mRNA_P-littoralis_Contig721.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig721.16.1
Unique NamemRNA_P-littoralis_Contig721.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 5.260e-53
Identity = 87/147 (59.18%), Postives = 108/147 (73.47%), Query Frame = 1
Query:   16 QVTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCSTEAWFVWN 456
            +V +LL +V++ G VLD CGSA DA   VL    + V++ND NP L AD+H+D T++ F  +FS E +RPDWIVT PPY  AF+IL +AL + RVGVAFKLRL FL+P KTRG+WL DN P  VVVLPRATY GR   STEAWF+W+
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWH 160          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 95.9 bits (237), Expect = 8.310e-22
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 1
Query:    1 FSTSWQVTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADS-HVDVTTDTFYNIFSHETRRP-DWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGR---HSCSTEAWFVWNK 459
            F+ +  V +LL H+++ G +L+ C  +  A S  L E G+ V + D     IAD+   D TT  ++     + ++P DW+VT PP+ +A  IL +A     VGVAF LRL +L+P K RGQWLA++ P ++V LPR ++ G     SC T AW +W K
Sbjct:   20 FTPTSAVDTLLNHIDITGTLLEPCNGS-GAISNRLKEDGLSVITTD-----IADNPQDDATTHQYW-----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSC-TCAWMIWKK 164          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.730e-17
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   70 CGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIF--SHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCST-EAWFVW 453
            CG   DA +  L      + +ND++    AD++++ + + F   F  ++  +RP+W+VT PPY  A   +K A+ +   GVAFK+ + FL+P   RG WL  N P + V L RA Y   ++  T E W VW
Sbjct:    2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.390e-17
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  298 VGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCSTEAWFVWNKR 462
            +GVAFKLRL FL P K+RG+WL DN P  +V+LPRATYR R   STE WFVW  R
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETR 55          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.930e-17
Identity = 48/76 (63.16%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  171 GSTTTI*GELSASHCPLVFMGCRKSSLSLNATPTRPIRSACFKIANAVLYGGPVTIQSGRRVSWLKML*NVSVVTS 398
            G TT +      SHCPLV +G RK SLSLNATPTRPI  A FKIA A LYGG VT  SGRR S  K+  NVSVV S
Sbjct:  160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: UPI001E591ED4 (hypothetical protein n=1 Tax=Nostoc favosum TaxID=2907819 RepID=UPI001E591ED4)

HSP 1 Score: 80.1 bits (196), Expect = 2.060e-15
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 1
Query:    4 STSWQVTSLLEHVEVRGMVLD-CCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKT-AFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCS-------TEAWFVWNKRKT 468
            S SW  T LL HV++ G++ + C G    A    +     ++ +ND++P L AD H+D T    +  F       DWI T PPY   A  I+K A +  RVGVA  L   FL+P   R  +L  + P +V+++PR  +R     S       T + FVW+K  T
Sbjct:    6 SPSWFTTELLRHVKLSGVIGEPCVGHGAIASLLSVWPYTKQMWTNDIDPHLAADYHLDATLSDSWAKFPD----CDWICTNPPYSEFAAPIIKNAYQKARVGVAAFLLTSFLEPCDDRADFLQQHPPSLVIIMPRFCFRKDKRGSRWATDNVTISCFVWDKSAT 165          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: UPI001E5A9AD5 (hypothetical protein n=1 Tax=Nostoc favosum TaxID=2907819 RepID=UPI001E5A9AD5)

HSP 1 Score: 79.7 bits (195), Expect = 4.550e-15
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query:    4 STSWQVTSLLEHVEVRGMVLD-CCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKT-AFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYR----GRHSCS---TEAWFVWNKRKTEG--CTRSSFRFAG 504
