mRNA_P-littoralis_Contig1185.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1185.12.1
Unique NamemRNA_P-littoralis_Contig1185.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.360e-60
Identity = 173/461 (37.53%), Postives = 246/461 (53.36%), Query Frame = 1
Query:   37 KLASLKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEY----EEDLQMIFKE-----LAPRERDSGAEEPTAIQRGRLAPAAVSRRPASKWE--REKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGV-VATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCPPPGQRAPPA 1362
            KL+ LK +G +    F  +KA  K G  V ++    + + W L+  G   EEE+    + + Q I        L P++       P++      A AA  R+ A +W+  R++A+Q          +II +F +GSG PIERTR  G  E V+G+    P P   +P   CP+CP  F+  Q   IHV  +H  A    G RL ++L +      + PW   G G  W    D  TG A F +Q+ R   +D   DGF TD   K +  RGA+ RKRY +R KA  + +LR  Q+ AA++ ++  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA KWA    + KRRRSN KN+SVE+RLPKI RF ++ R L+Q  P   RAP A
Sbjct:   17 KLSELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRWKQARDRAAQ-----GVLGGNIINAFARGSGKPIERTRG-GVTEHVSGINFPPPAPERRIP---CPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQ-PWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGF-TDR--KVKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQ-EPVRYRAPEA 463          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 3.530e-59
Identity = 153/450 (34.00%), Postives = 235/450 (52.22%), Query Frame = 1
Query:   37 KLASLKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEYEEDLQMIFKELAPRERDSGAEEPTAIQRGRLAPAAVSRR---------PASKWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGV-VATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVWVA--DFKTGRAEFGIQQRTTP-ID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCP 1335
            KL++LK KG +   Q+ ++K   ++G  +T +  +     W+LR  G   EE++   +      +        +  PT      +A +A  +R         PA++    +  +    AA    +I  SF  GSG P+ RTR  G  E V+ V  A+P P    P VQCP+CP  F+  Q   +H+   H  A   +G+RL ++L +  A    +PWE  G G  +    D  TG A F +Q +  P ID   DGF   +      RRGA  R RY +R KA  I++LR  ++    + +  H+ P+Q+      VP++++ KW  DE  IV  AA++V   LL K   + WFP AE+ L+  ++A+R+K LKVSTLWL     + +++H+P D R  +F+PS+RW  KWA    +V RRRSN K +S+E+RLP+I RF ++ R L++ P
Sbjct:   13 KLSALKAKGMILERQYEVIKKHVREGNSLTSEHWEAFDVAWDLRSSGVFSEEDWTTQVDGDISGI-------NSARPTLSSEHAVASSASGKRXXXXXXXXXPAARGAPNRGKRQREDAAKGSLNIYNSFAIGSGQPVLRTRA-GVQEYVSSVSFASPAP---APRVQCPHCPTTFVNAQGLGLHMKTNHSTANVFQGQRLQRMLGD-DAKGDVLPWERAGPGRCYHVKIDGITGAASFVLQPKRVPNIDLESDGFTPAE--PRSARRGAAKRNRYDFRFKAHVIQQLRILEEDRQALWQAEHLSPMQYLETHMKVPRTNISKWVKDEDEIVAFAADEVKQTLLAKQQPKRWFPAAERELFNRFLARRKKKLKVSTLWLTVTFRKLLEEHHPTDSRAAVFRPSFRWMQKWAKRHKVVPRRRSNLKAKSIEERLPRIQRFHRRFRQLIEEP 448          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 8.040e-57
Identity = 171/461 (37.09%), Postives = 241/461 (52.28%), Query Frame = 1
