mRNA_P-littoralis_Contig74.88.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig74.88.2
Unique NamemRNA_P-littoralis_Contig74.88.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig74.88.2 vs. uniprot
Match: D7FQY4_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 1.390e-65
Identity = 117/156 (75.00%), Postives = 123/156 (78.85%), Query Frame = 1 
Query:    1 MDMDDDXXXXXXXXXXXXFTCDVGELLFGWWIVNTCRALYVSCLPVILLGVARHWVFHIATSTAASSKGTSASRTTALLDANGFESSSGQVRSSIGRWPRFVWTMVSTAGVALSLLSMLVIMTYNSGLFLAVLAGEAIGFWVWGNHSLPEAMRGCH 468
            M+MDDD            FTCDVGEL+FGWW VNTC A Y+SC+PVILL VARHW F IATSTA SSK  SASR TALLD NGFE+SSG  R  I RW RFVWTMVST G ALSLLSMLV+MTYNSGLFLAVL GEAIGF VWGNHSLPEAMRGCH
Sbjct:    1 MEMDDDMSSMNMSFS---FTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAIATSTATSSKRGSASRNTALLDGNGFENSSG--RPPINRWTRFVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFGVWGNHSLPEAMRGCH 151
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BLAST of mRNA_P-littoralis_Contig74.88.2 vs. uniprot
Match: A0A8H2ZHV1_9SACH (Copper transport protein n=1 Tax=Kazachstania barnettii TaxID=61262 RepID=A0A8H2ZHV1_9SACH)

HSP 1 Score: 53.5 bits (127), Expect = 9.970e-5
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:   76 LLFGWWIVNTCRALYVSCLPVILLGVARHWVFHIATSTAASSKGTSASRTTALLDANGFESSSGQVRSSIGRWPRFVWTMVSTAGVALSLLSMLVIMTYNSGLFLAVLAGEAIGFWVWGNH--SLPEAMRG--CH 468
            ++F WW + T     +SCL  I++G+A ++ +        +S+ T+++R +   + +G         S I R  +F  T+     V  S + MLV MTYN  L LAV+ G A+G++ W +   SLP   R   CH
Sbjct:   40 VVFNWWHIRTRLQFIISCL--IVVGLATYYEYLKFRFVKYASETTASNRVSTTTNGSGV--------SQIARREKFYRTIHYGIQVGFSFMLMLVFMTYNGWLMLAVVVGAALGYYRWNDSLVSLPMEQRSLACH 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.88.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQY4_ECTSI1.390e-6575.00Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A8H2ZHV1_9SACH9.970e-531.11Copper transport protein n=1 Tax=Kazachstania barn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig74contigP-littoralis_Contig74:381437..387011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog59689.fgenesh2_kg.8__1869__AT5G59030.1
PFAMsCtr
Model size1711
Max annot lvl35493|Streptophyta
KEGG koko:K14686
KEGG TC1.A.56.1