            S SW  T LL HV + G++ + C G    A          ++ +ND++P L AD H+D T    +N         DWI T PPY   A  I+K A    RVGVA  L   FL+P   R  +L +  P +V+++PR  +R    G+   +   T + FVW+K  T+    TR + R  G
Sbjct:   31 SPSWFTTELLRHVPLSGVIGEPCVGMGAIASLLQAWPHTKQMWTNDIDPHLAADYHLDATLSESWNSLPE----CDWICTNPPYSDFAAPIIKNAFAKARVGVAAFLLTSFLEPCDDRAAFLEEYPPSLVLIMPRYCFRKDKKGKRWATDNITISCFVWDKCTTQQRIITRPANRITG 204          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.640e-13
Identity = 42/119 (35.29%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  106 AERGIRVTSNDLNPSLIADSHVDVTTDTFYNIF--SHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATY-RGRHSCSTEAWFVW 453
            AE+  RV +    P   AD+++D + ++F   F  ++  +RP+W+VT PPY  A   +K A+ +   GV FK+ +  L+P   RG WL  N P + + L RA Y R  ++   E W VW
Sbjct:  123 AEQNTRVRTMRRRP---ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVW 238          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 5.640e-12
Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   43 EVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTF---YNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTRGQWL---ADNSPHMVVVLPRATYR--------GRHSCS---TEAWFVWNK 459
            E+ G +L+    A    +R LA  G  + +ND++P+   D   D T D F   + ++       DW+VT PP+  A  IL  A+   RVGVAF LRL +++P+ TR  WL   AD   +   + PR  +R        G+   +   T AWFVW +
Sbjct:   26 EINGRILEPTAGAGQI-ARALAGNGRTIFTNDIDPNHGCDFASDAT-DPFAFCWGLYGGI----DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVWRR 175          
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.930e-7
Identity = 42/125 (33.60%), Postives = 57/125 (45.60%), Query Frame = 1
Query:   19 VTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPSLIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRVGVAFKLRLDFLQPIKTR------GQWLADNS 375
            V +L   V + G VLD CG   DA ++     G   T  +L+ SL+         D F  I  +  ++PDW+VT PPYK +   +  AL +   GVA KL L    P+ T       G W  D S
Sbjct:   55 VDALRAAVAITGCVLDMCGGPEDAVAQ-----GFGGTCTNLDASLVYFP------DEF--IKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPVPTGEVGEFWGVWYTDGS 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE5.260e-5359.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO8.310e-2239.24Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
D8LSI1_ECTSI1.730e-1735.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6T5_9PHAE3.390e-1765.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE3.930e-1763.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E591ED42.060e-1534.15hypothetical protein n=1 Tax=Nostoc favosum TaxID=... [more]
UPI001E5A9AD54.550e-1533.71hypothetical protein n=1 Tax=Nostoc favosum TaxID=... [more]
A0A6H5KU02_9PHAE1.640e-1335.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V5ZCZ4_9BACT5.640e-1233.33Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A6H5L1N5_9PHAE7.930e-733.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig721contigP-littoralis_Contig721:82699..83992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog102129.Lepto7375DRAFT_7442
PFAMsAcyltransferase,MMPL,Methyltransf_21,Methyltransf_25,Methyltransf_31
Model size510
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.7e-14
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1GAGN@1117|Cyanobacteria,1HHWT@1150|Oscillatoriales
DescriptionSpecifically methylates the guanine in position
Cds size510
