mRNA_P-littoralis_Contig722.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig722.3.1
Unique NamemRNA_P-littoralis_Contig722.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 9.150e-21
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEV 294
            E   R+AL   IGG +EV TPSG ID  + + V+EV     WK+G+GQV+AY SHYP   +RLHLF  I GD    KY E+A+SVC  + +  TF++V
Sbjct:   48 ESSAREALASLIGGEREVETPSGFIDKPS-DAVIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHI-GDKDTDKYFEMAKSVCYAHAVKVTFEKV 143          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: K7X2U1_9NOST (Uncharacterized protein n=1 Tax=Anabaena sp. 90 TaxID=46234 RepID=K7X2U1_9NOST)

HSP 1 Score: 90.1 bits (222), Expect = 1.910e-20
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEVMS 300
            E +VRD LK ++GG+ EV TP+G IDLLT  E++EV   ++WK G+GQV+ Y   YP   KRLHLFG  E + + +   ++A S C  + +  +FD+V S
Sbjct:   91 EFIVRDNLKSQLGGLTEVTTPAGRIDLLTDTEIIEVKRVKDWKAGLGQVLVYSGFYPEHQKRLHLFGSAEYEKQIA---DIAAS-CLVFDVLVSFDQVTS 186          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.430e-19
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESV 255
            E +VRDAL   +GG  EV TPSG ID+L+  EV+EV  +R WK+G+GQV+AY SHYP   +RLHLF    GD    KY ELA+++
Sbjct:  284 ECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHT-GDRDTDKYCELAKAI 367          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: A0A1Y0RHW2_9CYAN (Uncharacterized protein n=1 Tax=Nostocales cyanobacterium HT-58-2 TaxID=1940762 RepID=A0A1Y0RHW2_9CYAN)

HSP 1 Score: 87.8 bits (216), Expect = 1.920e-19
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEV 294
            E  V D L  ++GG++EV TP G IDLLT  E++EV N ++WK  IGQV+AY   +P   KRLHLFG      +       A ++C+  GI  TF+EV
Sbjct:  109 EDTVCDRLHSQLGGLREVETPVGRIDLLTDTEIIEVKNIKDWKAAIGQVLAYSGFFPEHRKRLHLFGK-----KGEMVTSTAVTICAELGITVTFEEV 201          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: A0A1Z4J7N4_9CYAN (Uncharacterized protein n=1 Tax=Scytonema sp. HK-05 TaxID=1137095 RepID=A0A1Z4J7N4_9CYAN)

HSP 1 Score: 85.9 bits (211), Expect = 8.620e-19
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEVMSD 303
            E+ VRD LK  +GG  EV+T SG IDLL+  E++E+  F NWKE +GQ+  Y + +P+  KR+HLFG       A K +   E+ C  + +  T  EV +D
Sbjct:   96 EQQVRDNLKAILGGQSEVMTSSGRIDLLSDREIIEIKQFNNWKEALGQIFTYSAFFPTYNKRIHLFG----SATALKKLPDIEAACLPFEVLVTGQEVEND 192          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: UPI0006982661 (MarR family transcriptional regulator n=1 Tax=Aliterella atlantica TaxID=1827278 RepID=UPI0006982661)

HSP 1 Score: 84.3 bits (207), Expect = 3.560e-18
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEVM 297
            E+ VRD L  ++GG+ EV TP+G IDLLT +E+ EV   ++WK  +GQ++ Y S YP   KRLHLFG      R  + +   E+   ++GI  T +EV+
Sbjct:  100 EKAVRDRLHAQLGGLVEVATPAGRIDLLTNSEITEVKAIKDWKAALGQILVYSSFYPQHQKRLHLFGT----ARELEALVNIEAAIISFGIRVTGEEVV 194          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: UPI001D2F14B2 (hypothetical protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D2F14B2)

HSP 1 Score: 83.2 bits (204), Expect = 4.130e-18
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDE 291
            E   RD L   + G  EV  PSG ID+LT N+++EV + + W   +GQVI YG HYP+  KR+HLFG +E +   S  + L +  C    I ATF+E
Sbjct:   63 ESYYRDKLAKSLNGQTEVRVPSGRIDILTSNQIIEVKHIKKWNAALGQVITYGYHYPNHQKRIHLFG-VENN---SSKILLIQKQCQEQNIIATFEE 155          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: A0A2P8QK91_9CYAN (Uncharacterized protein n=2 Tax=Chroococcidiopsidales TaxID=1890505 RepID=A0A2P8QK91_9CYAN)

