mRNA_P-littoralis_Contig731.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig731.14.1
Unique NamemRNA_P-littoralis_Contig731.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.520e-22
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   43 GMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQV 420
            G+ RNG I     +   LRWLAGGSI+E       +RS AY +   V++A+N C  L  +WP   E+  + A  FR +S   ++R+C+GA+D + ++M KP  +E   P+ +++GHKK  G+N QV
Sbjct:    2 GLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE-GEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.330e-22
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    4 LLRPRLYLASRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQ 417
            +LRP+L       G  RNG I     L   LR+LAGGS+ EV      ++S AYA+V  V+DAIN  R+L  +WP   ++    A  +R +S N +IRRC+GA+D + +++  P  + H  P  F+SGHKK  G+N Q
Sbjct:   87 ILRPKLQ-RDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPY-GDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6H5J5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.020e-21
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   43 GMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGF--REKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQ 417
            G   NG I    AL   LRWLAG  +         + S A+A +   LDAIND  RLR++WPR   E    A  F  R    + +++RC+GA++ + ++ KKP   EH  P RFFSGHK  VG+N Q
Sbjct:   24 GRGHNGTIAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKERELQAKAQRFAARRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFFSGHKMTVGMNYQ 150          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.840e-17
Identity = 49/138 (35.51%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    7 LRPRLYLASRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQV 420
            LRP L    ++ G+ RNG I     +   LRWLAGGSI+E       +RS AY +   V++A+N C  L  +WP   E+  +  +     +   ++R+C+GA+D + ++M KP  +E   P+ +++GHKK  G+N QV
Sbjct:   88 LRPALQQNEKT-GLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPE-GEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6A3QK27_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QK27_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.460e-16
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 LLRPRLYLASRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREH--VCPDRFFSGHKKCVGLNMQV 420
            LL P L+ +  +    + G I    AL   LR+ AGGS+H++RRV G S+++ Y ++  V+DAIN    LR+ +PR+   R   AA F+  S   +   C+G VD     ++ P   E   V P R++SGH +C G+N+Q 
Sbjct:   63 LLAPTLHRSPHA--WVQRGYISVDNALQLTLRYFAGGSMHDIRRVAGVSKASFYRILWLVVDAINAVSELRLVFPRSPTAREASAAAFKTLSAEGVFSGCVGCVDGWLCAIRAPRLAETGGVGPQRYYSGHYRCYGVNVQA 201          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6A3MSZ9_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MSZ9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.520e-16
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   91 CLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQV 420
            CLRWL+GGS H+VR + G S SA Y  +  V+DAI     L++++P + + + +VA  F + S + +++ C+GAVD     ++ P K+E      FF GH +  G+N+QV
Sbjct:   97 CLRWLSGGSYHDVREISGVSVSAFYTSIHEVVDAITAHAELQLQFPTSVQAQRRVAKAFEQLSNSHVMKGCVGAVDGWLCPIRVPQKKEVSRVRSFFCGHYQRYGVNVQV 206          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A225UUP6_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UUP6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-14
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   34 RSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQV 420
            RSRG+    P  P   L   L WLAGGS H +R ++G + +  Y +V  V+ AIND  +L  R+P T +E    AA FR  S + +I  C+G +D     ++ P K E      FFS H +  GLN+Q 
Sbjct:  102 RSRGIP---PPSPATMLQCALSWLAGGSYHHIRVIMGVNTATFYCIVYRVMFAINDSDKLAPRFPSTPQELSASAAAFRSCSNHGVIENCIGVIDGWFCPVRVPRKDECGRILSFFSRHYQKYGLNVQA 227          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: W2QNU6_PHYPN (DDE Tnp4 domain-containing protein n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QNU6_PHYPN)