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.1678565-CDS-P-littoralis_Contig721:82698..828471680791503.1678565-CDS-P-littoralis_Contig721:82698..82847Pylaiella littoralis U1_48CDSP-littoralis_Contig721 82699..82847 +
1680791503.1799307-CDS-P-littoralis_Contig721:83631..839921680791503.1799307-CDS-P-littoralis_Contig721:83631..83992Pylaiella littoralis U1_48CDSP-littoralis_Contig721 83632..83992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig721.16.1prot_P-littoralis_Contig721.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig721 82699..83992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig721.16.1

>prot_P-littoralis_Contig721.16.1 ID=prot_P-littoralis_Contig721.16.1|Name=mRNA_P-littoralis_Contig721.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
FSTSWQVTSLLEHVEVRGMVLDCCGSARDAPSRVLAERGIRVTSNDLNPS
LIADSHVDVTTDTFYNIFSHETRRPDWIVTGPPYKTAFAILKQALRIGRV
GVAFKLRLDFLQPIKTRGQWLADNSPHMVVVLPRATYRGRHSCSTEAWFV
WNKRKTEGCTRSSFRFAGP*
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mRNA from alignment at P-littoralis_Contig721:82699..83992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig721.16.1 ID=mRNA_P-littoralis_Contig721.16.1|Name=mRNA_P-littoralis_Contig721.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-littoralis_Contig721:82699..83992+ (Pylaiella littoralis U1_48)
TTCTCAACGTCGTGGCAGGTGACATCTCTATTGGAACACGTTGAAGTGCG CGGAATGGTGCTCGACTGCTGTGGTTCGGCTCGAGACGCTCCCAGCCGGG TGCTCGCAGAACGCGGTATCCGCGTTACTTCGAATGATCTTAATCCCAGG TACGAGTTGCGTAGCCAATTATTCGTTATCCGATCGGTCGCTTGTTGAGT CTTCGTAGCTTTGTCTTCGAAAAATGTGCGGCAGTGAAAGTAGCGGAGAA TTATTGTAACCCCCTCGTGCTCTCTGCCACATCCTTCGAGGAAAAACGAC CGTTGCCGTAGATTAATTTCATGTGACAATATCTCCAAAAATGATCGCCC TCTCCAGGGCGGCCTTCAATATTTTTTTTCAAGTGTTTGCCCCCCGCCCG CGCGCGGCGTTGCCTGATTTTTATTTTTTGTATCTGCCACATACAGCAAC AGTAGCCCCGCTACCCGCCTGATCTGCTGTAAATCGTTTTTAATCAGGCC ACATGATATAACAACACGAATTTTTTTATATTTCCTCCTCCTCATTCGGG GCGACTACAGCACAGCAGCAGTATACCGGCTCGCAAGTATGAAACTGAAC ATCGGCCTGAAGCTGGGTCTCTTGTTTTGCGAATGAACATCATGAGAGCA CGCTGTTTCGCACATAAATAAACAATAAGTGGTAGGGTTTCTTTAGTATG GTCCCGGCTGCTGAGCCGCTTTTCGTACGCCGAATTTCTTGAATTTTCAA TAATCTCAGCCTTATTTCGTTACTCAAATCATGCCATTCTTCATGTGACA GAATCTCCAAAACCTCCGATCTAGCGGTGTGAACCCACGAGATAGTTTCC CCTTCACCGACGTACCCCTTTATTTTTTGCAATTCTCATTTTGGAACGTG ATGCTGCACCATTTACGGCCTCCTTACTCTCAGTTTGATTGCGGACAGCC ATGTAGACGTGACGACGGACACGTTTTACAACATCTTCAGCCACGAGACG CGCCGCCCGGACTGGATCGTGACGGGCCCGCCGTACAAGACCGCGTTTGC TATTTTGAAGCAGGCGCTACGGATCGGGCGCGTTGGGGTGGCGTTCAAGC TCAGGCTCGATTTCCTGCAGCCCATAAAAACTAGGGGGCAGTGGCTCGCC GATAACTCTCCTCATATGGTGGTTGTGCTACCGCGCGCTACATACCGTGG TAGACACTCTTGCTCGACGGAGGCTTGGTTCGTATGGAACAAGCGAAAGA CGGAGGGATGCACTAGGTCTTCTTTTCGCTTCGCAGGACCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig721:82699..83992+

>mRNA_P-littoralis_Contig721.16.1 ID=mRNA_P-littoralis_Contig721.16.1|Name=mRNA_P-littoralis_Contig721.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig721:82699..83992+ (Pylaiella littoralis U1_48)
TTCTCAACGTCGTGGCAGGTGACATCTCTATTGGAACACGTTGAAGTGCG
CGGAATGGTGCTCGACTGCTGTGGTTCGGCTCGAGACGCTCCCAGCCGGG
TGCTCGCAGAACGCGGTATCCGCGTTACTTCGAATGATCTTAATCCCAGT
TTGATTGCGGACAGCCATGTAGACGTGACGACGGACACGTTTTACAACAT
CTTCAGCCACGAGACGCGCCGCCCGGACTGGATCGTGACGGGCCCGCCGT
ACAAGACCGCGTTTGCTATTTTGAAGCAGGCGCTACGGATCGGGCGCGTT
GGGGTGGCGTTCAAGCTCAGGCTCGATTTCCTGCAGCCCATAAAAACTAG
GGGGCAGTGGCTCGCCGATAACTCTCCTCATATGGTGGTTGTGCTACCGC
GCGCTACATACCGTGGTAGACACTCTTGCTCGACGGAGGCTTGGTTCGTA
TGGAACAAGCGAAAGACGGAGGGATGCACTAGGTCTTCTTTTCGCTTCGC
AGGACCTTGA
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