mRNA_P-littoralis_Contig725.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig725.12.1
Unique NamemRNA_P-littoralis_Contig725.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.360e-35
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 DVTTDTFYNIFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVWN 285
            D T++ F  +FS E +RPDWIV SPPY  AF+ L +AL + RVGVAFKLRL FL+PTKTRG+WL DN P  VVVL RATY GR   STEAWF+W+
Sbjct:   66 DATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.610e-17
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 TDTFYNIFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVW 282
            TD F  + +H  ++PDWIV SPPYK A AF+K AL + + GVA KL L FL+P   R  WL  N P + ++++RA Y+       E W VW
Sbjct:  135 TDDF--LAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVW 223          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.470e-17
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  127 VGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVW 282
            +GVAFKLRL FL P K+RG+WL DN P  +V+L RATYR RR  STE WFVW
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVW 52          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 9.720e-17
Identity = 46/72 (63.89%), Postives = 48/72 (66.67%), Query Frame = -2
Query:    6 TTTI*GELSASHCPLVFVGCRKSSLSLNATPTRPIRSACFKKANAVLYGGLFTIQSGRRVSWLKML*NVSVV 221
            TT +      SHCPLV VG RK SLSLNATPTRPI  A FK A A LYGGL T  SGRR S  K+  NVSVV
Sbjct:  162 TTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVV 233          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.920e-15
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   28 IFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYR 243
            + +H  ++PDW+V SPPY+ A AF+K AL + + GVA KL L FL+P   R  WL  N P + ++++RA Y+
Sbjct:   29 LAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQ 100          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 73.6 bits (179), Expect = 3.090e-14
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 DVTTDTFYNIFSHETRRP-DWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARATYRG--RRSCSTEAWFVWNK 288
            D TT  ++     + ++P DW+V +PP+ +A   L +A     VGVAF LRL +L+P K RGQWLA++ P ++V L R ++ G  +    T AW +W K
Sbjct:   72 DATTHQYW-----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTCAWMIWKK 164          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 9.980e-8
Identity = 33/92 (35.87%), Postives = 47/92 (51.09%), Query Frame = 1
Query:   55 DWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWL---ADNSPHMVVVLARATYR--------GRRSCS---TEAWFVWNK 288
            DW+V +PP+  A   L  A+   RVGVAF LRL +++P  TR  WL   AD   +   +  R  +R        G++  +   T AWFVW +
Sbjct:   84 DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVWRR 175          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B)

HSP 1 Score: 51.2 bits (121), Expect = 1.930e-5
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 1
Query:   55 DWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARAT------YRGRRSCSTE-AWFVW 282
            DW++ +PP+  A+ FL+QA+RI R GVAF +RL +L+             P +V V           +  + S +T  AW+VW
Sbjct:  102 DWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVFTERLPMCLGGWDPKLSTATAYAWYVW 184          
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Match: UPI001917D731 (hypothetical protein n=1 Tax=Brevundimonas aurantiaca TaxID=74316 RepID=UPI001917D731)

HSP 1 Score: 50.1 bits (118), Expect = 4.660e-5
Identity = 32/87 (36.78%), Postives = 43/87 (49.43%), Query Frame = 1
Query:   49 RPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLRLDFLQPTKTRGQWLADNSPHMVVVLARAT--YRGR-----RSCSTEAWFVWNK 288
            RPDWI+ +PP+    AF++QA R  R GVA  LRL FL+    R +   +   H     A      +GR      S +  AWF+W K
Sbjct:  102 RPDWIITNPPFVKGEAFVRQAWRRARRGVAMLLRLQFLEGA-ARYRLFHELPLHACAPFAERVPMVKGRWDPTASSATAYAWFIWLK 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.360e-3564.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE1.610e-1745.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE2.470e-1767.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE9.720e-1763.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE2.920e-1544.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO3.090e-1439.39Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
A0A1V5ZCZ4_9BACT9.980e-835.87Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
UPI000E0E050B1.930e-533.73SAM-dependent DNA methyltransferase n=2 Tax=Microv... [more]
UPI001917D7314.660e-536.78hypothetical protein n=1 Tax=Brevundimonas auranti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig725contigP-littoralis_Contig725:60769..61056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size288
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons1
Evalue2.88e-12
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size288
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.4901636-CDS-P-littoralis_Contig725:60768..610561680791506.4901636-CDS-P-littoralis_Contig725:60768..61056Pylaiella littoralis U1_48CDSP-littoralis_Contig725 60769..61056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig725.12.1prot_P-littoralis_Contig725.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig725 60769..61056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig725.12.1

>prot_P-littoralis_Contig725.12.1 ID=prot_P-littoralis_Contig725.12.1|Name=mRNA_P-littoralis_Contig725.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
DVTTDTFYNIFSHETRRPDWIVKSPPYKTAFAFLKQALRIGRVGVAFKLR
LDFLQPTKTRGQWLADNSPHMVVVLARATYRGRRSCSTEAWFVWNK
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mRNA from alignment at P-littoralis_Contig725:60769..61056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig725.12.1 ID=mRNA_P-littoralis_Contig725.12.1|Name=mRNA_P-littoralis_Contig725.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig725:60769..61056+ (Pylaiella littoralis U1_48)
GACGTGACGACGGACACGTTTTACAACATCTTCAGCCACGAGACGCGCCG CCCGGACTGGATCGTGAAGAGCCCGCCGTACAAGACCGCGTTTGCTTTTT TGAAGCAGGCGCTACGGATCGGGCGCGTTGGGGTGGCGTTCAAGCTCAGG CTCGATTTCCTGCAGCCCACAAAAACTAGGGGGCAGTGGCTCGCCGATAA CTCTCCTCATATGGTGGTAGTGCTAGCGCGCGCTACATATCGTGGTAGAC GCTCTTGCTCGACGGAGGCTTGGTTCGTATGGAACAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig725:60769..61056+

>mRNA_P-littoralis_Contig725.12.1 ID=mRNA_P-littoralis_Contig725.12.1|Name=mRNA_P-littoralis_Contig725.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig725:60769..61056+ (Pylaiella littoralis U1_48)
GACGTGACGACGGACACGTTTTACAACATCTTCAGCCACGAGACGCGCCG
CCCGGACTGGATCGTGAAGAGCCCGCCGTACAAGACCGCGTTTGCTTTTT
TGAAGCAGGCGCTACGGATCGGGCGCGTTGGGGTGGCGTTCAAGCTCAGG
CTCGATTTCCTGCAGCCCACAAAAACTAGGGGGCAGTGGCTCGCCGATAA
CTCTCCTCATATGGTGGTAGTGCTAGCGCGCGCTACATATCGTGGTAGAC
GCTCTTGCTCGACGGAGGCTTGGTTCGTATGGAACAAG
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