Query:   37 KLASLKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEY----EEDLQMIFKE-----LAPRERDSGAEEPTAIQRGRLAPAAVSRRPAS--KWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGVV-ATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCPPPGQRAPPA 1362
            KL+ LK +G +    F  +KA  K G  V ++    + + W L   G   EEE+    + + Q I        L P++       P++      A AA  R+ A   K  R++A+Q          +II +F +GSG PIERTR  G  E V+G+    P P   +P   CP+CP  F+  Q   IHV  +H  A    G RL ++L +      + PW   G G  W    D  TG A F +Q+ R   +D   DGF TD   K +  RGA+ RKRY +R K   + +LR  Q+ AA++ ++  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ L  +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA KWA    + KRRRSN KN+SVE+RLPKI RF ++ R L+Q  P   RAP A
Sbjct:   17 KLSELKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLEQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQ-----GVLGGNIINAFARGSGKPIERTRG-GVTEHVSGITFPPPAPERRIP---CPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQ-PWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGF-TDR--KVKETRGAVKRKRYDFRFKTHVVIQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLSNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQ-EPVRYRAPEA 463          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5KBV2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV2_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 6.680e-55
Identity = 162/447 (36.24%), Postives = 230/447 (51.45%), Query Frame = 1
Query:   37 KLASLKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEYEEDLQMIFKELAPRERDS-GAEEPTAIQRGRLAP-----AAVSRRPASKWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGV-VATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCP 1335
            KLA LK +G +    F  +K   K G  V ++    + S W L+ +G  +E E+   +    + +    R S  +++  +  RG  AP     AA +     K +R K ++   S  +   +I  +F  GSG PIERTR  G  E V+G+    P P +      C +CP   +  Q   IHV  +H  A    G RL ++L + +     +PWEG G G  W    D  TG A F +Q+ R   +D   DGF  D E K    RGA  R+RY YR KA A+ +LR  +  AA++ ++    PLQ+      V  S++ KWA DE  IV  AA+ V   LL K   + WFP+AE+  Y +++ +R++ LKVSTLWL T   + V+  YP D R   F+ S+RWA KWA   ++ KR R N KN SVE+RLPKI RF +  R L+Q P
Sbjct:  242 KLAELKGRGLILDRHFETIKTHVKAGNSVAKERWDAIESAWGLKQNGIFDEGEWIAQIDGEIQGITSSTRLSLSSQQDASSARGAAAPSQHPPAAAADTARRKVDRGKHARERASKGTLGDNIWNAFSIGSGQPIERTRG-GVKEFVSGISFPPPAPES---RRSCLHCPMTIVNEQGLGIHVRTQHSSANMSNGVRLRRMLWK-NLEGRVLPWEGAGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM-DRETKET--RGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQSKRWFPEAEKRPYKMFVERRKRKLKVSTLWLTTTCQKLVRDMYPGDQRAAAFRASFRWARKWAERHNLSKRGRINLKNRSVEERLPKIQRFHRLFRKLLQEP 680          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5JIJ5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.660e-53
