mRNA_P-littoralis_Contig1185.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1185.4.1
Unique NamemRNA_P-littoralis_Contig1185.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 6.670e-50
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN++ N+LHLPS  R+KQLRR A PP+TGVL +NI KYG LAA  DADK DL G+LTWDLMHLNK GF+++PN GG 
Sbjct:  404 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGF 516          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 8.660e-49
Identity = 76/113 (67.26%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN++ N+LHLPS  R+KQLRR A PP+TGVL +NI KYG LAA  DADK DL G+LTWDLMHLNK+GF+++PN GG 
Sbjct:  446 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGF 558          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.340e-47
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN++ N+LHLPS  R+KQLRR A PP+T VL +NI KYG LAA  DADK DL G+LTWDLMHLNK+GF+++PN GG 
Sbjct:  537 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGF 649          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.630e-47
Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            DQV+WN++HG AKGFRFHP T+R+AIY+ G+ GT+AYN+++N+LHLPS  R+KQLRR A PP+TGVL +NI K G LAA  D DKADL G+L WDLMHLNK+GF+++PN GG 
Sbjct:  304 DQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGF 416          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.770e-47
Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            DQ+RWN+   ++KGFRFHP TLRIAIYMHG+ G++ YN++ N +HLPS  RV+QL+ QA PP+TGVL DNI+KYG LAA  DADKADLTG+L+WDL HL+K+G +++P  G +
Sbjct:   64 DQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRL 176          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.290e-32
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   79 YMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            YMHG+ G++ YN++ N +HLPS  RV++L  QA PP+TGVL DNI+KYG LAA  DADKADLTG+L+WDL HL+K+GF+++P  GG 
Sbjct:  149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGF 235          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.090e-26
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    7 VRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQT-GVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLNKHGFNYSPNAGGI 339
            + +N   G++KG+RF P  LR A+Y    +G++ YN++ ++LHLPSI  ++++RR A    T GV    ++ YG +AA  +  + DL GIL WDLMHLN +GF   PN GGI
Sbjct:    2 MNYNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGI 113          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5KCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.850e-15
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPS 144
            DQVRWN+  G  +GFR+HP TLRIA+Y+HGM GT+AYNLV   +HLPS
Sbjct:  140 DQVRWNTKEGKERGFRYHPQTLRIALYLHGMAGTAAYNLVRQYVHLPS 187          
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-7
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIARVKQLRRQARPPQTGVLRDNIK 216
            D   WN  +G+ KG+R++P  LR A+Y     G+SAY ++  +LHLP    V+++  +  P   G+   NIK
Sbjct:  258 DNYEWNRVNGSKKGWRYNPKVLRWALYAMHRCGSSAYEVLREVLHLPDPRHVRKIGMKTDPISAGIQHHNIK 329          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G2I2_ECTSI6.670e-5067.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI2_ECTSI8.660e-4967.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE1.340e-4766.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE1.630e-4765.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R1_ECTSI3.770e-4761.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM8_ECTSI2.290e-3260.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQL9_9PHAE8.090e-2643.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN5_9PHAE4.850e-1566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE1.650e-736.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1185contigP-littoralis_Contig1185:6761..7597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size343
Hectar predicted targeting categoryother localisation
Exons2
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.6886759-CDS-P-littoralis_Contig1185:6762..68851680789497.6886759-CDS-P-littoralis_Contig1185:6762..6885Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 6763..6885 -
1680789497.7054682-CDS-P-littoralis_Contig1185:7381..75971680789497.7054682-CDS-P-littoralis_Contig1185:7381..7597Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 7382..7597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1185.4.1prot_P-littoralis_Contig1185.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1185 6763..7597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1185.4.1

>prot_P-littoralis_Contig1185.4.1 ID=prot_P-littoralis_Contig1185.4.1|Name=mRNA_P-littoralis_Contig1185.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
DQVRWNSTHGAAKGFRFHPTTLRIAIYMHGMIGTSAYNLVSNLLHLPSIA
RVKQLRRQARPPQTGVLRDNIKKYGNLAAHHDADKADLTGILTWDLMHLN
KHGFNYSPNAGGI
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mRNA from alignment at P-littoralis_Contig1185:6761..7597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1185.4.1 ID=mRNA_P-littoralis_Contig1185.4.1|Name=mRNA_P-littoralis_Contig1185.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig1185:6761..7597- (Pylaiella littoralis U1_48)
GACCAGGTGCGGTGGAACTCGACGCACGGAGCTGCGAAGGGGTTCAGGTT CCATCCGACTACCCTGAGGATCGCCATCTACATGCACGGGATGATTGGGA CGTCGGCGTACAACCTTGTGAGCAATTTGCTACACCTACCCTCCATCGCA CGCGTGAAGCAGCTTCGACGGCAGGCGAGGCCGCCACAAACGGGAGTGTT GCGGGATAACATCAAGGTACAAGTGTTGCAGCACAGCCAGAGTTGCAGCT TGTTGGATCGGGTTCCGCCCGTTCTGTTCTCGATATGCGACGGAGTGGTT TTCTCTGTTGCCAGATTTACGGATTACTTTCAGCGCTGCTGCGAACCATA TGGTGCCCTGTGGGCTCGTTGATGTCGACATGACATCCTGAAAAGTTTTT TTTACCCCTCTACACGCGAAGGGTTGTACAAAAGTATGAATCATACTATT GGGTCGACTTGCCGTGCAGGAGGTGTGGGCGCACAAAGCTGAAATCTTGT TTATCGAAAGTCAAGACATGCAGGTTCTCGTTTGGCAATCCGTTAGGCTA GATCGAGTATGTTTGCGCGCGCGTAGCTGGTACTTCACCCGCCACTTCGC AACGTTGATTCCCGCCGCTGGCTTGGCTTTGTTGGGGCGGTTCGTTTCTC ACACTCTTTCGACGTCCCGATCCCCCCGGCCCATTTCTGTTTTGCTGTCT ATCCCATTGTAGAAGTACGGGAACTTGGCCGCACACCACGACGCCGACAA GGCCGATTTGACCGGCATCCTGACCTGGGACTTGATGCACCTGAACAAGC ACGGCTTCAACTATTCCCCCAACGCCGGTGGCATTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1185:6761..7597-

>mRNA_P-littoralis_Contig1185.4.1 ID=mRNA_P-littoralis_Contig1185.4.1|Name=mRNA_P-littoralis_Contig1185.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1185:6761..7597- (Pylaiella littoralis U1_48)
GACCAGGTGCGGTGGAACTCGACGCACGGAGCTGCGAAGGGGTTCAGGTT
CCATCCGACTACCCTGAGGATCGCCATCTACATGCACGGGATGATTGGGA
CGTCGGCGTACAACCTTGTGAGCAATTTGCTACACCTACCCTCCATCGCA
CGCGTGAAGCAGCTTCGACGGCAGGCGAGGCCGCCACAAACGGGAGTGTT
GCGGGATAACATCAAGAAGTACGGGAACTTGGCCGCACACCACGACGCCG
ACAAGGCCGATTTGACCGGCATCCTGACCTGGGACTTGATGCACCTGAAC
AAGCACGGCTTCAACTATTCCCCCAACGCCGGTGGCATT
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