGCGCAGGCGTCCTTTCGGCTGGGTCGACCCACCAACATG GCGTCGTCCATGATCCATCTTTCGGTGAACGAGCTTCCTCCCGGAGTCCA GGCCAAAACATTGAAGGAACAAGACACTCAGTTGTATCAACCCGGTGAAC CGACGTCTTTTAGCCTGGGGATGAGGTGTGTCTTGGCGAGGGCATGGGTG AAGGATTCAGAAGAGTTTGGTGACGGGGGATCTTCGACCTGCCAGTTTCT GATGAGGTATCCGTTGTACAGGCTTCTGGATCTTTCCCGGGTTGATAATC TTCCTCTGTGTCCGACAACGGAGCATTCGAGTCATGCTTCACCAACACTT CGCCACAGAGATGCGTACAGTCAAGCGGTTTCTTCGCACAGTAAGCGGAA AGCGGATTTGGACGTGTTTGACATAATCAAGGGGGTATCATTCTGTGTCG CAAGAGAAGCGGTCCGAAAAAGGTGTGATAGAGAATGAAAACGAGAGGAT CGCATTTGGTGCGAAGTTCAATAAAGGCAGGACTCACTTGGTGGGAAGCG ATGAATGTCTGCAAGGGTTTCTTTTACTTGAAGAACTCGTGTCTCGCAAT GGGATAGACTCGTTCATGGAGAAGTTACCCGACAAGGATGATATTGTCAA GATGTGCAATGAAGTGCTTGAGATGAACCCACGCAAGCGCGAGAACGAGG ATCATCTTTGTCCACCGGAGTTCAAACAGAGGATTGAAGCGATCGTCGAT GAACTGGTAGAAGGAAACAAGGTAACCAGATCGGATATTTCGTTGCTCAG TTGCTCTTTAACGGTGTTGGATTCTCTGCTTACCGCTGCCCTTCGAAAGC AAGACATTTTGGGACAGCTTGCTCAAGATTTGTACCGAATGAAGTGTCAG GACGTTCATGGCAACGATGTTGCTATTACCCGGTGTCTTCTTCCCCGTTA CTTCAAAAACAAGAAGGCACTCGAGAATTCTACGTGTGGAGTAGTTGTGA ACCATACAAAACATGAGAAGTGTGAGGGGGCGTATGCGGTTATGGCAGTC ATTGGGAGGAAGGTGATGCGAAGGCTTCTTGAGAAGGAGGCGGAAAAGGA CTTGGCAGAGCTCAGAAAGAAAGGGGGGTGTACCGAGAAAGCCTTAGAGA GGGTGGCCGAGTCGTATACTCTTACACCCCATTTGGGTCCCTTTGACGAC AAAGGTCGTGTCTTCACACCCAGTCAAGTGACGGGTATGTACAAATGGTT GGGGCAGCGCACAATGGGCCTTTCGCATTTTGGCACTCACATCATCCGCA GTAATCACGCGACGGCGGTGGCGATGTACTGTGTGAGGACAGGGCTGTCA CACGATGACCAGGCGGTGAAGGATTTGTTTGCTTTGGCGAGACACGGTGA TAAGCAGAGGATTCGGTTTTACACGAAAGTCAAAGGTGATACGCCAAATT CGTGTGATTTCCTGACTAATTTAAGTGGTGCCCTTCCCTCACTTCGTCGC CTCGGGGAGGGGGGGGGAGTCAAGACTTCTGAGAAAAAGGTGGCGTCACT GAGTGATGTTGAAGAAGTAGGTCTTTCGGGTCTCTTTGCCTTCGAGGATG CCGAGTTCGACAAATCCGGGGCGTTTGCACGTGGGAAAACCGGTGATGGG TGATGGGGCATATAGAAAGTTGGATGTGGTCGAGATGGATGATGAAGAGA AGGACTTGGTTAGGCAGGAGCGAAAGGCTACCAGGAAAGCTAATATTGCG ATTGAAGAAAAACGGGAGAAAGAGGCCAAGACGGCCCAGTATGAAAATAA GGTGGACACCGGTGTGAAGTCGGGTGGTCGGAAGAAGGGGGGAGTTCGCG CTGACAGGCTTGAGTATCGCAAGAGTGCGTTTGCCAAAATAAATCAGTTG GTTTTGAGAGCAAGTAAACTGAAAGAGTTGGGAAAGGGCAAGAAGCCCAA GCGGATGACGTTGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig74:632905..638870+

>mRNA_P-littoralis_Contig74.159.1 ID=mRNA_P-littoralis_Contig74.159.1|Name=mRNA_P-littoralis_Contig74.159.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2484bp|location=Sequence derived from alignment at P-littoralis_Contig74:632905..638870+ (Pylaiella littoralis U1_48)
ATGATGCTGCACGACGGCTACGGGCACTTCAAGGCCCTGATTCCACTTCG
AAGAATGCCACTGGAGTTCCAGATGGATGAAGAGTACCATTTGCTTCTCG
