mRNA_P-littoralis_Contig728.27.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 190 bits (483), Expect = 3.260e-54 Identity = 119/306 (38.89%), Postives = 166/306 (54.25%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
+ N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + KLR +L A E +F L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ E PF+ + G + P KNS+++E P R +PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E + L A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 30 KINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 189 bits (480), Expect = 2.640e-53 Identity = 121/306 (39.54%), Postives = 166/306 (54.25%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
+FN+WY RF KR+ FSI+R+TSVGQK P+G EG AWA + KLR +L + A E +F L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ E PF T + G + P KNS+++E P R G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E F L A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 30 KFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 192 bits (488), Expect = 8.110e-52 Identity = 118/286 (41.26%), Postives = 155/286 (54.20%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 690
+F +WY RF KR++FSI+R+TSVGQK P+G EG AWA + KLR +L E A E +F L NMDQTP+Q EMP +TT+E TG K A I TGG+ E PFV T G A +P KNS+++E LP R+ G P GG+S GVQ+ SWCD + W+ + RP GS R QR +LVLDDF+CH+++ F L A T+V+ + GGL P+ QPLDR +NK+ KR +R YT+
Sbjct: 184 KFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.280e-50 Identity = 117/307 (38.11%), Postives = 165/307 (53.75%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE-------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
+FN+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + KL +L + A E +F + NMDQ P+Q EMP +TT++KTG K A I+TGG + PF+ T + G + +P KN +++E P R G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH +E F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 224 KFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 183 bits (465), Expect = 5.350e-50 Identity = 121/314 (38.54%), Postives = 166/314 (52.87%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
+FN+WY RF KR+ FSI+R+ SVGQK P+G+EG AWA + KLR +L + A E +F L NMDQTP+Q EMP +TT+E TG K A I+TGG+ E PF+ T + G + P KNS+++E P R G+PA G+S GVQ+ SW + + W+ + M RP + S QRP +LVLDDF+CH++E F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 184 KFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERG 496
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 177 bits (450), Expect = 4.330e-48 Identity = 118/312 (37.82%), Postives = 156/312 (50.00%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTG--------------------------GETVE------------------------PFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 690
+F +WY RF KR++FSI+R+TSVG + P+G EG AWA + KLR +L E A E +F L NMDQTP+Q EMP +TT+EKTG K A I TG G+ E PFV T G A +P KNS+++E LP R+ G P GG+S GVQ+ SWCD + W+ + RP GS R QR +LVLDDF+CH+++ F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R YT+
Sbjct: 117 KFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE) HSP 1 Score: 170 bits (431), Expect = 8.750e-46 Identity = 107/275 (38.91%), Postives = 145/275 (52.73%), Query Frame = 1
Query: 49 SIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE--------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIR 699
SI+R+TSVGQK P+G+EG AWA + KLR +L + A E +F L NMDQTP+Q EMP +TT+EKTG K A I+TGG E PF+ T + G + P KNS+++E P R G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E F L A T+V+ GGLTP+ QPLDR +NK+ KR +R S +R
Sbjct: 108 SIRRRTSVGQKLPQGYEGMAWATVMKLREALVKRAGEIYARRHPPVPDKSPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGGQREGTLHARSGCHGGRQKNVSPRIIFQGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFTPGGLTPLLQPLDRTLNKQMKRLLRGNVGSSLR 382
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 173 bits (439), Expect = 2.900e-45 Identity = 111/284 (39.08%), Postives = 146/284 (51.41%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET----------------------------VEPFVGGTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 675
+F WY F +RH FSI+R+TSVGQK P G+EG A+A + KLR++L E A E +F L NMDQTP+Q EMP +TT+EK G K A I+TGG+ + P G K+ +K ++ E L RT FGYP G+ VQ+ SWCD + W+++ + RP GS + QR S+LVLDDFRCHR E F K L T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct: 99 KFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRK---GYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 162 bits (409), Expect = 5.230e-45 Identity = 98/252 (38.89%), Postives = 132/252 (52.38%), Query Frame = 1
Query: 106 AWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVEPF-----VGGTNKS--------------------GSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 693
AWA + KLR +L E A E +F L NMDQTP+Q EMP +T++EKTG K A I TGG+ E F V G K G A +P KNS+++E LP+ R+ GYP GG+S GVQ+ SWCD + W+ + RP + S QRP +LVLDDF+CH+++ F +L A T+V+ + GGLTP+ QPLDR +NK KR +R YT++
Sbjct: 2 AWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE) HSP 1 Score: 169 bits (428), Expect = 8.530e-45 Identity = 112/288 (38.89%), Postives = 152/288 (52.78%), Query Frame = 1
Query: 4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVEPFV--------GG-----------------TNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 696
+F WY RF +RH SI+R+TSVGQK P G+EG A+A + KLR++L E A E +F L NMDQTP+Q EMP +TT+EK G K A I+TGG+ E F GG T + G +P K S++ E LP +T+FGYP G+S GVQ+ SW D + W+++ + RP GS + QR S+LVLDDFR + T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct: 203 KFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig728.27.3 >prot_P-littoralis_Contig728.27.3 ID=prot_P-littoralis_Contig728.27.3|Name=mRNA_P-littoralis_Contig728.27.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp MDQTPIQAEMPPDTTVEKTGTKSACITTGGETVEPFVGGTNKSGSAKKPGback to top mRNA from alignment at P-littoralis_Contig728:132091..133482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig728.27.3 ID=mRNA_P-littoralis_Contig728.27.3|Name=mRNA_P-littoralis_Contig728.27.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1392bp|location=Sequence derived from alignment at P-littoralis_Contig728:132091..133482+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig728:132091..133482+ >mRNA_P-littoralis_Contig728.27.3 ID=mRNA_P-littoralis_Contig728.27.3|Name=mRNA_P-littoralis_Contig728.27.3|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig728:132091..133482+ (Pylaiella littoralis U1_48)back to top |