mRNA_P-littoralis_Contig728.27.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig728.27.3
Unique NamemRNA_P-littoralis_Contig728.27.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.260e-54
Identity = 119/306 (38.89%), Postives = 166/306 (54.25%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
            + N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG+  E                        PF+    +  G +  P KNS+++E  P  R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:   30 KINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.640e-53
Identity = 121/306 (39.54%), Postives = 166/306 (54.25%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
            +FN+WY RF KR+ FSI+R+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG K A I+TGG+  E                        PF   T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:   30 KFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 8.110e-52
Identity = 118/286 (41.26%), Postives = 155/286 (54.20%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 690
            +F +WY RF KR++FSI+R+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I TGG+  E                        PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  184 KFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.280e-50
Identity = 117/307 (38.11%), Postives = 165/307 (53.75%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE-------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
            +FN+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG   +                         PF+  T +  G + +P KN +++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  224 KFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 5.350e-50
Identity = 121/314 (38.54%), Postives = 166/314 (52.87%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 747
            +FN+WY RF KR+ FSI+R+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+  E                        PF+  T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  184 KFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERG 496          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.330e-48
Identity = 118/312 (37.82%), Postives = 156/312 (50.00%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTG--------------------------GETVE------------------------PFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 690
            +F +WY RF KR++FSI+R+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I TG                          G+  E                        PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  117 KFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 8.750e-46
Identity = 107/275 (38.91%), Postives = 145/275 (52.73%), Query Frame = 1
Query:   49 SIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVE--------------------------PFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIR 699
            SI+R+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG   E                          PF+  T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+   GGLTP+ QPLDR +NK+ KR +R    S +R
Sbjct:  108 SIRRRTSVGQKLPQGYEGMAWATVMKLREALVKRAGEIYARRHPPVPDKSPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGGQREGTLHARSGCHGGRQKNVSPRIIFQGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFTPGGLTPLLQPLDRTLNKQMKRLLRGNVGSSLR 382          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.900e-45
Identity = 111/284 (39.08%), Postives = 146/284 (51.41%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET----------------------------VEPFVGGTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 675
            +F  WY  F +RH FSI+R+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+                             + P   G  K+   +K     ++ E L   RT FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct:   99 KFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRK---GYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.230e-45
Identity = 98/252 (38.89%), Postives = 132/252 (52.38%), Query Frame = 1
Query:  106 AWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVEPF-----VGGTNKS--------------------GSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 693
            AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +T++EKTG K A I TGG+  E F     V G  K                     G A +P KNS+++E LP+ R+  GYP GG+S GVQ+ SWCD  +   W+   +  RP + S   QRP +LVLDDF+CH+++ F  +L   A T+V+ + GGLTP+ QPLDR +NK  KR +R  YT++
Sbjct:    2 AWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 8.530e-45
Identity = 112/288 (38.89%), Postives = 152/288 (52.78%), Query Frame = 1
Query:    4 RFNAWYCRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVEPFV--------GG-----------------TNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 696
            +F  WY RF +RH  SI+R+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+  E F         GG                 T + G   +P K S++ E LP  +T+FGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct:  203 KFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig728.27.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE3.260e-5438.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.640e-5339.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE8.110e-5241.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT8_9PHAE1.280e-5038.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE5.350e-5038.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE4.330e-4837.82DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKC9_9PHAE8.750e-4638.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE2.900e-4539.08Integrase catalytic domain-containing protein n=1 ... [more]
D7FXD3_ECTSI5.230e-4538.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE8.530e-4538.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig728contigP-littoralis_Contig728:132091..133482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size857
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.5e-43
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size582
COG categoryCH
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.2307305-UTR-P-littoralis_Contig728:132090..1322521680791510.2307305-UTR-P-littoralis_Contig728:132090..132252Pylaiella littoralis U1_48UTRP-littoralis_Contig728 132091..132252 +
1680791510.2511017-UTR-P-littoralis_Contig728:132357..1323781680791510.2511017-UTR-P-littoralis_Contig728:132357..132378Pylaiella littoralis U1_48UTRP-littoralis_Contig728 132358..132378 +
1680791510.2849512-UTR-P-littoralis_Contig728:133390..1334821680791510.2849512-UTR-P-littoralis_Contig728:133390..133482Pylaiella littoralis U1_48UTRP-littoralis_Contig728 133391..133482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.263982-CDS-P-littoralis_Contig728:132378..1324761680791510.263982-CDS-P-littoralis_Contig728:132378..132476Pylaiella littoralis U1_48CDSP-littoralis_Contig728 132379..132476 +
1680791510.274265-CDS-P-littoralis_Contig728:132906..1333901680791510.274265-CDS-P-littoralis_Contig728:132906..133390Pylaiella littoralis U1_48CDSP-littoralis_Contig728 132907..133390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig728.27.3prot_P-littoralis_Contig728.27.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig728 132379..133390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig728.27.3