AAGAGGGTTTCGTGGACGGCACAGATGAGGAGGAGGCCGTTCCGGGGACG
TCGGATTTGGAGACTTCGGACGGCACCGACGAGGTCCCTGAATCGGCTGT
CGCGGTAGATGTAGCCGGCACGGAGGCGTCTGACGGTGGATCGACGCCGA
GCGCCCAATCGTCTGATTCCGGTGGGGGCGACAGTGACCTGGGGGCACGT
GGAGCGTTTGGCGAAGATGCTGAGGGAGAAGAGGTCAAAGCGGCTACCCG
TGTGTCCAGCAAGAGGAGCCACCCATGGGACGACGACAAGTATTGGGATG
ACGACGCCAACTACTACTCGGGTTGCACCATAGTTGGCGAAGACGGGTGG
ACTCTCGTCGGCAAGGAAGGTCGGCGAATGGGGTTGGAGACAAGCTTGGC
CTTCGACGAAGCCTCGGGTTTGTACGACCTCACCAGTCCGAACAAATGCC
AGCCTTTGTTCCTAGACCACGATGACGAAACCGATGAGAACGAAGCAGCG
GAGGTGGACGAGGCTGTGGACGAGGTGGTCGAAGATGAAGCCGCAGAGGA
GGTGGGCGAGGACGAGGAGGCTGAGGCTGAGGCTGGAGAGGAGGTGCAGC
AGACTATCGTCGTACACGAAGGAACCACGATTTCCCCCTGGATGCTGGCT
TTCTTTCTACCGCTTCTGCTCGCCGTTGGGGCCGCTCTTTTCCTGGTGTT
TCAGGCAGCCGTGACCTCTACCACCGTACTCCTTCGCATCGGCGAGGCAT
TCGCATCAGTCAGCAACAACGGCAGCAACTCTGCCGACAACAACAAATGC
AGCTCTCGTCGGCGGCGTGCAGCTCGTCGTCGCAAGACTGGTCGCACGGG
GATCGGCAGGATTCTGAAATGCAGATTTGCAGGAGGGAGACGCTTCCGTC
CTGCAAGGACTCGTCGCAACGGAAGAGGTTTCTGGGCACGTGGTCAGAGG
AGGAGTGAAGGCGAGCTTCTTGTGATGGACGATGATTCTGCACGCATCTT
CGGAATGGTGCTGGCGTTTCTGCGGGGAGGAGCGAAGTCGGGTGACCAAC
AACAGACACAGGGGAGGCCGAGAAGGGACAGGCGTCCAGCAGGGGGGGTA
TTTGCCCCCGGTTGGGCACCCGATCCTGCCCCAACCGCGCGCAACGACAG
CGCGAGAGAGTCCGAGGAGGATGGTGAAGATGGTGAAGACTCCGGGGATG
CAGATGATGCCGCGTCTCTGGATGGAGTCAGCGATGGCGAAGAGTCTGAA
GAAGATGAAGAGGACTCCGATGAAGACTCCGGTAAAGGGCCTCGTGGTGC
TGGTGGGGGAGCGGGTGGTGTGGCGTCAGCGGGCGATGAAAACTCCGATT
TAGAGGACTCCGGGTATGCTCCCAGCGAGGCCGGCGACACCGATGGAGAC
ACCGACGAAGATACCACCAGCGACGAGTGTTCCTCCACCGGCGGGGAAAC
TCGCTGCGAGGGGTGCGAAGAAGACTTCTATTGTGAACTGGTGGAGTGCC
CCACGTGCAATGCGCAGTATTGTCAGGACTGCGAGAACGACTTGTCTTCT
GACAAAGAGCGAACGTGTTCTAGGTGTCAGCGAGCGGACGATGATGGTGT
TGGTGATTTTTCGAGTGGGGGGGTCACTGATGGACCGGATGAGTACACCG
ACACAGATAGTGGTAGCGTCTCTGGAAACTCCAAGCGACGTCGTCGATCT
GCGGGGAAGAAACATAATCGCATTCCAAGAACTTCTAGCCCGAGAGAGTC
GTTGATGGTGCCTAAAGACGACCAGCAGGCGGAACTTATGTTAAGTCTAT
ACCGCAAAGCCCGCGAGATGGAACGGAAACTTGCAGGAGAAAACAAGAGA
ATCAAGGAGGTAAGGAACCTCACCCTCCTCGACCTCACGGAAGCAGCAAG
CTGCTTGGCCAAGGGCAATCCCGTAAGCGAAGAGATCTGGCGAAAGTGCG
AAAAGGAGAACTACGGCCTGTACGGTATCACCGTGCGTCGAGCTGGGCCA
ACCGGTGAGACGATTCCGGGGAACAAGGTTACGTCAGACAAGGGTAGACG
GGGGGAGGTCGTGGAGGCAAAGATGGATGAAGGATACACCGTGTTCACCG
TCGAGTGGTCGGAAGGCAAGAGCAAGAGAAGCAGCGCATATTCTACGGAG
GACGTGCTTCGTGATCGCGATGATAACCAGGGCGTGGCGACACTTGGGAA
GGCGAAGGAGAAAATGGGGGTGTTTCTACTTTCAACCTTGTGTATGGTCA
ACGTCCAGGTTTACCGATTTATTACCAAGAACACCAAGTTGGAGAATGTG
TCAGTGTCAAGTGAGACACGCCCCCTGGCCCGGGATAAAAAGTTGATATT
AGAAAAGGCCGGAATCACGCTTGGGAGGAGATGA
back to top