Identity = 162/447 (36.24%), Postives = 230/447 (51.45%), Query Frame = 1
Query:   37 KLASLKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEYEEDLQMIFKELAPRERDS-GAEEPTAIQRGRLAP-----AAVSRRPASKWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGV-VATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCP 1335
            KLA LK +G +    F  +K   K G  V ++    + S W L+ +G  +E ++   +    + +    R S  +++  +  RG  AP     AA +     K EREK ++   +  +    I  +F  GSG PIERTR  G  E V+G+    P P +      CP+CP  FM  Q   IHV  +H  A    G RL ++L + +     +PWE  G G  W    D  TG A F +Q+ R   +D   DGF  D E K    RGA  R+RY YR KA A+ +LR  +  AA++ ++    PLQ+      V  S++ KWA DE  IV  AA+ V   LL K   + WFP+AE+ LY +++ + +  LKVSTLWL     + V + YP D R   F+ S+RWA  WA  R++ KRRR+N K +SVE+RLPKI RF +  R  +Q P
Sbjct:   17 KLAELKGRGLILDRHFETIKTHVKAGNSVAKERWDAIESAWGLKKNGIFDEGQWIAQIDGEIQGITSSTRLSLPSQQDASSARGAAAPSQHPPAAAAGTARRKVEREKHARERAAKGTLGGSICNAFSIGSGQPIERTRG-GVKEFVSGISFPPPAPES---RRSCPHCPMTFMNEQGLGIHVRTQHSSATMSNGVRLRRMLRK-NLGGRVLPWEEAGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM-DRETKEA--RGASKRRRYDYRFKANAVNQLRILEDNAADLCKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFPEAEKRLYKMFVEQCKGKLKVSTLWLTITFRELVGEMYPGDQRAAAFRASFRWARNWAKRRNLSKRRRTNLKFKSVEERLPKIRRFHRLFRKFLQEP 455          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5J6R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R3_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 4.970e-50
Identity = 160/448 (35.71%), Postives = 228/448 (50.89%), Query Frame = 1
Query:   37 KLASLKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEYEEDLQMIFKELAPRERDSGAEEPTAIQRGRLAPAAVSRRPASK---WEREKASQLSRSAASAHQHII----TSFVKGSGGPIERTRNDGSVELVAGV-VATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCP 1335
            KLA LK +G +    F  +K   K G  V ++    + S W L+ +G  +E E+   +    + +    R   + +  A Q G        R+   +   W+R  A QL R+  ++H  +      S +      IERT   G  E+V+G+    P P +      CP+CP  F+  Q   IHV  +H  A    G RL + +L  +     +PWE  G G  W    D  TG A F +Q+ R   +D   DGF  D E K    RGA  R+RY YR KA A+ +LR  +  AA+I ++    PLQ  A    V  S++ KWA DE  IV  AA+ V   LL K   + WFP+AE+ LY +++ +R++ LKVSTLWL     + V++ YP D R   F+ S+RWA KWA   ++ KRRR+N KN+SVE+RLPKI RF +  R L+Q P
Sbjct:   17 KLAQLKGRGLILDRHFETIKTHVKAGNSVAKERWDAIESAWGLKQNGIFDEGEWIAQIDGEIQGITSSTRLPLSSQQXARQ-GESCERHFGRQHLQRVLDWQRTTAPQL-RATDTSHGSLNPLHGNSALSHRTEQIERTLG-GVKEVVSGISFPPPAPES---RRSCPHCPMTFVKEQGLGIHVRTQHSNANMSNGVRL-RPMLRKNLEGRVLPWEEAGPGRCWHVKVDDATGAASFVLQRKRFLGLDLESDGFM-DRETKET--RGAPKRRRYDYRFKANAVNQLRILEDNAADIWKEEERTPLQCLADRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFPEAEKRLYKMFVERRKRKLKVSTLWLTITFRKLVREMYPGDQRAAAFRASFRWARKWAKRHNLSKRRRTNLKNKSVEERLPKIQRFHRLFRKLLQEP 454          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.850e-49
Identity = 122/293 (41.64%), Postives = 168/293 (57.34%), Query Frame = 1
