mRNA_P-littoralis_Contig721.16.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 175 bits (444), Expect = 5.260e-53 Identity = 87/147 (59.18%), Postives = 108/147 (73.47%), Query Frame = 1
Query: 16 QVTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCSTEAWFVWN 456
+V +LL +V++ G VLD CGSA DA VL + V++ND NP L AD+H+D T++ F +FS E +RPDWIVT PPY AF+IL +AL + RVGVAFKLRL FL+P KTRG+WL DN P VVVLPRATY GR STEAWF+W+
Sbjct: 14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 95.9 bits (237), Expect = 8.310e-22 Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 1 FSTSWQVTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADS-HVDVTTDTFYNIFSHETRRP-DWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGR---HSCSTEAWFVWNK 459
F+ + V +LL H+++ G +L+ C + A S L E G+ V + D IAD+ D TT ++ + ++P DW+VT PP+ +A IL +A VGVAF LRL +L+P K RGQWLA++ P ++V LPR ++ G SC T AW +W K
Sbjct: 20 FTPTSAVDTLLNHIDITGTLLEPCNGS-GAISNRLKEDGLSVITTD-----IADNPQDDATTHQYW-----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSC-TCAWMIWKK 164
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.730e-17 Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 70 CGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIF--SHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCST-EAWFVW 453
CG DA + L + +ND++ AD++++ + + F F ++ +RP+W+VT PPY A +K A+ + GVAFK+ + FL+P RG WL N P + V L RA Y ++ T E W VW
Sbjct: 2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 3.390e-17 Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 298 VGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCSTEAWFVWNKR 462
+GVAFKLRL FL P K+RG+WL DN P +V+LPRATYR R STE WFVW R
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETR 55
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.930e-17 Identity = 48/76 (63.16%), Postives = 51/76 (67.11%), Query Frame = -2
Query: 171 GSTTTI*GELSASHCPLVFMGCRKSSLSLNATPTRPIRSACFKIANAVLYGGPVTIQSGRRVSWLKML*NVSVVTS 398
G TT + SHCPLV +G RK SLSLNATPTRPI A FKIA A LYGG VT SGRR S K+ NVSVV S
Sbjct: 160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: UPI001E591ED4 (hypothetical protein n=1 Tax=Nostoc favosum TaxID=2907819 RepID=UPI001E591ED4) HSP 1 Score: 80.1 bits (196), Expect = 2.060e-15 Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 1
Query: 4 STSWQVTSLLEHVEVRGMVLD-CCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKT-AFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCS-------TEAWFVWNKRKT 468
S SW T LL HV++ G++ + C G A + ++ +ND++P L AD H+D T + F DWI T PPY A I+K A + RVGVA L FL+P R +L + P +V+++PR +R S T + FVW+K T
Sbjct: 6 SPSWFTTELLRHVKLSGVIGEPCVGHGAIASLLSVWPYTKQMWTNDIDPHLAADYHLDATLSDSWAKFPD----CDWICTNPPYSEFAAPIIKNAYQKARVGVAAFLLTSFLEPCDDRADFLQQHPPSLVIIMPRFCFRKDKRGSRWATDNVTISCFVWDKSAT 165
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: UPI001E5A9AD5 (hypothetical protein n=1 Tax=Nostoc favosum TaxID=2907819 RepID=UPI001E5A9AD5) HSP 1 Score: 79.7 bits (195), Expect = 4.550e-15 Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query: 4 STSWQVTSLLEHVEVRGMVLD-CCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKT-AFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYR----GRHSCS---TEAWFVWNKRKTEG--CTRSSFRFAG 504
S SW T LL HV + G++ + C G A ++ +ND++P L AD H+D T +N DWI T PPY A I+K A RVGVA L FL+P R +L + P +V+++PR +R G+ + T + FVW+K T+ TR + R G
Sbjct: 31 SPSWFTTELLRHVPLSGVIGEPCVGMGAIASLLQAWPHTKQMWTNDIDPHLAADYHLDATLSESWNSLPE----CDWICTNPPYSDFAAPIIKNAFAKARVGVAAFLLTSFLEPCDDRAAFLEEYPPSLVLIMPRYCFRKDKKGKRWATDNITISCFVWDKCTTQQRIITRPANRITG 204
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 1.640e-13 Identity = 42/119 (35.29%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 106 AERGIRVTSNDLNPSLIADSHVDVTTDTFYNIF--SHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATY-RGRHSCSTEAWFVW 453
AE+ RV + P AD+++D + ++F F ++ +RP+W+VT PPY A +K A+ + GV FK+ + L+P RG WL N P + + L RA Y R ++ E W VW
Sbjct: 123 AEQNTRVRTMRRRP---ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVW 238
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 5.640e-12 Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 1
Query: 43 EVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTF---YNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWL---ADNSPHMVVVLPRATYR--------GRHSCS---TEAWFVWNK 459
E+ G +L+ A +R LA G + +ND++P+ D D T D F + ++ DW+VT PP+ A IL A+ RVGVAF LRL +++P+ TR WL AD + + PR +R G+ + T AWFVW +
Sbjct: 26 EINGRILEPTAGAGQI-ARALAGNGRTIFTNDIDPNHGCDFASDAT-DPFAFCWGLYGGI----DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVWRR 175
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 7.930e-7 Identity = 42/125 (33.60%), Postives = 57/125 (45.60%), Query Frame = 1
Query: 19 VTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTR------GQWLADNS 375
V +L V + G VLD CG DA ++ G T +L+ SL+ D F I + ++PDW+VT PPYK + + AL + GVA KL L P+ T G W D S
Sbjct: 55 VDALRAAVAITGCVLDMCGGPEDAVAQ-----GFGGTCTNLDASLVYFP------DEF--IKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTDGS 166 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig721.16.1 >prot_P-littoralis_Contig721.16.1 ID=prot_P-littoralis_Contig721.16.1|Name=mRNA_P-littoralis_Contig721.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp FSTSWQVTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSback to top mRNA from alignment at P-littoralis_Contig721:82699..83992+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig721.16.1 ID=mRNA_P-littoralis_Contig721.16.1|Name=mRNA_P-littoralis_Contig721.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-littoralis_Contig721:82699..83992+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig721:82699..83992+ >mRNA_P-littoralis_Contig721.16.1 ID=mRNA_P-littoralis_Contig721.16.1|Name=mRNA_P-littoralis_Contig721.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig721:82699..83992+ (Pylaiella littoralis U1_48)back to top |