HSP 1 Score: 83.6 bits (205), Expect = 7.070e-18
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 RMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEV 294
            R +RD L  ++GG+ EV+TP+G IDLLT  +++E+ + ++WK  +GQ +AY   YP   KR+HLFG      R S      E+ C  +G+  T +EV
Sbjct:   99 RKIRDRLHAQLGGLVEVVTPAGRIDLLTDTQIIEIKSIQDWKAALGQTLAYSGFYPEHQKRIHLFGSAFELKRLSDI----EAACLCFGVKVTGEEV 191          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: K9VSH3_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VSH3_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 9.580e-18
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFD 288
            E+   + L++ IGG  EVLTP+GSIDLLT ++++EV + +NWK  IGQV+ Y ++YPS  KR+HLFG     T    +++  +  C    I  T++
Sbjct:  155 EKWYVNQLQVEIGGETEVLTPAGSIDLLTTSQLIEVKHIKNWKTAIGQVLVYSAYYPSHEKRIHLFG-----TCHESFLDTVKQHCQRQNIVLTWE 245          
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.760e-17
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 ERMVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAYGSHYPSRTKRLHLF 198
            E +VRDAL   +GG  EV TPSG ID+L+  EV+EV  +RNWKEG+GQV+ Y SHYP  ++RLHLF
Sbjct:  718 ECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLF 783          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig722.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LFH9_ECTSI9.150e-2148.98FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
K7X2U1_9NOST1.910e-2045.00Uncharacterized protein n=1 Tax=Anabaena sp. 90 Ta... [more]
A0A6H5JJP2_9PHAE1.430e-1954.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y0RHW2_9CYAN1.920e-1944.90Uncharacterized protein n=1 Tax=Nostocales cyanoba... [more]
A0A1Z4J7N4_9CYAN8.620e-1941.58Uncharacterized protein n=1 Tax=Scytonema sp. HK-0... [more]
UPI00069826613.560e-1842.42MarR family transcriptional regulator n=1 Tax=Alit... [more]
UPI001D2F14B24.130e-1843.30hypothetical protein n=1 Tax=Waterburya agarophyto... [more]
A0A2P8QK91_9CYAN7.070e-1840.21Uncharacterized protein n=2 Tax=Chroococcidiopsida... [more]
K9VSH3_9CYAN9.580e-1841.67Uncharacterized protein n=2 Tax=Oscillatoriales Ta... [more]
A0A6H5L5N7_9PHAE2.760e-1760.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig722contigP-littoralis_Contig722:14984..15286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog221288.JH992899_gene5
Model size303
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-19
EggNOG OGs29WTT@1|root,30IF6@2|Bacteria,1G9IK@1117|Cyanobacteria,1JM7S@1189|Stigonemataceae
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.4357853-UTR-P-littoralis_Contig722:14983..149891680791503.4357853-UTR-P-littoralis_Contig722:14983..14989Pylaiella littoralis U1_48UTRP-littoralis_Contig722 14984..14989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.4480543-CDS-P-littoralis_Contig722:14989..152861680791503.4480543-CDS-P-littoralis_Contig722:14989..15286Pylaiella littoralis U1_48CDSP-littoralis_Contig722 14990..15286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig722.3.1prot_P-littoralis_Contig722.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig722 14990..15286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig722.3.1

>prot_P-littoralis_Contig722.3.1 ID=prot_P-littoralis_Contig722.3.1|Name=mRNA_P-littoralis_Contig722.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MVRDALKIRIGGMQEVLTPSGSIDLLTINEVVEVMNFRNWKEGIGQVIAY
GSHYPSRTKRLHLFGPIEGDTRASKYVELAESVCSTYGIHATFDEVMSD
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mRNA from alignment at P-littoralis_Contig722:14984..15286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig722.3.1 ID=mRNA_P-littoralis_Contig722.3.1|Name=mRNA_P-littoralis_Contig722.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig722:14984..15286+ (Pylaiella littoralis U1_48)
GAGCGTATGGTCAGGGACGCCCTTAAAATTCGCATCGGGGGAATGCAAGA AGTGCTCACGCCGTCGGGCTCGATTGATTTGCTTACGATAAACGAGGTGG TCGAGGTGATGAATTTCAGGAACTGGAAAGAGGGAATCGGCCAGGTTATT GCCTACGGTTCGCACTACCCTTCTCGGACAAAACGACTCCACCTTTTCGG ACCAATAGAGGGAGACACAAGAGCATCGAAATATGTTGAATTGGCCGAGT CGGTGTGCTCCACGTACGGGATTCACGCCACATTTGATGAGGTGATGAGT GAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig722:14984..15286+

>mRNA_P-littoralis_Contig722.3.1 ID=mRNA_P-littoralis_Contig722.3.1|Name=mRNA_P-littoralis_Contig722.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig722:14984..15286+ (Pylaiella littoralis U1_48)
ATGGTCAGGGACGCCCTTAAAATTCGCATCGGGGGAATGCAAGAAGTGCT
CACGCCGTCGGGCTCGATTGATTTGCTTACGATAAACGAGGTGGTCGAGG
TGATGAATTTCAGGAACTGGAAAGAGGGAATCGGCCAGGTTATTGCCTAC
GGTTCGCACTACCCTTCTCGGACAAAACGACTCCACCTTTTCGGACCAAT
AGAGGGAGACACAAGAGCATCGAAATATGTTGAATTGGCCGAGTCGGTGT
GCTCCACGTACGGGATTCACGCCACATTTGATGAGGTGATGAGTGAC
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