mRNA_P-littoralis_Contig1185.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 175 bits (443), Expect = 6.670e-50 Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN++ N+LHLPS R+KQLRR A PP+TGVL +NI KYG LAA DADK DL G+LTWDLMHLNK GF+++PN GG
Sbjct: 404 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGF 516
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 176 bits (445), Expect = 8.660e-49 Identity = 76/113 (67.26%), Postives = 95/113 (84.07%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN++ N+LHLPS R+KQLRR A PP+TGVL +NI KYG LAA DADK DL G+LTWDLMHLNK+GF+++PN GG
Sbjct: 446 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGF 558
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.340e-47 Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN++ N+LHLPS R+KQLRR A PP+T VL +NI KYG LAA DADK DL G+LTWDLMHLNK+GF+++PN GG
Sbjct: 537 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGF 649
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.630e-47 Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN+++N+LHLPS R+KQLRR A PP+TGVL +NI K G LAA D DKADL G+L WDLMHLNK+GF+++PN GG
Sbjct: 304 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGF 416
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 161 bits (407), Expect = 3.770e-47 Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
DQ+RWN+ ++KGFRFHP TLRIAIYMHG+ G++ YN++ N +HLPS RV+QL+ QA PP+TGVL DNI+KYG LAA DADKADLTG+L+WDL HL+K+G +++P G +
Sbjct: 64 DQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRL 176
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI) HSP 1 Score: 124 bits (311), Expect = 2.290e-32 Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 79 YMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
YMHG+ G++ YN++ N +HLPS RV++L QA PP+TGVL DNI+KYG LAA DADKADLTG+L+WDL HL+K+GF+++P GG
Sbjct: 149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGF 235
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE) HSP 1 Score: 105 bits (261), Expect = 8.090e-26 Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 7 VRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQT-GVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
+ +N G++KG+RF P LR A+Y +G++ YN++ ++LHLPSI ++++RR A T GV ++ YG +AA + + DL GIL WDLMHLN +GF PN GGI
Sbjct: 2 MNYNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGI 113
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.850e-15 Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPS 144
DQVRWN+ G +GFR+HP TLRIA+Y+HGM GT+AYNLV +HLPS
Sbjct: 140 DQVRWNTKEGKERGFRYHPQTLRIALYLHGMAGTAAYNLVRQYVHLPS 187
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.650e-7 Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIK 216
D WN +G+ KG+R++P LR A+Y G+SAY ++ +LHLP V+++ + P G+ NIK
Sbjct: 258 DNYEWNRVNGSKKGWRYNPKVLRWALYAMHRCGSSAYEVLREVLHLPDPRHVRKIGMKTDPISAGIQHHNIK 329 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1185.4.1 >prot_P-littoralis_Contig1185.4.1 ID=prot_P-littoralis_Contig1185.4.1|Name=mRNA_P-littoralis_Contig1185.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIAback to top mRNA from alignment at P-littoralis_Contig1185:6761..7597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1185.4.1 ID=mRNA_P-littoralis_Contig1185.4.1|Name=mRNA_P-littoralis_Contig1185.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig1185:6761..7597- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1185:6761..7597- >mRNA_P-littoralis_Contig1185.4.1 ID=mRNA_P-littoralis_Contig1185.4.1|Name=mRNA_P-littoralis_Contig1185.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1185:6761..7597- (Pylaiella littoralis U1_48)back to top |