Query:  502 VQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCPPPGQRAPPA 1362
            + CP+CP  F+  Q   IHV  +H  A    G RL ++L +      + PW   G G  W    D  TG A F +Q+ R   +D   DGF    E K +  RGA+ RKRY +R KA  + +LR  Q+ AA++ ++  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA KWA    + KRRRSN KN+SVE+RLPKI RF ++ R L+Q  P   RAP A
Sbjct:   62 IPCPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQ-PWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT---ERKVKEARGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQ-EPVRYRAPEA 349          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5K6P0_9PHAE (C2H2-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P0_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.960e-48
Identity = 164/457 (35.89%), Postives = 228/457 (49.89%), Query Frame = 1
Query:   49 LKHKGALTTEQFSLLKAKAKDG-LVTEQVLQNLSSLWNLRCDGSVEEEEY----EEDLQMIFKE-----LAPRERDSGAEEPTAIQRGRLAPAAVSRRPAS--KWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGV-VATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCPPPGQRAPPA 1362
            LK +G +    F  +KA  K G  V ++    + + W L+  G   EEE+    + + Q I        L P++       P++      A AA  R+ A   K  R++A+Q          +II +F +GSG PIERTR  G +E V+G+    P P   +P   CP+CP  F+  Q   IHV  +H  A    G RL ++L +      + PW   G G  W    D  TG A F +Q+ R   +D   DGF TD   K +  RGA+  K Y +R KA  + +LR  Q+ AA++ ++  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K                 +  KRRK LKVSTLWL     + V++++P+D R   F  S+RWA KWA    + KRRRSN KN+SVE+RLPKI RF ++ R L+Q  P   RAP A
Sbjct:   29 LKQRGLILDRHFETIKAHVKAGNSVAKERWDAIENAWGLKQTGVFNEEEWITQIDGEAQGITSSTRPSFLTPQDAGGARGAPSSHPPPATAAAAGKRKVADRGKQARDRAAQ-----GVLGGNIINAFARGSGKPIERTRG-GVIEHVSGINFPPPAPERRIP---CPHCPMTFVNEQGLGIHVKTQHSNANMSNGLRLQRMLGKTPKGYVQ-PWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGF-TDR--KVKETRGAVKCKLYDFRFKAYVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAK-----------------HQPKRRK-LKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQ-EPVRYRAPEA 453          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5KWF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWF5_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 5.590e-48
Identity = 147/410 (35.85%), Postives = 213/410 (51.95%), Query Frame = 1
Query:  142 LSSLWNLRCDGSVEEEEYEEDLQMIFKELAPRERDS-GAEEPTAIQRGRLAP-----AAVSRRPASKWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVELVAGVVATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCP 1335
            + S W L+ +G  +E E+   +    + +    R S  +++  + +RG  AP     AA +     K +R K ++   +  +   +I  +F  GSG PIERT   G V+  A  ++ P P        CP+CP  F+  Q   I+V  +H  A    G RL ++L + +     +PW   G G  W    D  TG A F +Q+ R   +D   DGF  D E K    RGA  R+RY  R KA A+ +LR  +  AA + ++    PLQ+      V  S++ KWA DE  IV  AA+ V   LL K   + WFP+AE  LY + + +R++ LKVST+WL T   + V+  YP D R   F+ S+RWA KWA   ++ KRRR+N KN+SVE+RLPKI RF +  R L+Q P
