mRNA_P-littoralis_Contig74.146.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE) HSP 1 Score: 131 bits (330), Expect = 3.340e-33 Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 2
Query: 2 MQVGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRS-EGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
M VGHTH+KI QIFSR + G+KG N+F R++ +L+ASY VP+ TL NEGNF L GR +P IT +RAFR+ + +G V V VK MH + G R+G PPH +FIG PP ++ D PPYELK V
Sbjct: 54 MMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQ-DAPPYELKEV 189
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.150e-24 Identity = 57/138 (41.30%), Postives = 80/138 (57.97%), Query Frame = 2
Query: 8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
VGHTHIKI Q+FSR ++G G ++F RS+ + + SYK +P++V TL N GNFK + K+ I +IT +RAFR+ + G V V K MHS W T G + PH +F + P ++PP+ELK V
Sbjct: 80 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLDLTATGGAQVAANPHRLFRFAAPTF-DNVPPFELKTV 216
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.640e-23 Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query: 8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
VGHTHIKI Q+FSR ++G G ++F RS+ + + SYK +P++V TL N GNFK + K+ I +IT +RAFR+ + G V V K MHS W G T G + PH +F + P ++PP+ELK V
Sbjct: 192 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTV 328
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.920e-22 Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 2
Query: 8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
VGHTHIKI Q+FSR ++G G ++F RS+ + SYK +P++V TL N GNFK + K+ I ++T++ AFR+ + G V V K MHS W G T G + PH +F + P ++PP+ELK V
Sbjct: 247 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTV 383
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 4.310e-20 Identity = 58/164 (35.37%), Postives = 81/164 (49.39%), Query Frame = 2
Query: 8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM------------------------------IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
VGHTHIKI Q+FSR ++G G ++F RS+ + + SYK +P++V TL N GNFK + K+ I +IT +RAFR+ + G V V K MHS W G T G + PH +F + P ++PP+ELK V
Sbjct: 80 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTV 242
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.580e-18 Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 2
Query: 8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPVK 412
+GHTHIKI Q+FSRL +G G ++F + + + + SYK +P++V L N GN K + K+ I +I +RAFR+ + G V V VK MHS W G T G R P+ +F + P+ ++ P+ L P K
Sbjct: 80 LGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLNLRKIRNIATFRAFRVGKVAGEVSVWVKRFMHSDAWLGLTATGGARVDAIPYRLFRFAAPSF-DNVLPFNLLPCK 217 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig74.146.1 >prot_P-littoralis_Contig74.146.1 ID=prot_P-littoralis_Contig74.146.1|Name=mRNA_P-littoralis_Contig74.146.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp MQVGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLback to top mRNA from alignment at P-littoralis_Contig74:606987..607554- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig74.146.1 ID=mRNA_P-littoralis_Contig74.146.1|Name=mRNA_P-littoralis_Contig74.146.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=568bp|location=Sequence derived from alignment at P-littoralis_Contig74:606987..607554- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig74:606987..607554- >mRNA_P-littoralis_Contig74.146.1 ID=mRNA_P-littoralis_Contig74.146.1|Name=mRNA_P-littoralis_Contig74.146.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig74:606987..607554- (Pylaiella littoralis U1_48)back to top |