HSP 1 Score: 76.3 bits (186), Expect = 1.780e-13
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   61 PIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQV 420
            PI P   L  CLRWL GGS H++R   G S SA YA +  V+DAI D   L++++P T   +   A  F   S + +++ C+ A+D     ++ P K E      FFSGH +  G+N+Q 
Sbjct:   87 PISPVNKLHMCLRWLGGGSYHDIRVTSGVSVSAFYASIHEVVDAIVDHPDLQLQFPSTIATQRYAAKHFENLSSSRVMKGCVVAIDGWLCPIRVPKKDEVSRVRSFFSGHYRRYGVNVQA 206          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6G0MZL1_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MZL1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.050e-13
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   91 CLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQV 420
            CLRWL+GGS H+VR + G S  A Y  +  V+ AI     L++++P T + +   A  F   S + +++ C+GAVD     ++ P K+E      FFSGH +  G+N+Q 
Sbjct:   97 CLRWLSGGSYHDVREISGVSVPAFYRSIHEVVGAIIAHPELQLQFPTTVQAQRHAAKAFERVSNSRVMKGCVGAVDGWLCPIRVPQKKEVSRVRSFFSGHYQRYGVNVQA 206          
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.280e-13
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    7 LRPRLYLASRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCSRSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRRCLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCV 402
            LRP L+  +   G+ R G I     +   LRWLAGGSI+E       +RS AY +   V++A+N C  L  +WP    +               ++R+C+GA+D + ++M KP  +E   P+ +++GH+K V
Sbjct:   88 LRPALH-KNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig731.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD49_9PHAE1.520e-2238.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M2_9PHAE6.330e-2240.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J5V5_9PHAE4.020e-2140.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA1_9PHAE7.840e-1735.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3QK27_9STRA1.460e-1636.17DDE Tnp4 domain-containing protein n=2 Tax=Phytoph... [more]
A0A6A3MSZ9_9STRA1.520e-1638.18DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A225UUP6_9STRA1.200e-1437.98DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
W2QNU6_PHYPN1.780e-1337.50DDE Tnp4 domain-containing protein n=5 Tax=Phytoph... [more]
A0A6G0MZL1_9STRA3.050e-1336.36DDE Tnp4 domain-containing protein n=1 Tax=Phytoph... [more]
A0A6H5JVS8_9PHAE4.280e-1332.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig731contigP-littoralis_Contig731:99515..99943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000023786
Model size429
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.4e-25
EggNOG OGs2F2X2@1|root,2T3VU@2759|Eukaryota,1MJPM@121069|Pythiales
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791518.2784696-CDS-P-littoralis_Contig731:99514..999431680791518.2784696-CDS-P-littoralis_Contig731:99514..99943Pylaiella littoralis U1_48CDSP-littoralis_Contig731 99515..99943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig731.14.1prot_P-littoralis_Contig731.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig731 99515..99943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig731.14.1

>prot_P-littoralis_Contig731.14.1 ID=prot_P-littoralis_Contig731.14.1|Name=mRNA_P-littoralis_Contig731.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
GLLRPRLYLASRSRGMTRNGPIHPGMALLGCLRWLAGGSIHEVRRVVGCS
RSAAYALVGAVLDAINDCRRLRVRWPRTAEERWKVAAGFREKSPNFIIRR
CLGAVDCVTIKMKKPGKREHVCPDRFFSGHKKCVGLNMQVRT*
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mRNA from alignment at P-littoralis_Contig731:99515..99943+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig731.14.1 ID=mRNA_P-littoralis_Contig731.14.1|Name=mRNA_P-littoralis_Contig731.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig731:99515..99943+ (Pylaiella littoralis U1_48)
GGTTTACTGCGCCCCCGGCTGTATCTGGCCAGTCGGAGTCGAGGCATGAC CCGTAACGGTCCAATCCACCCCGGCATGGCTCTTCTCGGATGCCTGCGGT GGCTCGCTGGCGGGAGCATTCATGAGGTGCGGAGAGTAGTTGGGTGCAGC AGGTCGGCAGCGTACGCTTTGGTGGGTGCTGTATTGGACGCTATCAACGA CTGCCGGAGGCTCCGGGTACGCTGGCCGCGCACGGCGGAAGAGAGGTGGA AGGTCGCGGCCGGTTTCAGAGAGAAGAGCCCCAATTTCATCATCAGGCGG TGCCTCGGGGCGGTGGACTGTGTCACGATCAAGATGAAGAAGCCTGGGAA GAGGGAACACGTGTGCCCTGACCGCTTTTTTTCGGGCCACAAGAAGTGTG TCGGGCTAAACATGCAGGTACGTACGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig731:99515..99943+

>mRNA_P-littoralis_Contig731.14.1 ID=mRNA_P-littoralis_Contig731.14.1|Name=mRNA_P-littoralis_Contig731.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig731:99515..99943+ (Pylaiella littoralis U1_48)
GGTTTACTGCGCCCCCGGCTGTATCTGGCCAGTCGGAGTCGAGGCATGAC
CCGTAACGGTCCAATCCACCCCGGCATGGCTCTTCTCGGATGCCTGCGGT
GGCTCGCTGGCGGGAGCATTCATGAGGTGCGGAGAGTAGTTGGGTGCAGC
AGGTCGGCAGCGTACGCTTTGGTGGGTGCTGTATTGGACGCTATCAACGA
CTGCCGGAGGCTCCGGGTACGCTGGCCGCGCACGGCGGAAGAGAGGTGGA
AGGTCGCGGCCGGTTTCAGAGAGAAGAGCCCCAATTTCATCATCAGGCGG
TGCCTCGGGGCGGTGGACTGTGTCACGATCAAGATGAAGAAGCCTGGGAA
GAGGGAACACGTGTGCCCTGACCGCTTTTTTTCGGGCCACAAGAAGTGTG
TCGGGCTAAACATGCAGGTACGTACGTAA
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