Sbjct:    7 IESAWGLKQNGIFDEGEWIAQIDGEIQGITSSTRLSLSSQQDASSERGAAAPSQHPPAAAAGTARRKVDRGKHARERAAKGTLGGNICNAFSIGSGKPIERTC--GGVKEFASGMSFP-PPARESRRSCPHCPITFVNEQGLGIYVRTQHSSANMSNGVRLRRMLRK-NLEGRVLPWGEAGPGRCWHVKVDDATGAASFVLQRKRFLDLDLESDGFM-DRETKET--RGAPKRRRYDNRFKANAVNQLRILEDNAANLWKEEERTPLQYLEDRLRVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFPEAETRLYKMSVERRKRKLKVSTVWLTTTFRKLVRDMYPGDQRAAAFRASFRWARKWAKRHNLSKRRRTNLKNKSVEERLPKIQRFHRLFRKLLQEP 409          
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Match: A0A6H5KCI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI3_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.810e-47
Identity = 120/317 (37.85%), Postives = 173/317 (54.57%), Query Frame = 1
Query:  415 PIERTRNDGSVELVAGVVATPLPTTGVPTVQ----CPYCPKKFMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVWVADFK--TGRAEFGIQQ-RTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRWAGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCP 1335
            PIER R  G  EL++G+   P      PT +    CP+CP  F+  Q   IHV  +H  A    G RL ++L +     + +PWE  G G  W   F   TG A F +++ R   +D   DGF    + K +  RGA  R+RY +R KA A+ +LR  +  A ++ ++    PL F      +P S++ KWA +E  +V  AA+ V   LL K   + WFP+AE+ LY  ++ +R++ LKVSTLWL     + V++  P D R   F+ S+RWA KWA   ++  RRR+N KN+SVE+R PKI RF +  R L+Q P
Sbjct:  109 PIERARG-GVKELISGISFPP------PTPESRRSCPHCPMTFVNEQGLGIHVRTQHSSANMSNGVRLRRMLRKDEQG-SVLPWEAAGPGRCWHVKFDHATGTASFVLRRKRFLDLDLDSDGFM---DRKPKDTRGAPKRRRYDFRFKAHAVNQLRILEDNAEDLWKEEQRTPLLFFEDRLKIPYSNIVKWAKNEKELVAAAADDVKKSLLAKQQPKRWFPEAEKRLYKGFVERRKRKLKVSTLWLTITFRKLVREMNPGDQRAASFRASFRWARKWAKRHNLSNRRRTNLKNKSVEERFPKIQRFHRLFRELLQEP 414          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFX9_9PHAE1.360e-6037.53C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
D8LRF1_ECTSI3.530e-5934.00C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K4R4_9PHAE8.040e-5737.09C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBV2_9PHAE6.680e-5536.24C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIJ5_9PHAE1.660e-5336.24C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J6R3_9PHAE4.970e-5035.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDV1_9PHAE2.850e-4941.64C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6P0_9PHAE2.960e-4835.89C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KWF5_9PHAE5.590e-4835.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI3_9PHAE2.810e-4737.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1185contigP-littoralis_Contig1185:16866..18595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0Q3
PFAMsDDE_1
Model size1418
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.45e-59
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size1413