KEGG Pathwayko01524,ko04978,map01524,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0003006,GO:0003674,GO:0005215,GO:0005375,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0007275,GO:0007276,GO:0008150,GO:0008324,GO:0009555,GO:0009987,GO:0015075,GO:0015318,GO:0016020,GO:0019953,GO:0022412,GO:0022414,GO:0022622,GO:0022857,GO:0022890,GO:0030001,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0034220,GO:0035434,GO:0044703,GO:0046873,GO:0046915,GO:0048229,GO:0048232,GO:0048235,GO:0048364,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051704,GO:0055046,GO:0055085,GO:0098655,GO:0098660,GO:0098662,GO:0099402
Exons4
Evalue2.9e-05
EggNOG OGsKOG3386@1|root,KOG3386@2759|Eukaryota,37VSX@33090|Viridiplantae,3GJRW@35493|Streptophyta,3HUK0@3699|Brassicales
Ec32 ortholog descriptionhigh affinity copper transporter
Ec32 orthologEc-09_003290.1
Descriptioncopper transporter
Cds size471
COG categoryP
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791531.9479654-UTR-P-littoralis_Contig74:381436..3826761680791531.9479654-UTR-P-littoralis_Contig74:381436..382676Pylaiella littoralis U1_48UTRP-littoralis_Contig74 381437..382676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791531.961815-CDS-P-littoralis_Contig74:382676..3827411680791531.961815-CDS-P-littoralis_Contig74:382676..382741Pylaiella littoralis U1_48CDSP-littoralis_Contig74 382677..382741 -
1680791531.9756563-CDS-P-littoralis_Contig74:383053..3830991680791531.9756563-CDS-P-littoralis_Contig74:383053..383099Pylaiella littoralis U1_48CDSP-littoralis_Contig74 383054..383099 -
1680791531.9880648-CDS-P-littoralis_Contig74:383300..3833851680791531.9880648-CDS-P-littoralis_Contig74:383300..383385Pylaiella littoralis U1_48CDSP-littoralis_Contig74 383301..383385 -
1680791531.999081-CDS-P-littoralis_Contig74:386736..3870111680791531.999081-CDS-P-littoralis_Contig74:386736..387011Pylaiella littoralis U1_48CDSP-littoralis_Contig74 386737..387011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig74.88.2prot_P-littoralis_Contig74.88.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig74 382677..387011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig74.88.2

>prot_P-littoralis_Contig74.88.2 ID=prot_P-littoralis_Contig74.88.2|Name=mRNA_P-littoralis_Contig74.88.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MDMDDDMSMDMTMNMSFTFTCDVGELLFGWWIVNTCRALYVSCLPVILLG
VARHWVFHIATSTAASSKGTSASRTTALLDANGFESSSGQVRSSIGRWPR