>prot_P-littoralis_Contig728.27.3 ID=prot_P-littoralis_Contig728.27.3|Name=mRNA_P-littoralis_Contig728.27.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
MDQTPIQAEMPPDTTVEKTGTKSACITTGGETVEPFVGGTNKSGSAKKPG
KNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP
GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQP
LDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAPSRGWSRRG*
back to top

mRNA from alignment at P-littoralis_Contig728:132091..133482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig728.27.3 ID=mRNA_P-littoralis_Contig728.27.3|Name=mRNA_P-littoralis_Contig728.27.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1392bp|location=Sequence derived from alignment at P-littoralis_Contig728:132091..133482+ (Pylaiella littoralis U1_48)
AAGCGTTTCAACGCCTGGTACTGCAGGTTCCTCAAGAGGCACCGGTTCTC GATCCAACGCAAGACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGG GCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCAC GCGCAGGAAGCCGTTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGG AGGGACCGTTGAGATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTC TGGCTGTTCAGGGCAAGATCTTCGCCCTTCTGTACAACATGGACCAGACC CCGATCCAGGCTGAGATGCCGCCGGACACCACGGTGGAGAAGACTGGTAC GAAGAGCGCTTGCATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATT TCGATTGTTGAAATTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGA TGGAACAAGCGGGGAATTACAAATTTGCCGACGGCGGAAAAACGGGGAAT TATAATATTTTGCATTGCTTCTGCCGTCACGTGCACGCTTTCGTTCTTCT ATTGCCTGCAAGTACGGTACGTACTGCTGTATCGCCTGTCCCTTCGAACT ACCGGTACACAGCGATGAAATTATTCATATGGTATTCCGCTGAAGTATTT TTTTTAATATACATATGTTTTGGGGGCAATATATATTTTACCGTATACAC CGGAGTTTGTTTTTATTTTACTTTTTATGTTGTGGTAGGCATTACACCCC AGGAGTTAAAGGTGTGCGTTTGTTTTTTATTATTATTTATTTTTTGTTTG TTGTGGCAGGCAATAGGGAACCCTTTGTCGGGGGTACCAACAAGTCAGGC TCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCGTACGAGCACCTCCCAGA CAAGCGGACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGTGC AGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAACCCAG GACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAGCGT TCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGA AGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTG ACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGCG AGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGCGCT CGGGGCAGAAGGTGACCGCGCCGAGCAGGGGCTGGTCGCGACGTGGGTAA AGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTTCAAG GTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGACCAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig728:132091..133482+

>mRNA_P-littoralis_Contig728.27.3 ID=mRNA_P-littoralis_Contig728.27.3|Name=mRNA_P-littoralis_Contig728.27.3|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig728:132091..133482+ (Pylaiella littoralis U1_48)
ATGGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGTGGA
GAAGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGGTGG
AACCCTTTGTCGGGGGTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGC
AAGAACAGCCTGTCGTACGAGCACCTCCCAGACAAGCGGACGAGCTTCGG
CTACCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCG
ACGGCACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCA
GGGTCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTT
CAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCA
AGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCG
CTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTA
CACCAGCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGGTGACCG
CGCCGAGCAGGGGCTGGTCGCGACGTGGGTAA
back to top