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.8446136-CDS-P-littoralis_Contig1185:16865..178641680789497.8446136-CDS-P-littoralis_Contig1185:16865..17864Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 16866..17864 -
1680789497.8587449-CDS-P-littoralis_Contig1185:18178..185921680789497.8587449-CDS-P-littoralis_Contig1185:18178..18592Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 18179..18592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.8689327-UTR-P-littoralis_Contig1185:18592..185951680789497.8689327-UTR-P-littoralis_Contig1185:18592..18595Pylaiella littoralis U1_48UTRP-littoralis_Contig1185 18593..18595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1185.12.1prot_P-littoralis_Contig1185.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1185 16866..18592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1185.12.1

>prot_P-littoralis_Contig1185.12.1 ID=prot_P-littoralis_Contig1185.12.1|Name=mRNA_P-littoralis_Contig1185.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=471bp
MDAAAVLALKSKLASLKHKGALTTEQFSLLKAKAKDGLVTEQVLQNLSSL
WNLRCDGSVEEEEYEEDLQMIFKELAPRERDSGAEEPTAIQRGRLAPAAV
SRRPASKWEREKASQLSRSAASAHQHIITSFVKGSGGPIERTRNDGSVEL
VAGVVATPLPTTGVPTVQCPYCPKKFMCTQASAIHVGMRHPQAKKDEGER
LLKLLLEPSASVTKMPWEGVGMGLVWVADFKTGRAEFGIQQRTTPIDDGF
ATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGP
LQFAAQVAGVPQSDLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKA
EQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLMFKPSWRW
AGKWANERSIVKRRRSNSKNESVEQRLPKIGRFLKKLRALMQCPPPGQRA
PPAPAPAAAGGSGASAAGGSG
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mRNA from alignment at P-littoralis_Contig1185:16866..18595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1185.12.1 ID=mRNA_P-littoralis_Contig1185.12.1|Name=mRNA_P-littoralis_Contig1185.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1730bp|location=Sequence derived from alignment at P-littoralis_Contig1185:16866..18595- (Pylaiella littoralis U1_48)
GTCATGGACGCTGCGGCTGTGCTTGCGCTGAAATCGAAGCTAGCGTCGTT GAAACACAAAGGGGCTTTGACCACTGAGCAGTTCAGTCTTCTAAAGGCGA AAGCGAAGGATGGGTTGGTAACTGAGCAAGTGTTGCAGAATCTCTCCAGT CTCTGGAACCTGCGGTGTGATGGCTCCGTCGAAGAAGAAGAGTATGAGGA GGACCTGCAGATGATCTTCAAAGAGCTGGCACCCAGAGAGAGAGACTCGG GGGCGGAAGAACCCACCGCTATCCAACGGGGCCGTCTCGCTCCTGCTGCA GTTTCTCGTCGCCCGGCCTCGAAGTGGGAGAGGGAAAAAGCGTCACAGCT GTCAAGATCCGCCGCTTCTGCACATCAGCACATCATTACCTCCTTCGTCA AAGGATCCGGCGGGCCGGTGAGTTTGCAAAATAAAAGCTCGGCTGCCGCA TAGTGCCTGCTGTACGGCGGAATTTTCAGTCGCGTAGCTGCGCCGCAGAC GTTGAAACATGAAAAAAGTGTGTTTCAATCGACCACTGTAGTCTACAGCA GTACCACTCACACCATGATGCAAGAGGTTAGCTATGCTTCTATTTTTCCG TATGTTTTCTCACCGCGTGCACTCCGTAGCATCAAGTCTGAACGCTTGCG CTGCTTTGTTCTCCGTCTAACCGCTGCTATCCGAATGCTGTGTCACTACT GGGTTTCTCCTTTCGATCTCGTCTGTCGCAGATTGAGCGCACTCGGAACG ATGGGTCTGTTGAGCTTGTAGCGGGTGTTGTGGCCACCCCACTGCCCACC