FVWTMVSTAGVALSLLSMLVIMTYNSGLFLAVLAGEAIGFWVWGNHSLPE
AMRGCH*
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mRNA from alignment at P-littoralis_Contig74:381437..387011-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig74.88.2 ID=mRNA_P-littoralis_Contig74.88.2|Name=mRNA_P-littoralis_Contig74.88.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5575bp|location=Sequence derived from alignment at P-littoralis_Contig74:381437..387011- (Pylaiella littoralis U1_48)
ATGGACATGGATGACGACATGAGCATGGACATGACCATGAATATGAGCTT
CACATTCACTTGCGATGTTGGCGAGCTGTTATTCGGATGGTGGATCGTCA
ACACGTGTCGCGCACTGTATGTCAGCTGTTTGCCTGTAATTCTCCTGGGC
GTCGCAAGACACTGGGTCTTCCATATTGCCACCTCTACCGCCGCTTCCTC
GAAAGGGACCTCTGCTTCAAGGACCACTGCCCTCCTCGATGCAAATGGTT
TCGAGAGTTCAAGTGGCCAAGTACGGTGAGTGCTCTTAAGCCGTGCATCC
TGTTGTGGCAACTACCTCGTTGAGTGTACATTCGCACTATCCGCGACAGA
AATCTCTCCGCGTTCTCCTCAAACTGAACCTGTGATTTCGTGATTTCAAG
TCTGTCGCCGGTCGCAGGTGTGTGTGTGATGGATATGCTGCTGCTGTACT
TGTACACTTTACAACAGCTCTACCTGCTTAGCCTTATTCTTGCCGCTCAA
ACATTCACGAAGAAGGTACAAGTATTCATCATTGACATGCGCCAAGCTGA
TGGAACGTGTTCGTCGACTGCAGTGCCCATGTGTGTCTTCAACACCAGTT
TGTGGTTGACCTCTGTACTTAGTACAAACTGAGGGTTTTCAGAGAACTTC
AAGGGTTTTATTATACATAGGTGTCATTGTTGTGATGCAGTTAAGGGTTT
GAAGCTCATGCCTGTACCATCAAAAGACGGACGCCGAAACTCAGGAGCGA
TGGTCGGGACCGTGTTTTTTCTGATCTGAGTATTTTTAAAAATTAATGGA
CGTTGCCACAAACAAACGTGGCTCGCTTCGTCTACTCGCCATGCCGTGTT
GAATCAAACACAAAAATTTGTGGACGACGTGGCTTCGGTCCTATCGACTG
CTGTAAAGGCCTGTGCCCCCCGGGCTACGGGCAAGAAATCGCCTGGCCGC
TGCTGCGCCAGTGAAGACGCGCAGCAGGAGATTCAAGATGGCTCGGGAGA
ACAGGGAGGAGGCCCGGAAGCAGCAGCGGGGTGCGCCAGAAGACCCCACC
TTCGGAAGGAACCTGAAGGCGGCCGCGAAGCAACTTGACCACCTGAGAGC
CAGCGCCGTGAATCACATTTCGAGGAATTTGTGAGCTAGCTCGAAAAGAA
AAGCCGTGAAGGAGACCAAGCCGGCTTTCATAATCACGTCAAGGGGCTGG
ACGGGACGGGAAGAGTGTTTTCACTGCACAGAACATCAAGGACGGGGATG
GCAATCTGTTGCGGACCCCACACTCATCCGCAGCGATAGGCCAGGTGGTT
CCATCCGCTACAAGCACCAAGTCACCGACCCTTGACTCGCGAGTGGTCAA
TAAGGTCAGGCATTGGCCTACATGTGTACCGCTAGACGACGTACCTTCGG
TCCTTGAGGTCGAGTACGCAGTCTGGGGGATGATCAACAAGAACGCTTTA
GGCCCGCACGAGTTCCCAGCGGAACTTAATACTTCGAAGTATGGTTTTGC
CCGACGGGGATCAAGTGCTCCCACGATAGTTCACTCTGTCACTGGAATAA
ATGGCAGTCGTTGTGGGTGCCACAACAATCGAAAGACGCATAGATGAAAG
CGATGCACAAGAAGGCCAAGACGAAGTGCGGTATTTACGGAGGTATCTTC
TTGGGACACACGCTGGTAAGAGGGACGATTACTGCGAATGACTGAGCGTT
CTGCCCGAGGAGCAGAGCAGTTTTTGACCAAACCATTCAACTGCCGACAT
AATGTTCGCGGTTCGACGCCTTCACGAGTTGGCGCAGAGGAAGCCGATAC
