mRNA_P-littoralis_Contig725.12.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.360e-35 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 1 DVTTDTFYNIFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVWN 285
D T++ F +FS E +RPDWIV SPPY AF+ L +AL + RVGVAFKLRL FL+PTKTRG+WL DN P VVVL RATY GR STEAWF+W+
Sbjct: 66 DATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.610e-17 Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 10 TDTFYNIFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVW 282
TD F + +H ++PDWIV SPPYK A AF+K AL + + GVA KL L FL+P R WL N P + ++++RA Y+ E W VW
Sbjct: 135 TDDF--LAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVW 223
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.470e-17 Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 127 VGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVW 282
+GVAFKLRL FL P K+RG+WL DN P +V+L RATYR RR STE WFVW
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVW 52
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 9.720e-17 Identity = 46/72 (63.89%), Postives = 48/72 (66.67%), Query Frame = -2
Query: 6 TTTI*GELSASHCPLVFVGCRKSSLSLNATPTRPIRSACFKKANAVLYGGLFTIQSGRRVSWLKML*NVSVV 221
TT + SHCPLV VG RK SLSLNATPTRPI A FK A A LYGGL T SGRR S K+ NVSVV
Sbjct: 162 TTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVV 233
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 2.920e-15 Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 28 IFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYR 243
+ +H ++PDW+V SPPY+ A AF+K AL + + GVA KL L FL+P R WL N P + ++++RA Y+
Sbjct: 29 LAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQ 100
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 73.6 bits (179), Expect = 3.090e-14 Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 1 DVTTDTFYNIFSHETRRP-DWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRG--RRSCSTEAWFVWNK 288
D TT ++ + ++P DW+V +PP+ +A L +A VGVAF LRL +L+P K RGQWLA++ P ++V L R ++ G + T AW +W K
Sbjct: 72 DATTHQYW-----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTCAWMIWKK 164
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 9.980e-8 Identity = 33/92 (35.87%), Postives = 47/92 (51.09%), Query Frame = 1
Query: 55 DWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWL---ADNSPHMVVVLARATYR--------GRRSCS---TEAWFVWNK 288
DW+V +PP+ A L A+ RVGVAF LRL +++P TR WL AD + + R +R G++ + T AWFVW +
Sbjct: 84 DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVWRR 175
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B) HSP 1 Score: 51.2 bits (121), Expect = 1.930e-5 Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 1
Query: 55 DWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARAT------YRGRRSCSTE-AWFVW 282
DW++ +PP+ A+ FL+QA+RI R GVAF +RL +L+ P +V V + + S +T AW+VW
Sbjct: 102 DWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVFTERLPMCLGGWDPKLSTATAYAWYVW 184
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: UPI001917D731 (hypothetical protein n=1 Tax=Brevundimonas aurantiaca TaxID=74316 RepID=UPI001917D731) HSP 1 Score: 50.1 bits (118), Expect = 4.660e-5 Identity = 32/87 (36.78%), Postives = 43/87 (49.43%), Query Frame = 1
Query: 49 RPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARAT--YRGR-----RSCSTEAWFVWNK 288
RPDWI+ +PP+ AF++QA R R GVA LRL FL+ R + + H A +GR S + AWF+W K
Sbjct: 102 RPDWIITNPPFVKGEAFVRQAWRRARRGVAMLLRLQFLEGA-ARYRLFHELPLHACAPFAERVPMVKGRWDPTASSATAYAWFIWLK 187 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig725.12.1 >prot_P-littoralis_Contig725.12.1 ID=prot_P-littoralis_Contig725.12.1|Name=mRNA_P-littoralis_Contig725.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp DVTTDTFYNIFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRback to top mRNA from alignment at P-littoralis_Contig725:60769..61056+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig725.12.1 ID=mRNA_P-littoralis_Contig725.12.1|Name=mRNA_P-littoralis_Contig725.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig725:60769..61056+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig725:60769..61056+ >mRNA_P-littoralis_Contig725.12.1 ID=mRNA_P-littoralis_Contig725.12.1|Name=mRNA_P-littoralis_Contig725.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig725:60769..61056+ (Pylaiella littoralis U1_48)back to top |