mRNA_P-littoralis_Contig74.146.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.146.1
Unique NamemRNA_P-littoralis_Contig74.146.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.340e-33
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 2
Query:    2 MQVGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRS-EGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
            M VGHTH+KI QIFSR + G+KG N+F R++   +L+ASY  VP+   TL NEGNF   L GR   +P IT +RAFR+ +  +G V V VK  MH  +  G  R+G      PPH +FIG PP ++ D PPYELK V
Sbjct:   54 MMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQ-DAPPYELKEV 189          
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.150e-24
Identity = 57/138 (41.30%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
            VGHTHIKI Q+FSR ++G  G ++F RS+   + + SYK +P++V TL N GNFK   +   K+    I +IT +RAFR+ +  G V V  K  MHS  W   T  G  +    PH +F  + P    ++PP+ELK V
Sbjct:   80 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLDLTATGGAQVAANPHRLFRFAAPTF-DNVPPFELKTV 216          
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.640e-23
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
            VGHTHIKI Q+FSR ++G  G ++F RS+   + + SYK +P++V TL N GNFK   +   K+    I +IT +RAFR+ +  G V V  K  MHS  W G T  G  +    PH +F  + P    ++PP+ELK V
Sbjct:  192 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTV 328          
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.920e-22
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
            VGHTHIKI Q+FSR ++G  G ++F RS+     + SYK +P++V TL N GNFK   +   K+    I ++T++ AFR+ +  G V V  K  MHS  W G T  G  +    PH +F  + P    ++PP+ELK V
Sbjct:  247 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTV 383          
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.310e-20
Identity = 58/164 (35.37%), Postives = 81/164 (49.39%), Query Frame = 2
Query:    8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM------------------------------IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPV 409
            VGHTHIKI Q+FSR ++G  G ++F RS+   + + SYK +P++V TL N GNFK   +   K+                              I +IT +RAFR+ +  G V V  K  MHS  W G T  G  +    PH +F  + P    ++PP+ELK V
Sbjct:   80 VGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTV 242          
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.580e-18
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 2
Query:    8 VGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTLRNEGNFKDFLMGRYKM----IPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPVK 412
            +GHTHIKI Q+FSRL +G  G ++F + +   + + SYK +P++V  L N GN K   +   K+    I +I  +RAFR+ +  G V V VK  MHS  W G T  G  R    P+ +F  + P+   ++ P+ L P K
Sbjct:   80 LGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLNLRKIRNIATFRAFRVGKVAGEVSVWVKRFMHSDAWLGLTATGGARVDAIPYRLFRFAAPSF-DNVLPFNLLPCK 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE3.340e-3349.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE4.150e-2441.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE1.640e-2342.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE4.920e-2240.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE4.310e-2035.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE2.580e-1837.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:606987..607554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.0819333-CDS-P-littoralis_Contig74:606986..6073501680791534.0819333-CDS-P-littoralis_Contig74:606986..607350Pylaiella littoralis U1_48CDSP-littoralis_Contig74 606987..607350 -
1680791534.0945542-CDS-P-littoralis_Contig74:607506..6075531680791534.0945542-CDS-P-littoralis_Contig74:607506..607553Pylaiella littoralis U1_48CDSP-littoralis_Contig74 607507..607553 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791534.106823-UTR-P-littoralis_Contig74:607553..6075541680791534.106823-UTR-P-littoralis_Contig74:607553..607554Pylaiella littoralis U1_48UTRP-littoralis_Contig74 607554..607554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.146.1prot_P-littoralis_Contig74.146.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 606987..607553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.146.1

>prot_P-littoralis_Contig74.146.1 ID=prot_P-littoralis_Contig74.146.1|Name=mRNA_P-littoralis_Contig74.146.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MQVGHTHIKIYQIFSRLALGVKGLNVFARSEQVAILKASYKAVPMNVPTL
RNEGNFKDFLMGRYKMIPSITRWRAFRLLRSEGNVGVCVKEVMHSRDWSG
PTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPVK
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mRNA from alignment at P-littoralis_Contig74:606987..607554-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.146.1 ID=mRNA_P-littoralis_Contig74.146.1|Name=mRNA_P-littoralis_Contig74.146.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=568bp|location=Sequence derived from alignment at P-littoralis_Contig74:606987..607554- (Pylaiella littoralis U1_48)
CATGCAAGTTGGACACACACACATAAAAATCTATCAGATTTTTTCCAGGT ACGGATAGATCCCTGATCGAAATTGATAACCCTAAGTGCTGCTTCGTTGC TGTCAAGTCACATCAAAACTTTAGGATACCACACGTTTGCTTTCGTCCTA TTCCTTCGAGAGCCCTCCTAGAGTTGACTTCCTTCCGTCTGCTCGGTGTG GCAGGTTGGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAG CAGGTGGCTATACTCAAAGCTTCGTATAAAGCAGTTCCCATGAACGTCCC CACGCTTCGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACA AAATGATTCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCG GAAGGCAACGTTGGCGTCTGCGTGAAAGAAGTCATGCATTCACGCGATTG GTCTGGGCCGACTCGTGACGGAAAGCCCAGGGCGGGCACTCCTCCGCACA GTATGTTCATCGGGTCGCCGCCCAATCTTCGTGGCGACATCCCCCCGTAC GAGCTGAAACCTGTCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:606987..607554-

>mRNA_P-littoralis_Contig74.146.1 ID=mRNA_P-littoralis_Contig74.146.1|Name=mRNA_P-littoralis_Contig74.146.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig74:606987..607554- (Pylaiella littoralis U1_48)
ATGCAAGTTGGACACACACACATAAAAATCTATCAGATTTTTTCCAGGTT
GGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAGCAGGTGG
CTATACTCAAAGCTTCGTATAAAGCAGTTCCCATGAACGTCCCCACGCTT
CGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACAAAATGAT
TCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCGGAAGGCA
ACGTTGGCGTCTGCGTGAAAGAAGTCATGCATTCACGCGATTGGTCTGGG
CCGACTCGTGACGGAAAGCCCAGGGCGGGCACTCCTCCGCACAGTATGTT
CATCGGGTCGCCGCCCAATCTTCGTGGCGACATCCCCCCGTACGAGCTGA
AACCTGTCAAG
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