CATTGTATGCCTGCTGCATCGATCTCACGAAAGCGTACAACTCCGTCGAC
CGGGGACTACTGTGGTCGGTGCCCAAGCAGCTCAGAGTGTCTCTCACGGT
ACTTTTGGCCATCCGCCAGTTACACGACAACACGAGAGTATGCGTGCAGA
AGGACGATGGAGCTTGCTCCGACTGACACGATATGGAACCGGAAGTCCGG
CAGGGGTGTAATCTGGTACCGCTGCTGTTCAACCTTTTCTTCGCTGCAAT
GCTCATGGTTGCCTTCGACGAGCTCCGCGAAGCGGACACTGTTAAGGTGA
AAAGGATGGCGACGGAGGGGAAGGTGAAAAACGCTTATCTGGCAGAGGCA
ATGGAATCTATCTGGAGCATGCTGTACGCCGACGATGTGGGTGTTGTCTA
TTGATCGCCGGGAGGCCTCGAGAAGAGTACGTCAATCATTGTGCGTGTGG
CTAGGCGGGTTGGCTGTTGGTTTCAGAATCCAAGACAGAGAACACGTGCA
TGCTCGCTCAAGGAATGAAGGCGTCTTCGTTCAAGGTCAATGCTGCTGGG
GATGGTGTCCAATCGAAAGGAAAAGTTTGCATATTTTGGGGGGGGGGGGG
GGGGATATCTGCGAGGACGGAAGCATCGAAAGTGAGGTCAACCGCCAAGT
ACAGCGAGCGCACGACTGCTTTCAGCGCAACAGCCAGGCCATGTTCACCG
TCGGGGAGATGGATCAAGGTAGGAGGCCTCCCAAGCCGAAGTCATGGAGA
CCCTCCTCTATGGGTGCGTCATGTGGAACCTGAAGCCAATCCACTTCAGC
AAACTTCGGGCAGCTCACCACCTCTTCCTCTTTTGCTGCATCGGAGGGCA
AAAGAGGTATAGAACGGGCCGCCTTATGTCGTACGATGAGGCCATCACCA
AGGCGGGTTGTGACGAGTGCATTCAAGCCGCTGAGCGCACAAGTCGACTA
TACTTCGCAGGATTTGTCGCGCGTATGGGAGATGACAAGCAATCATTGCC
ATACGGGTTGATTGGAGGGGCGCGAGGTCCTTGGGGGGGCAAGATCTTGA
ATGGCTGAAGCGACCACAGGAGGATATCACGGCGTTCGGCGTCGCTACCA
ACAAGAAGGGGTGGGAGGCGATAGCCAAGAGAGCGGAGGGATTGCGCATG
ACCGAGGTGGATGTGCTATGACTCATGGACGAGTGGCACGAGGATAGGGA
GACGCAAAAGAGACATATCGATTGAAGAGGGAAAAGGGCGCAGTCCAGGG
ACAGGCCATGGCCAAGAGAGGGAGAAAGGACGAAGAAGATCAACGAGAGG
AAAAATACGGGGGCCCGAGTGGGTTAGGCATGCCCCCCGATCAAAAGGGG
GGGATAAGCCCCCCACGCAGCGTGGTTCAAAAAGCTGTATAGCAGAAGTT
GCGGAGTGGTTTTGCTGCTAATAAAGCTGCAGGGTAGAAAAAGCAACCCA
AGCTGCTGGGTAGGAGGATTGAAAAAGCTGTGCCGCAGAAGTCGCGGAAA
AGTGTTGCTGCTAAAGCGGCAGGGCAGAAGCAGCAGTGAGCGGTAGTACG
AGTAACAGGAGGCATGAGTGCGGTCGAGGACGCAAGCGTGAGCAGGCAGA
CCTTGTGGCGCGACATGTTTGCGACTGACTGCATGTACACGCATGTGTCC
CCTTTTCTTTTTTCTCTGTCTTTTATTATTTCCCTCGGCTTTTTTTCGTC
TTCTCTTTTAGAACAACTACCTCTTTTTCTTACCACCCAGCCTACGCTAT
CAGACATATTTTTCATCTCTGAAGCATACGGTACCAACAAAGGCTAATCC
TCGATCTTCCGTTTGGCTTTTAGCAGGAGCTCTATCGGCCGATGGCCCCG
ATTCGTTTGGACCATGGTATCCACAGCAGGCGTCGCACTCTCCCTCCTCT
CAATGCTGGTGGTGAGTCTCTAGACGCCCTAGCACCCACACACAGGCATT
GTGCACGTAAGGGATCTCTGTAGCTGGAGCACATCGTATTATAGGCTTTT
TCGCTGTTATTGTCCACTGGGTCATGTGTCTCATGTGTCCGAAGTTTTTG
TGCCTCTCTTTGCTCGCCGGGTGTCCTCTGACTCCGTCGTTCTGTATTAC
CTTCTTTGGCAGATAATGACGTACAACAGTGGTTTATTCCTCGCCGTGCT
CGCCGGAGGTGAGAGAACGGACTCTTTCGGTCTACAGTTTCACTCTTGTA
CAGAGACGAGAACGAAACGTATTGCCGTGCTGCAGCCACATCGTATGGAC
ATCATTTGAATGTTTTCGTTCTCTTGTACGAAATCGTATCTCACCGCATC