ACTGGCGTACCGACTGTCCAGTGCCCCTACTGCCCCAAGAAGTTCATGTG CACCCAGGCATCCGCGATCCACGTCGGAATGCGCCACCCTCAAGCCAAGA AGGACGAGGGGGAGCGGCTTCTAAAGTTGCTGCTCGAACCGTCAGCATCT GTCACCAAGATGCCATGGGAGGGAGTGGGTATGGGGCTGGTTTGGGTCGC TGATTTCAAGACGGGGCGCGCGGAGTTCGGCATTCAGCAGAGAACCACAC CTATCGACGATGGGTTCGCCACTGACGACGAGGGCAAGGGAGAGGGACGC CGCGGTGCGCTGGTGCGAAAACGGTACAGCTACCGACAAAAGGCTGTGGC GATCGAGCGCTTGAGGGAATGCCAGCAGCAAGCGGCGGAGATTGAGGAAA AGTATCACATGGGGCCGCTTCAGTTCGCGGCACAGGTGGCCGGCGTTCCA CAGTCTGATCTACACAAGTGGGCTGGCGACGAGGCAGTCATCGTTGGAAA GGCAGCTGAGAAGGTGACCAGTGGCCTTCTGGGAAAGTCTGCCAAGAGGT CGTGGTTCCCCAAAGCCGAGCAAGCTCTATACGGCCTATACATGGCAAAG CGTCGGAAAGGCCTCAAGGTGTCGACACTCTGGCTTTGCACGATGATGGC GCAGGAGGTGAAGAAGCACTATCCGGACGATCCGCGGAGGCTGATGTTCA AGCCGTCGTGGCGCTGGGCGGGGAAGTGGGCAAACGAGCGCAGCATCGTT AAGCGGCGACGGAGCAACTCCAAGAACGAGAGCGTCGAGCAGCGCCTCCC CAAGATTGGACGGTTTCTCAAGAAACTGCGGGCTCTAATGCAGTGTCCGC CGCCGGGGCAGCGTGCACCTCCGGCGCCGGCACCAGCTGCTGCAGGGGGT AGCGGGGCATCTGCTGCTGGGGGAAGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1185:16866..18595-

>mRNA_P-littoralis_Contig1185.12.1 ID=mRNA_P-littoralis_Contig1185.12.1|Name=mRNA_P-littoralis_Contig1185.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1413bp|location=Sequence derived from alignment at P-littoralis_Contig1185:16866..18595- (Pylaiella littoralis U1_48)
ATGGACGCTGCGGCTGTGCTTGCGCTGAAATCGAAGCTAGCGTCGTTGAA
ACACAAAGGGGCTTTGACCACTGAGCAGTTCAGTCTTCTAAAGGCGAAAG
CGAAGGATGGGTTGGTAACTGAGCAAGTGTTGCAGAATCTCTCCAGTCTC
TGGAACCTGCGGTGTGATGGCTCCGTCGAAGAAGAAGAGTATGAGGAGGA
CCTGCAGATGATCTTCAAAGAGCTGGCACCCAGAGAGAGAGACTCGGGGG
CGGAAGAACCCACCGCTATCCAACGGGGCCGTCTCGCTCCTGCTGCAGTT
TCTCGTCGCCCGGCCTCGAAGTGGGAGAGGGAAAAAGCGTCACAGCTGTC
AAGATCCGCCGCTTCTGCACATCAGCACATCATTACCTCCTTCGTCAAAG
GATCCGGCGGGCCGATTGAGCGCACTCGGAACGATGGGTCTGTTGAGCTT
GTAGCGGGTGTTGTGGCCACCCCACTGCCCACCACTGGCGTACCGACTGT
CCAGTGCCCCTACTGCCCCAAGAAGTTCATGTGCACCCAGGCATCCGCGA
TCCACGTCGGAATGCGCCACCCTCAAGCCAAGAAGGACGAGGGGGAGCGG
CTTCTAAAGTTGCTGCTCGAACCGTCAGCATCTGTCACCAAGATGCCATG
GGAGGGAGTGGGTATGGGGCTGGTTTGGGTCGCTGATTTCAAGACGGGGC
GCGCGGAGTTCGGCATTCAGCAGAGAACCACACCTATCGACGATGGGTTC
GCCACTGACGACGAGGGCAAGGGAGAGGGACGCCGCGGTGCGCTGGTGCG
AAAACGGTACAGCTACCGACAAAAGGCTGTGGCGATCGAGCGCTTGAGGG
AATGCCAGCAGCAAGCGGCGGAGATTGAGGAAAAGTATCACATGGGGCCG
CTTCAGTTCGCGGCACAGGTGGCCGGCGTTCCACAGTCTGATCTACACAA
GTGGGCTGGCGACGAGGCAGTCATCGTTGGAAAGGCAGCTGAGAAGGTGA
CCAGTGGCCTTCTGGGAAAGTCTGCCAAGAGGTCGTGGTTCCCCAAAGCC
GAGCAAGCTCTATACGGCCTATACATGGCAAAGCGTCGGAAAGGCCTCAA
GGTGTCGACACTCTGGCTTTGCACGATGATGGCGCAGGAGGTGAAGAAGC
ACTATCCGGACGATCCGCGGAGGCTGATGTTCAAGCCGTCGTGGCGCTGG
GCGGGGAAGTGGGCAAACGAGCGCAGCATCGTTAAGCGGCGACGGAGCAA
CTCCAAGAACGAGAGCGTCGAGCAGCGCCTCCCCAAGATTGGACGGTTTC
TCAAGAAACTGCGGGCTCTAATGCAGTGTCCGCCGCCGGGGCAGCGTGCA
CCTCCGGCGCCGGCACCAGCTGCTGCAGGGGGTAGCGGGGCATCTGCTGC
TGGGGGAAGTGGG
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