ACCCCCATCCTTTTGCGCTCAACACGCCGCTCGACCGATGCCCGCCCTCC
CTTCCTCACTGCTAGTGGAATTACCCCATCCGAAATATCTATATCCTCAT
CGTATTTCTGTTCCGTCTGTCGTTGCACCCGACGACGCCGACCGCAACGG
CAAAAAAATCAATTGCACAGAGGCAATTGGGTTTTGGGTGTGGGGCAATC
ACTCTCTACCGGAAGCGATGCGAGGCTGCCACTGACATGAGGTTGGTGGA
CATCCTCCACCAGCACACCCTTGTACATATGGTTGAGCGGAAGACGATCG
AGCTGACTCGATGGAAGCACGGGAGGGGAGACCGTTGGCATCGGAAGCGC
TTGCCAGAATTTAAGAAGCAAGCGGCGCGGGAGGCACTTCAAGGAAATCC
AGGGGATTGGAACGGCGAGCAAGAGTGAAAACGCGTCGACAATTACGCTG
CGCGGCCACATTTTGCCCCGATTTGCACAAAAAGGCCTCAAAACAAGGCC
TCTGCTCGACACGTTGTTGCGTTTGACATCGGTACTCTGCCTGAGAGCGC
TCAAGCGGGCTGCGCTTTTTTGTTTCGGACCGCAGTTTGTGCCAGGCGCC
AAAAACAGTCAACAGTTCGTCCCCACAACAGACTACCGCGCCAATATATA
TCGCAGTCAAGGTAAATATCGTAAATTCCCTTGAGCATGCTTGGGTTTCT
AATGTAAGATGTCTGGTGATGAGTGTCCACTACAATGTCTGTTCCGTTTT
GACGGTGCGTAGAACCAGCGCGTTTGCGAATTGTTGCCTTTCGTTCATGT
ATTTAGTGTTTAGCTGGTTTCATGTGTTGTTGCGTCGGAATCACACGTAC
ACGTACAAACGCGTACGTTCTCTGAGGTACAAATACGAAAAAAGCTCGAT
ACATTGTACACTATTTCCAGAAAGGCAAAAAAAGTTATTTTCGACTACGG
AAATGGACGCCTTCGAACGCAGTACAAAACAGCGAGTGGAACCTCTCCGT
CAGCACAAGGCAGGATATATATAGGTTGTTGGGAATATCGGATGTTTCCT
GTTCATCACTGAAACCGGTCGCCCCGGTTGGTAGGTTCTGTCATTCTCTT
CCAGTCACAACATGAGTTCGAAACTCCGTCGAAGGGCTAAATTCTGTTAT
TTTCTCAGACCTTTATGATTTTGTTTCACGACAGCAGATCCACGACCAAA
GATTACCCGATATACGCAGCCACTCTGTCACTACCTCAAACCGTAGTTTC
GTAGCTCGGTTGTTGTTCTCGACTACCTCGGCATGGATCGACGCCAAAGC
GCGCGGGTGTACGTGCGTTCGACGTGACGCCGAATATGTTTAGTTCTGTG
GCGCCGTTCAAGAGAACCCTCTCCCGACGATTACACGTCACTTGATCATG
CCGACCATTACACATGACTATCCGGACAAATTGATGTACAACTCGACTTT
CGATTCATTTTTTATTTTGCTCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig74:381437..387011-

>mRNA_P-littoralis_Contig74.88.2 ID=mRNA_P-littoralis_Contig74.88.2|Name=mRNA_P-littoralis_Contig74.88.2|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig74:381437..387011- (Pylaiella littoralis U1_48)
ATGGACATGGATGACGACATGAGCATGGACATGACCATGAATATGAGCTT
CACATTCACTTGCGATGTTGGCGAGCTGTTATTCGGATGGTGGATCGTCA
ACACGTGTCGCGCACTGTATGTCAGCTGTTTGCCTGTAATTCTCCTGGGC
GTCGCAAGACACTGGGTCTTCCATATTGCCACCTCTACCGCCGCTTCCTC
GAAAGGGACCTCTGCTTCAAGGACCACTGCCCTCCTCGATGCAAATGGTT
TCGAGAGTTCAAGTGGCCAAGTACGGAGCTCTATCGGCCGATGGCCCCGA
TTCGTTTGGACCATGGTATCCACAGCAGGCGTCGCACTCTCCCTCCTCTC
AATGCTGGTGATAATGACGTACAACAGTGGTTTATTCCTCGCCGTGCTCG
CCGGAGAGGCAATTGGGTTTTGGGTGTGGGGCAATCACTCTCTACCGGAA
GCGATGCGAGGCTGCCACTGA
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